Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_A02
(657 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q15011|HERPU_HUMAN Homocysteine-responsive endoplasmic r... 38 0.020
sp|Q9JJK5|HERPU_MOUSE Homocysteine-responsive endoplasmic r... 38 0.020
sp|Q804S5|MIB1_BRARE Ubiquitin ligase protein mib (Mind bom... 33 0.85
sp|P34228|SEF1_YEAST Suppressor protein SEF1 32 1.1
sp|P04933|MSP1_PLAFW Merozoite surface protein 1 precursor ... 32 1.5
sp|P04932|MSP1_PLAFK Merozoite surface protein 1 precursor ... 32 1.5
sp|Q98QQ2|Y309_MYCPU Hypothetical UPF0348 protein MYPU_3090 32 1.9
sp|Q86YT6|MIB1_HUMAN Ubiquitin ligase protein MIB1 (Mind bo... 32 1.9
sp|Q80SY4|MIB1_MOUSE Ubiquitin ligase protein MIB1 (Mind bo... 32 1.9
sp|Q98Q98|TRMD_MYCPU tRNA (Guanine-N(1)-)-methyltransferase... 31 3.2
>sp|Q15011|HERPU_HUMAN Homocysteine-responsive endoplasmic reticulum-resident
ubiquitin-like domain member 1 protein (Methyl
methanesulfonate (MMF)-inducible fragment protein 1)
Length = 391
Score = 38.1 bits (87), Expect = 0.020
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Frame = +3
Query: 6 KPTVESQKVIYVGKLLKDDQILKNLF-EPESSTIVHFICQSSINGNEKKVDDVSKKPEIT 182
+P E Q++IY GKLL D Q L++L + E ++H +C ++ K + +K E T
Sbjct: 48 RPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVC--NVKSPSKMPEINAKVAEST 105
Query: 183 EE 188
EE
Sbjct: 106 EE 107
>sp|Q9JJK5|HERPU_MOUSE Homocysteine-responsive endoplasmic reticulum-resident
ubiquitin-like domain member 1 protein
Length = 391
Score = 38.1 bits (87), Expect = 0.020
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +3
Query: 6 KPTVESQKVIYVGKLLKDDQILKNLF-EPESSTIVHFICQSSINGNEKKVDDVSKKPEIT 182
+P E Q++IY GKLL D Q L++L + E ++H +C ++ K + +K E T
Sbjct: 48 RPRPEDQRLIYSGKLLLDHQCLQDLLPKQEKRHVLHLVC--NVKNPSKMPETSTKGAEST 105
Query: 183 EEKRPDLYKEYQN 221
E+ PD + Q+
Sbjct: 106 EQ--PDNSNQTQH 116
>sp|Q804S5|MIB1_BRARE Ubiquitin ligase protein mib (Mind bomb protein)
Length = 1030
Score = 32.7 bits (73), Expect = 0.85
Identities = 16/40 (40%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +3
Query: 63 QILKNLFEP-ESSTIVHFICQSSINGNEKKVDDVSKKPEI 179
Q+LK LFE ES I + +++ NG+ KV+D+ K+P++
Sbjct: 417 QLLKKLFETQESGDINEELVKAAANGDLAKVEDILKRPDV 456
>sp|P34228|SEF1_YEAST Suppressor protein SEF1
Length = 1057
Score = 32.3 bits (72), Expect = 1.1
Identities = 20/56 (35%), Positives = 26/56 (46%)
Frame = -2
Query: 638 QQQQSKSHQNIEIMQNISRFDLSIILIFSSVSHQPSKCCSHHVLHSILCWRSINSP 471
+QQQ + HQ Q IS D S ++H+P C+H H I C S N P
Sbjct: 24 EQQQLQQHQFPSKKQRISHHDDS-----HQINHRPVTSCTHCRQHKIKCDASQNFP 74
>sp|P04933|MSP1_PLAFW Merozoite surface protein 1 precursor (Merozoite surface antigens)
(PMMSA) (P195)
Length = 1639
Score = 32.0 bits (71), Expect = 1.5
