Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_021_F11
(600 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q05024|YM74_YEAST Hypothetical 26.5 kDa protein in FUS2-... 56 6e-08
sp|Q61466|SMRD1_MOUSE SWI/SNF-related matrix-associated act... 43 5e-04
sp|Q96GM5|SMRD1_HUMAN SWI/SNF-related matrix-associated act... 42 0.001
sp|Q99JR8|SMRD2_MOUSE SWI/SNF-related matrix-associated act... 36 0.085
sp|Q92925|SMRD2_HUMAN SWI/SNF-related matrix-associated act... 36 0.085
sp|O54772|SMRD2_RAT SWI/SNF-related matrix-associated actin... 36 0.085
sp|Q9FT92|Y5843_ARATH Protein At5g08430 35 0.19
sp|P06394|K1C10_BOVIN Keratin, type I cytoskeletal 10 (Cyto... 30 4.7
sp|Q9H501|CT006_HUMAN Hypothetical protein C20orf6 30 4.7
>sp|Q05024|YM74_YEAST Hypothetical 26.5 kDa protein in FUS2-RNH1 intergenic region
Length = 226
Score = 56.2 bits (134), Expect = 6e-08
Identities = 26/68 (38%), Positives = 45/68 (66%)
Frame = +1
Query: 256 LSEHLAEYLGVDKMPRHDVVKRFWDIAKEKNMFDPSNRQFVLCNDDWQRLFSKKRIRMFT 435
LS L ++LG +++PR VVK W KE ++ +P +R+ +LC++ + +F KK + MF+
Sbjct: 126 LSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFGKK-MTMFS 184
Query: 436 ISKYLEKH 459
++K L KH
Sbjct: 185 MNKLLTKH 192
>sp|Q61466|SMRD1_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 1 (SWI/SNF complex 60 kDa
subunit) (60 kDa BRG-1/Brm associated factor subunit A)
(BRG1-associated factor 60A) (D15KZ1 protein)
Length = 476
Score = 43.1 bits (100), Expect = 5e-04
Identities = 20/65 (30%), Positives = 33/65 (50%)
Frame = +1
Query: 256 LSEHLAEYLGVDKMPRHDVVKRFWDIAKEKNMFDPSNRQFVLCNDDWQRLFSKKRIRMFT 435
L LA LG+ R +++ W K + DP R+FVLC+ Q++F +R++
Sbjct: 258 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVLCDKYLQQIFESQRMKFSE 317
Query: 436 ISKYL 450
I + L
Sbjct: 318 IPQRL 322
>sp|Q96GM5|SMRD1_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 1 (SWI/SNF complex 60 kDa
subunit) (60 kDa BRG-1/Brm associated factor subunit A)
(BRG1-associated factor 60A)
Length = 476
Score = 42.4 bits (98), Expect = 0.001
Identities = 19/65 (29%), Positives = 33/65 (50%)
Frame = +1
Query: 256 LSEHLAEYLGVDKMPRHDVVKRFWDIAKEKNMFDPSNRQFVLCNDDWQRLFSKKRIRMFT 435
L LA LG+ R +++ W K + DP R+FV+C+ Q++F +R++
Sbjct: 258 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSE 317
Query: 436 ISKYL 450
I + L
Sbjct: 318 IPQRL 322
>sp|Q99JR8|SMRD2_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 2 (60 kDa BRG-1/Brm
associated factor subunit B) (BRG1-associated factor
60B)
Length = 456
Score = 35.8 bits (81), Expect = 0.085
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1
Query: 256 LSEHLAEYLGVDKMPRHDVVKRFWDIAKEKNMFDPSNRQFVLCNDDWQRLFSKKRIRMFT 435
L LA LGV R +++ W K + D R+++ CN ++++FS R+R
Sbjct: 238 LDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSE 297
Query: 436 I 438
I
Sbjct: 298 I 298
>sp|Q92925|SMRD2_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 2 (60 kDa BRG-1/Brm
associated factor subunit B) (BRG1-associated factor
60B)
Length = 456
Score = 35.8 bits (81), Expect = 0.085
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1
Query: 256 LSEHLAEYLGVDKMPRHDVVKRFWDIAKEKNMFDPSNRQFVLCNDDWQRLFSKKRIRMFT 435
L LA LGV R +++ W K + D R+++ CN ++++FS R+R
Sbjct: 238 LDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSE 297
Query: 436 I 438
I
Sbjct: 298 I 298
>sp|O54772|SMRD2_RAT SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily D member 2 (60 kDa BRG-1/Brm
associated factor subunit B) (BRG1-associated factor
60B)
Length = 456
Score = 35.8 bits (81), Expect = 0.085
Identities = 18/61 (29%), Positives = 30/61 (49%)
Frame = +1
Query: 256 LSEHLAEYLGVDKMPRHDVVKRFWDIAKEKNMFDPSNRQFVLCNDDWQRLFSKKRIRMFT 435
L LA LGV R +++ W K + D R+++ CN ++++FS R+R
Sbjct: 238 LDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSE 297
Query: 436 I 438
I
Sbjct: 298 I 298
>sp|Q9FT92|Y5843_ARATH Protein At5g08430
Length = 553
Score = 34.7 bits (78), Expect = 0.19
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = +1
Query: 289 DKMPRHDVVKRFWDIAKEKNMFDPSNRQFVLCNDDWQRLFSKKRIRMFTISKYLEKHFIK 468
+ + R+DV ++ + DPSN++ V+C+ LF + I + LEKH+ +
Sbjct: 50 EMISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKE 109
Query: 469 N 471
N
Sbjct: 110 N 110
>sp|P06394|K1C10_BOVIN Keratin, type I cytoskeletal 10 (Cytokeratin-10) (CK-10)
(Keratin-10) (K10) (Cytokeratin-6B) (Cytokeratin VIB)
Length = 526
Score = 30.0 bits (66), Expect = 4.7
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 13 NLDKKNGGITITKDGAESSGDSV-INHDDDAEMARALQAEINGMRNV 150
NL N I I D A + D + ++++ + ++++A+ING+R V
Sbjct: 193 NLTTDNANILIQVDNARLAADDFRLKYENEVTLRQSVEADINGLRRV 239
>sp|Q9H501|CT006_HUMAN Hypothetical protein C20orf6
Length = 851
Score = 30.0 bits (66), Expect = 4.7
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = +1
Query: 289 DKMPRHDVVKRFW-DIAKEKNMFDPSNRQFVLCNDDWQRLFSKKRIRMFTISK 444
D P + W ++ K+ D R+ +CN DW RL +K + +F K
Sbjct: 321 DLFPEESGFEHAWRELDKDAPRADEITRRLAVCNMDWDRLKAKDLLALFNSFK 373
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,895,181
Number of Sequences: 369166
Number of extensions: 1084243
Number of successful extensions: 2942
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2941
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4602033670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)