Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_003_N04
(827 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05480|SRC_MOUSE Neuronal proto-oncogene tyrosine-protei... 51 3e-06
sp|P15054|SRC_AVIS2 Tyrosine-protein kinase transforming pr... 50 6e-06
sp|P00525|SRC_AVISR Tyrosine-protein kinase transforming pr... 50 6e-06
sp|P12931|SRC_HUMAN Proto-oncogene tyrosine-protein kinase ... 50 6e-06
sp|P00523|SRC_CHICK Proto-oncogene tyrosine-protein kinase ... 50 6e-06
sp|Q9WUD9|SRC_RAT Proto-oncogene tyrosine-protein kinase Sr... 50 6e-06
sp|P14085|SRC_AVIST Tyrosine-protein kinase transforming pr... 50 6e-06
sp|P14084|SRC_AVISS Tyrosine-protein kinase transforming pr... 50 6e-06
sp|P13116|SRC2_XENLA Tyrosine-protein kinase SRC-2 (p60-SRC-2) 50 8e-06
sp|P13115|SRC1_XENLA Tyrosine-protein kinase Src-1 (p60-Src-1) 50 8e-06
>sp|P05480|SRC_MOUSE Neuronal proto-oncogene tyrosine-protein kinase Src (p60-Src)
(c-Src) (pp60c-src)
Length = 541
Score = 51.2 bits (121), Expect = 3e-06
Identities = 24/60 (40%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Frame = +1
Query: 532 ALYSHQSRGESEISMQKNDQLEILENHDKSGSK--DWSLVKNLRTGAQGYVPTNYLSK*D 705
ALY ++SR E+++S +K ++L+I+ N K + DW L +L TG GY+P+NY++ D
Sbjct: 90 ALYDYESRTETDLSFKKGERLQIVNNTRKVDVREGDWWLAHSLSTGQTGYIPSNYVAPSD 149
>sp|P15054|SRC_AVIS2 Tyrosine-protein kinase transforming protein Src (p60-Src) (v-Src)
(pp60v-src)
Length = 587
Score = 50.4 bits (119), Expect = 6e-06
Identities = 23/58 (39%), Positives = 39/58 (67%)
Frame = +1
Query: 532 ALYSHQSRGESEISMQKNDQLEILENHDKSGSKDWSLVKNLRTGAQGYVPTNYLSK*D 705
ALY ++SR E+++S +K ++L+I+ N + DW L +L TG GY+P+NY++ D
Sbjct: 88 ALYDYESRTETDLSFKKGERLQIVNNTEG----DWWLAHSLTTGQTGYIPSNYVAPSD 141
>sp|P00525|SRC_AVISR Tyrosine-protein kinase transforming protein Src (p60-Src) (v-Src)
(pp60v-src)
sp|P00524|SRC_RSVSA Tyrosine-protein kinase transforming protein SRC (p60-Src) (v-Src)
(pp60v-src)
Length = 526
Score = 50.4 bits (119), Expect = 6e-06
Identities = 23/58 (39%), Positives = 39/58 (67%)
Frame = +1
Query: 532 ALYSHQSRGESEISMQKNDQLEILENHDKSGSKDWSLVKNLRTGAQGYVPTNYLSK*D 705
ALY ++SR E+++S +K ++L+I+ N + DW L +L TG GY+P+NY++ D
Sbjct: 88 ALYDYESRTETDLSFKKGERLQIVNNTEG----DWWLAHSLTTGQTGYIPSNYVAPSD 141
>sp|P12931|SRC_HUMAN Proto-oncogene tyrosine-protein kinase Src (p60-Src) (c-Src)
(pp60c-src)
Length = 536
Score = 50.4 bits (119), Expect = 6e-06
Identities = 23/58 (39%), Positives = 39/58 (67%)
Frame = +1
Query: 532 ALYSHQSRGESEISMQKNDQLEILENHDKSGSKDWSLVKNLRTGAQGYVPTNYLSK*D 705
ALY ++SR E+++S +K ++L+I+ N + DW L +L TG GY+P+NY++ D
Sbjct: 91 ALYDYESRTETDLSFKKGERLQIVNNTEG----DWWLAHSLSTGQTGYIPSNYVAPSD 144
>sp|P00523|SRC_CHICK Proto-oncogene tyrosine-protein kinase Src (p60-Src) (c-Src)