Identities = 15/63 (23%), Positives = 31/63 (49%)
Frame = +3
Query: 120 QSSINGNEKKVDDVSKKPEITEEKRPDLYKEYQNYVNNYYASTSQSFAAINHYQQMMWMN 299
+ I +KK++ K E + D+ KEY+ +N Y S + + ++++MM
Sbjct: 457 KEKIKIEKKKIESDKKSYEDRSKSLNDITKEYEKLLNEIYDSKFNNNIDLTNFEKMMGKR 516
Query: 300 HAY 308
++Y
Sbjct: 517 YSY 519
>sp|P04932|MSP1_PLAFK Merozoite surface protein 1 precursor (Merozoite surface antigens)
(PMMSA) (P190)
Length = 1630
Score = 32.0 bits (71), Expect = 1.5
Identities = 15/63 (23%), Positives = 31/63 (49%)
Frame = +3
Query: 120 QSSINGNEKKVDDVSKKPEITEEKRPDLYKEYQNYVNNYYASTSQSFAAINHYQQMMWMN 299
+ I +KK++ K E + D+ KEY+ +N Y S + + ++++MM
Sbjct: 448 KEKIKIEKKKIESDKKSYEDRSKSLNDITKEYEKLLNEIYDSKFNNNIDLTNFEKMMGKR 507
Query: 300 HAY 308
++Y
Sbjct: 508 YSY 510
>sp|Q98QQ2|Y309_MYCPU Hypothetical UPF0348 protein MYPU_3090
Length = 298
Score = 31.6 bits (70), Expect = 1.9
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = +3
Query: 156 DVSKKPEITEEKRP----DLYKEYQNYVNNYYASTSQSFAAINHYQQMMWMNHAYMQSYA 323
DVSK + EK+P DLY ++Q + N A + F ++ + ++ H +SY
Sbjct: 210 DVSKYTPMIFEKKPIRIEDLYFDFQTIIFNKTAQELRQFKLVSEGIENLFKKHINEKSYD 269
Query: 324 SYCAQFSTR 350
+ A+ +++
Sbjct: 270 DFVAKVNSK 278
>sp|Q86YT6|MIB1_HUMAN Ubiquitin ligase protein MIB1 (Mind bomb homolog 1)
(DAPK-interacting protein 1) (DIP-1) (Zinc finger ZZ
type with ankyrin repeat domain protein 2)
Length = 1006
Score = 31.6 bits (70), Expect = 1.9
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +3
Query: 63 QILKNLFEP-ESSTIVHFICQSSINGNEKKVDDVSKKPEI 179
Q+LK LFE ES + + +++ NG+ KV+D+ K+P++
Sbjct: 417 QLLKKLFETQESGDLNEELVKAAANGDVAKVEDLLKRPDV 456
>sp|Q80SY4|MIB1_MOUSE Ubiquitin ligase protein MIB1 (Mind bomb homolog 1)
(DAPK-interacting protein 1) (DIP-1)
Length = 1006
Score = 31.6 bits (70), Expect = 1.9
Identities = 15/40 (37%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
Frame = +3
Query: 63 QILKNLFEP-ESSTIVHFICQSSINGNEKKVDDVSKKPEI 179
Q+LK LFE ES + + +++ NG+ KV+D+ K+P++
Sbjct: 417 QLLKKLFETQESGDLNEELVKAAANGDVAKVEDLLKRPDV 456
>sp|Q98Q98|TRMD_MYCPU tRNA (Guanine-N(1)-)-methyltransferase (M1G-methyltransferase)
(tRNA [GM37] methyltransferase)
Length = 225
Score = 30.8 bits (68), Expect = 3.2
Identities = 13/33 (39%), Positives = 23/33 (69%), Gaps = 2/33 (6%)
Frame = +3
Query: 129 INGNEKKVDDVSKKPEITEEK--RPDLYKEYQN 221
+NGN K+++ K+ +I + K RPDLY+ ++N
Sbjct: 191 LNGNHKEIEKWRKQKQIEKTKINRPDLYERFKN 223
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,704,806
Number of Sequences: 369166
Number of extensions: 1020793
Number of successful extensions: 3390
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3387
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5462583840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)