Planaria EST Database

DrC_00115

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00115
         (837 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q05024|YM74_YEAST  Hypothetical 26.5 kDa protein in FUS2-...    56   1e-07
sp|Q61466|SMRD1_MOUSE  SWI/SNF-related matrix-associated act...    43   0.001
sp|Q96GM5|SMRD1_HUMAN  SWI/SNF-related matrix-associated act...    42   0.002
sp|Q99JR8|SMRD2_MOUSE  SWI/SNF-related matrix-associated act...    36   0.15 
sp|Q92925|SMRD2_HUMAN  SWI/SNF-related matrix-associated act...    36   0.15 
sp|O54772|SMRD2_RAT  SWI/SNF-related matrix-associated actin...    36   0.15 
sp|Q9FT92|Y5843_ARATH  Protein At5g08430                           35   0.33 
sp|Q49WY3|CARA_STAS1  Carbamoyl-phosphate synthase small cha...    30   6.3  
sp|P06394|K1C10_BOVIN  Keratin, type I cytoskeletal 10 (Cyto...    30   8.3  
sp|Q9H501|CT006_HUMAN  Hypothetical protein C20orf6                30   8.3  

>sp|Q05024|YM74_YEAST Hypothetical 26.5 kDa protein in FUS2-RNH1 intergenic region
          Length = 226

 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 26/68 (38%), Positives = 45/68 (66%)
 Frame = +1

Query: 493 LSEHLAEYLGVDKMPRHDVVKRFWDIAKEKNMFDPSNRQFVLCNDDWQRLFSKKRIRMFT 672
           LS  L ++LG +++PR  VVK  W   KE ++ +P +R+ +LC++  + +F KK + MF+
Sbjct: 126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFGKK-MTMFS 184

Query: 673 ISKYLEKH 696
           ++K L KH
Sbjct: 185 MNKLLTKH 192

>sp|Q61466|SMRD1_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily D member 1 (SWI/SNF complex 60 kDa
           subunit) (60 kDa BRG-1/Brm associated factor subunit A)
           (BRG1-associated factor 60A) (D15KZ1 protein)
          Length = 476

 Score = 43.1 bits (100), Expect = 0.001
 Identities = 20/65 (30%), Positives = 33/65 (50%)
 Frame = +1

Query: 493 LSEHLAEYLGVDKMPRHDVVKRFWDIAKEKNMFDPSNRQFVLCNDDWQRLFSKKRIRMFT 672
           L   LA  LG+    R  +++  W   K   + DP  R+FVLC+   Q++F  +R++   
Sbjct: 258 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSE 317

Query: 673 ISKYL 687
           I + L
Sbjct: 318 IPQRL 322

>sp|Q96GM5|SMRD1_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily D member 1 (SWI/SNF complex 60 kDa
           subunit) (60 kDa BRG-1/Brm associated factor subunit A)
           (BRG1-associated factor 60A)
          Length = 476

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 19/65 (29%), Positives = 33/65 (50%)
 Frame = +1

Query: 493 LSEHLAEYLGVDKMPRHDVVKRFWDIAKEKNMFDPSNRQFVLCNDDWQRLFSKKRIRMFT 672
           L   LA  LG+    R  +++  W   K   + DP  R+FV+C+   Q++F  +R++   
Sbjct: 258 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSE 317

Query: 673 ISKYL 687
           I + L
Sbjct: 318 IPQRL 322

>sp|Q99JR8|SMRD2_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily D member 2 (60 kDa BRG-1/Brm
           associated factor subunit B) (BRG1-associated factor
           60B)
          Length = 456

 Score = 35.8 bits (81), Expect = 0.15
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +1

Query: 493 LSEHLAEYLGVDKMPRHDVVKRFWDIAKEKNMFDPSNRQFVLCNDDWQRLFSKKRIRMFT 672
           L   LA  LGV    R  +++  W   K   + D   R+++ CN  ++++FS  R+R   
Sbjct: 238 LDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSE 297

