Planaria EST Database

DrC_00112

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00112
         (827 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P05480|SRC_MOUSE  Neuronal proto-oncogene tyrosine-protei...    52   2e-06
sp|P13116|SRC2_XENLA  Tyrosine-protein kinase SRC-2 (p60-SRC-2)    52   3e-06
sp|P15054|SRC_AVIS2  Tyrosine-protein kinase transforming pr...    52   3e-06
sp|P00525|SRC_AVISR  Tyrosine-protein kinase transforming pr...    52   3e-06
sp|P12931|SRC_HUMAN  Proto-oncogene tyrosine-protein kinase ...    52   3e-06
sp|P00523|SRC_CHICK  Proto-oncogene tyrosine-protein kinase ...    52   3e-06
sp|Q9WUD9|SRC_RAT  Proto-oncogene tyrosine-protein kinase Sr...    52   3e-06
sp|P13115|SRC1_XENLA  Tyrosine-protein kinase Src-1 (p60-Src-1)    52   3e-06
sp|P14085|SRC_AVIST  Tyrosine-protein kinase transforming pr...    52   3e-06
sp|P14084|SRC_AVISS  Tyrosine-protein kinase transforming pr...    52   3e-06

>sp|P05480|SRC_MOUSE Neuronal proto-oncogene tyrosine-protein kinase Src (p60-Src)
           (c-Src) (pp60c-src)
          Length = 541

 Score = 52.4 bits (124), Expect = 2e-06
 Identities = 24/61 (39%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
 Frame = +1

Query: 529 IALYSHQSRGESEISMQKNDQLEILENHDKSGSK--DWSLVKNLRTGAQGYVPTNYLSK* 702
           +ALY ++SR E+++S +K ++L+I+ N  K   +  DW L  +L TG  GY+P+NY++  
Sbjct: 89  VALYDYESRTETDLSFKKGERLQIVNNTRKVDVREGDWWLAHSLSTGQTGYIPSNYVAPS 148

Query: 703 D 705
           D
Sbjct: 149 D 149

>sp|P13116|SRC2_XENLA Tyrosine-protein kinase SRC-2 (p60-SRC-2)
          Length = 532

 Score = 51.6 bits (122), Expect = 3e-06
 Identities = 32/100 (32%), Positives = 55/100 (55%)
 Frame = +1

Query: 406 DLMQLSPNNYTDTIKRTSMIDTVPISLRTNRSFSTSSNIIRIALYSHQSRGESEISMQKN 585
           DL      N++DTI  TS   T P++               +ALY ++SR E+++S +K 
Sbjct: 56  DLTPFGGVNFSDTI--TSPQRTGPLA---------GGVTTFVALYDYESRTETDLSFRKG 104

Query: 586 DQLEILENHDKSGSKDWSLVKNLRTGAQGYVPTNYLSK*D 705
           ++L+I+ N +     DW L ++L +G  GY+P+NY++  D
Sbjct: 105 ERLQIVNNTEG----DWWLARSLSSGQTGYIPSNYVAPSD 140

>sp|P15054|SRC_AVIS2 Tyrosine-protein kinase transforming protein Src (p60-Src) (v-Src)
           (pp60v-src)
          Length = 587

 Score = 51.6 bits (122), Expect = 3e-06
 Identities = 23/59 (38%), Positives = 40/59 (67%)
 Frame = +1

Query: 529 IALYSHQSRGESEISMQKNDQLEILENHDKSGSKDWSLVKNLRTGAQGYVPTNYLSK*D 705
           +ALY ++SR E+++S +K ++L+I+ N +     DW L  +L TG  GY+P+NY++  D
Sbjct: 87  VALYDYESRTETDLSFKKGERLQIVNNTEG----DWWLAHSLTTGQTGYIPSNYVAPSD 141

>sp|P00525|SRC_AVISR Tyrosine-protein kinase transforming protein Src (p60-Src) (v-Src)
           (pp60v-src)
 sp|P00524|SRC_RSVSA Tyrosine-protein kinase transforming protein SRC (p60-Src) (v-Src)
           (pp60v-src)
          Length = 526

 Score = 51.6 bits (122), Expect = 3e-06
 Identities = 23/59 (38%), Positives = 40/59 (67%)
 Frame = +1

Query: 529 IALYSHQSRGESEISMQKNDQLEILENHDKSGSKDWSLVKNLRTGAQGYVPTNYLSK*D 705
           +ALY ++SR E+++S +K ++L+I+ N +     DW L  +L TG  GY+P+NY++  D
Sbjct: 87  VALYDYESRTETDLSFKKGERLQIVNNTEG----DWWLAHSLTTGQTGYIPSNYVAPSD 141

>sp|P12931|SRC_HUMAN Proto-oncogene tyrosine-protein kinase Src (p60-Src) (c-Src)
           (pp60c-src)
          Length = 536