(pp60c-src)
Length = 533
Score = 50.4 bits (119), Expect = 6e-06
Identities = 23/58 (39%), Positives = 39/58 (67%)
Frame = +1
Query: 532 ALYSHQSRGESEISMQKNDQLEILENHDKSGSKDWSLVKNLRTGAQGYVPTNYLSK*D 705
ALY ++SR E+++S +K ++L+I+ N + DW L +L TG GY+P+NY++ D
Sbjct: 88 ALYDYESRTETDLSFKKGERLQIVNNTEG----DWWLAHSLTTGQTGYIPSNYVAPSD 141
>sp|Q9WUD9|SRC_RAT Proto-oncogene tyrosine-protein kinase Src (p60-Src) (c-Src)
(pp60c-src)
Length = 536
Score = 50.4 bits (119), Expect = 6e-06
Identities = 23/58 (39%), Positives = 39/58 (67%)
Frame = +1
Query: 532 ALYSHQSRGESEISMQKNDQLEILENHDKSGSKDWSLVKNLRTGAQGYVPTNYLSK*D 705
ALY ++SR E+++S +K ++L+I+ N + DW L +L TG GY+P+NY++ D
Sbjct: 91 ALYDYESRTETDLSFKKGERLQIVNNTEG----DWWLAHSLSTGQTGYIPSNYVAPFD 144
>sp|P14085|SRC_AVIST Tyrosine-protein kinase transforming protein SRC (p60-Src) (v-Src)
(pp60v-src)
Length = 557
Score = 50.4 bits (119), Expect = 6e-06
Identities = 23/58 (39%), Positives = 39/58 (67%)
Frame = +1
Query: 532 ALYSHQSRGESEISMQKNDQLEILENHDKSGSKDWSLVKNLRTGAQGYVPTNYLSK*D 705
ALY ++SR E+++S +K ++L+I+ N + DW L +L TG GY+P+NY++ D
Sbjct: 88 ALYDYESRTETDLSFKKGERLQIVNNTEG----DWWLAHSLTTGQTGYIPSNYVAPSD 141
>sp|P14084|SRC_AVISS Tyrosine-protein kinase transforming protein SRC (p60-Src) (v-Src)
(pp60v-src)
Length = 568
Score = 50.4 bits (119), Expect = 6e-06
Identities = 23/58 (39%), Positives = 39/58 (67%)
Frame = +1
Query: 532 ALYSHQSRGESEISMQKNDQLEILENHDKSGSKDWSLVKNLRTGAQGYVPTNYLSK*D 705
ALY ++SR E+++S +K ++L+I+ N + DW L +L TG GY+P+NY++ D
Sbjct: 88 ALYDYESRTETDLSFKKGERLQIVNNTEG----DWWLAHSLTTGQTGYIPSNYVAPSD 141
>sp|P13116|SRC2_XENLA Tyrosine-protein kinase SRC-2 (p60-SRC-2)
Length = 532
Score = 50.1 bits (118), Expect = 8e-06
Identities = 22/58 (37%), Positives = 40/58 (68%)
Frame = +1
Query: 532 ALYSHQSRGESEISMQKNDQLEILENHDKSGSKDWSLVKNLRTGAQGYVPTNYLSK*D 705
ALY ++SR E+++S +K ++L+I+ N + DW L ++L +G GY+P+NY++ D
Sbjct: 87 ALYDYESRTETDLSFRKGERLQIVNNTEG----DWWLARSLSSGQTGYIPSNYVAPSD 140
>sp|P13115|SRC1_XENLA Tyrosine-protein kinase Src-1 (p60-Src-1)
Length = 532
Score = 50.1 bits (118), Expect = 8e-06
Identities = 22/58 (37%), Positives = 40/58 (68%)
Frame = +1
Query: 532 ALYSHQSRGESEISMQKNDQLEILENHDKSGSKDWSLVKNLRTGAQGYVPTNYLSK*D 705
ALY ++SR E+++S +K ++L+I+ N + DW L ++L +G GY+P+NY++ D
Sbjct: 87 ALYDYESRTETDLSFKKGERLQIVNNTEG----DWWLARSLSSGQTGYIPSNYVAPSD 140
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,880,786
Number of Sequences: 369166
Number of extensions: 1579977
Number of successful extensions: 4185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4169
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8004331590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)