Query: 673 I 675
           I
Sbjct: 298 I 298

>sp|Q92925|SMRD2_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily D member 2 (60 kDa BRG-1/Brm
           associated factor subunit B) (BRG1-associated factor
           60B)
          Length = 456

 Score = 35.8 bits (81), Expect = 0.15
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +1

Query: 493 LSEHLAEYLGVDKMPRHDVVKRFWDIAKEKNMFDPSNRQFVLCNDDWQRLFSKKRIRMFT 672
           L   LA  LGV    R  +++  W   K   + D   R+++ CN  ++++FS  R+R   
Sbjct: 238 LDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSE 297

Query: 673 I 675
           I
Sbjct: 298 I 298

>sp|O54772|SMRD2_RAT SWI/SNF-related matrix-associated actin-dependent regulator of
           chromatin subfamily D member 2 (60 kDa BRG-1/Brm
           associated factor subunit B) (BRG1-associated factor
           60B)
          Length = 456

 Score = 35.8 bits (81), Expect = 0.15
 Identities = 18/61 (29%), Positives = 30/61 (49%)
 Frame = +1

Query: 493 LSEHLAEYLGVDKMPRHDVVKRFWDIAKEKNMFDPSNRQFVLCNDDWQRLFSKKRIRMFT 672
           L   LA  LGV    R  +++  W   K   + D   R+++ CN  ++++FS  R+R   
Sbjct: 238 LDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSE 297

Query: 673 I 675
           I
Sbjct: 298 I 298

>sp|Q9FT92|Y5843_ARATH Protein At5g08430
          Length = 553

 Score = 34.7 bits (78), Expect = 0.33
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +1

Query: 526 DKMPRHDVVKRFWDIAKEKNMFDPSNRQFVLCNDDWQRLFSKKRIRMFTISKYLEKHFIK 705
           + + R+DV         ++ + DPSN++ V+C+     LF  + I    +   LEKH+ +
Sbjct: 50  EMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKE 109

Query: 706 N 708
           N
Sbjct: 110 N 110

>sp|Q49WY3|CARA_STAS1 Carbamoyl-phosphate synthase small chain (Carbamoyl-phosphate
           synthetase glutamine chain)
          Length = 366

 Score = 30.4 bits (67), Expect = 6.3
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = +1

Query: 13  LKSISAKAIRLKLQEK--LSEDFTEDKSDIDKLIMKLYNERLPK 138
           +  +  ++I  K++    L   FT++KS+ID +I KL +  LP+
Sbjct: 110 ISGVDTRSITRKIRNNGVLKAGFTDEKSEIDSMIAKLQSVELPR 153

>sp|P06394|K1C10_BOVIN Keratin, type I cytoskeletal 10 (Cytokeratin-10) (CK-10)
           (Keratin-10) (K10) (Cytokeratin-6B) (Cytokeratin VIB)
          Length = 526

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 250 NLDKKNGGITITKDGAESSGDSV-INHDDDAEMARALQAEINGMRNV 387
           NL   N  I I  D A  + D   + ++++  + ++++A+ING+R V
Sbjct: 193 NLTTDNANILIQVDNARLAADDFRLKYENEVTLRQSVEADINGLRRV 239

>sp|Q9H501|CT006_HUMAN Hypothetical protein C20orf6
          Length = 851

 Score = 30.0 bits (66), Expect = 8.3
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +1

Query: 526 DKMPRHDVVKRFW-DIAKEKNMFDPSNRQFVLCNDDWQRLFSKKRIRMFTISK 681
           D  P     +  W ++ K+    D   R+  +CN DW RL +K  + +F   K
Sbjct: 321 DLFPEESGFEHAWRELDKDAPRADEITRRLAVCNMDWDRLKAKDLLALFNSFK 373

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,109,977
Number of Sequences: 369166
Number of extensions: 1271806
Number of successful extensions: 3615
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3614
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8148988185
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00115

  1. Dr_sW_003_O12
  2. Dr_sW_021_F11