 Score = 51.6 bits (122), Expect = 3e-06
 Identities = 23/59 (38%), Positives = 40/59 (67%)
 Frame = +1

Query: 529 IALYSHQSRGESEISMQKNDQLEILENHDKSGSKDWSLVKNLRTGAQGYVPTNYLSK*D 705
           +ALY ++SR E+++S +K ++L+I+ N +     DW L  +L TG  GY+P+NY++  D
Sbjct: 90  VALYDYESRTETDLSFKKGERLQIVNNTEG----DWWLAHSLSTGQTGYIPSNYVAPSD 144

>sp|P00523|SRC_CHICK Proto-oncogene tyrosine-protein kinase Src (p60-Src) (c-Src)
           (pp60c-src)
          Length = 533

 Score = 51.6 bits (122), Expect = 3e-06
 Identities = 23/59 (38%), Positives = 40/59 (67%)
 Frame = +1

Query: 529 IALYSHQSRGESEISMQKNDQLEILENHDKSGSKDWSLVKNLRTGAQGYVPTNYLSK*D 705
           +ALY ++SR E+++S +K ++L+I+ N +     DW L  +L TG  GY+P+NY++  D
Sbjct: 87  VALYDYESRTETDLSFKKGERLQIVNNTEG----DWWLAHSLTTGQTGYIPSNYVAPSD 141

>sp|Q9WUD9|SRC_RAT Proto-oncogene tyrosine-protein kinase Src (p60-Src) (c-Src)
           (pp60c-src)
          Length = 536

 Score = 51.6 bits (122), Expect = 3e-06
 Identities = 23/59 (38%), Positives = 40/59 (67%)
 Frame = +1

Query: 529 IALYSHQSRGESEISMQKNDQLEILENHDKSGSKDWSLVKNLRTGAQGYVPTNYLSK*D 705
           +ALY ++SR E+++S +K ++L+I+ N +     DW L  +L TG  GY+P+NY++  D
Sbjct: 90  VALYDYESRTETDLSFKKGERLQIVNNTEG----DWWLAHSLSTGQTGYIPSNYVAPFD 144

>sp|P13115|SRC1_XENLA Tyrosine-protein kinase Src-1 (p60-Src-1)
          Length = 532

 Score = 51.6 bits (122), Expect = 3e-06
 Identities = 32/100 (32%), Positives = 55/100 (55%)
 Frame = +1

Query: 406 DLMQLSPNNYTDTIKRTSMIDTVPISLRTNRSFSTSSNIIRIALYSHQSRGESEISMQKN 585
           DL      N++DTI  TS   T P++               +ALY ++SR E+++S +K 
Sbjct: 56  DLTPFGGINFSDTI--TSPQRTGPLA---------GGVTTFVALYDYESRTETDLSFKKG 104

Query: 586 DQLEILENHDKSGSKDWSLVKNLRTGAQGYVPTNYLSK*D 705
           ++L+I+ N +     DW L ++L +G  GY+P+NY++  D
Sbjct: 105 ERLQIVNNTEG----DWWLARSLSSGQTGYIPSNYVAPSD 140

>sp|P14085|SRC_AVIST Tyrosine-protein kinase transforming protein SRC (p60-Src) (v-Src)
           (pp60v-src)
          Length = 557

 Score = 51.6 bits (122), Expect = 3e-06
 Identities = 23/59 (38%), Positives = 40/59 (67%)
 Frame = +1

Query: 529 IALYSHQSRGESEISMQKNDQLEILENHDKSGSKDWSLVKNLRTGAQGYVPTNYLSK*D 705
           +ALY ++SR E+++S +K ++L+I+ N +     DW L  +L TG  GY+P+NY++  D
Sbjct: 87  VALYDYESRTETDLSFKKGERLQIVNNTEG----DWWLAHSLTTGQTGYIPSNYVAPSD 141

>sp|P14084|SRC_AVISS Tyrosine-protein kinase transforming protein SRC (p60-Src) (v-Src)
           (pp60v-src)
          Length = 568

 Score = 51.6 bits (122), Expect = 3e-06
 Identities = 23/59 (38%), Positives = 40/59 (67%)
 Frame = +1

Query: 529 IALYSHQSRGESEISMQKNDQLEILENHDKSGSKDWSLVKNLRTGAQGYVPTNYLSK*D 705
           +ALY ++SR E+++S +K ++L+I+ N +     DW L  +L TG  GY+P+NY++  D
Sbjct: 87  VALYDYESRTETDLSFKKGERLQIVNNTEG----DWWLAHSLTTGQTGYIPSNYVAPSD 141

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,793,155
Number of Sequences: 369166
Number of extensions: 1620371
Number of successful extensions: 4459
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4435
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8004331590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00112

  1. Dr_sW_003_N04
  2. Dr_sW_002_E18