Planaria EST Database


DrC_00083

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00083
         (506 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q99PF5|FUBP2_RAT  Far upstream element-binding protein 2 ...    49   5e-06
sp|Q92945|FUBP2_HUMAN  Far upstream element-binding protein ...    49   5e-06
sp|Q8UVD9|ZBP2_CHICK  Zipcode-binding protein 2                    49   7e-06
sp|Q96I24|FUBP3_HUMAN  Far upstream element-binding protein ...    44   2e-04
sp|Q9NXZ2|DDX43_HUMAN  Probable ATP-dependent RNA helicase D...    44   2e-04
sp|P06105|SC160_YEAST  Protein SCP160 (Protein HX)                 43   5e-04
sp|Q91WJ8|FUBP1_MOUSE  Far upstream element-binding protein ...    42   6e-04
sp|Q96AE4|FUBP1_HUMAN  Far upstream element-binding protein ...    42   6e-04
sp|Q58928|YF33_METJA  Hypothetical protein MJ1533                  37   0.020
sp|Q8VDJ3|VIGLN_MOUSE  Vigilin (High density lipoprotein-bin...    37   0.027
>sp|Q99PF5|FUBP2_RAT Far upstream element-binding protein 2 (FUSE-binding protein 2) (KH
           type splicing regulatory protein) (KSRP) (MAP2 RNA
           trans-acting protein 1) (MARTA1)
          Length = 721

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 23/59 (38%), Positives = 34/59 (57%)
 Frame = +1

Query: 31  LGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKSKIDDITRR 207
           +GLIIG+GG +I +I  +  C++ I  D     E  V L G+  ++ KAK  +DDI  R
Sbjct: 157 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSR 215

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
 Frame = +1

Query: 10  IYVSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAEDDEV--PVLLEGSQRNINKAKS 183
           I + +   GL+IGKGG  I+++ +    ++ + +D +++  V  P+ + G    + +A  
Sbjct: 239 IMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACE 298

Query: 184 KIDDITRRPSKRQNSDDDDRSYNSHYNNSNKRPSRRN 294
            + DI R   + Q    D   Y S        P  R+
Sbjct: 299 MVMDILR--ERDQGGFGDRNEYGSRVGGGIDVPVPRH 333

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +1

Query: 31  LGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKSKIDDI 198
           +G++IG+ G  I++I ++   RI  K+D     E    + G       A   I+D+
Sbjct: 335 VGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDL 390

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = +1

Query: 7   TIYVSSRYLGLIIGKGGSRIREISDECNCRINIKKD---QAEDDEVPVLLEGSQRNINKA 177
           T  + +   GL+IG+GG  ++ I+ +    + I +      + +    ++ GS + I+ A
Sbjct: 429 TFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDHA 488

Query: 178 KSKIDDITRRP 210
           K  I++    P
Sbjct: 489 KQLIEEKIEGP 499
>sp|Q92945|FUBP2_HUMAN Far upstream element-binding protein 2 (FUSE-binding protein 2) (KH
           type splicing regulatory protein) (KSRP) (p75)
          Length = 707

 Score = 49.3 bits (116), Expect = 5e-06
 Identities = 23/59 (38%), Positives = 34/59 (57%)
 Frame = +1

Query: 31  LGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKSKIDDITRR 207
           +GLIIG+GG +I +I  +  C++ I  D     E  V L G+  ++ KAK  +DDI  R
Sbjct: 156 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSR 214

 Score = 35.4 bits (80), Expect = 0.077
 Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
 Frame = +1

Query: 10  IYVSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAEDDEV--PVLLEGSQRNINKAKS 183
           I + +   GL+IGKGG  I+++ +    ++ + +D +++  V  P+ + G    + +A  
Sbjct: 238 IMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACE 297

Query: 184 KIDDITRRPSKRQNSDDDD 240
            + DI R  +K    D ++
Sbjct: 298 MVMDILRNVTKAGFGDRNE 316

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +1

Query: 31  LGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKSKIDDI 198
           +G++IG+ G  I++I ++   RI  K+D     E    + G       A   I+D+
Sbjct: 334 VGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDL 389

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = +1

Query: 7   TIYVSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPV----LLEGSQRNINK 174
           T  + +   GL+IG+GG  ++ I+ +    + I + Q      P     ++ GS + I+ 
Sbjct: 426 TFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISR-QLPPTGTPTSKLFIIRGSPQQIDH 484

Query: 175 AKSKIDDITRRP 210
            +  I++    P
Sbjct: 485 CRQLIEEKIEGP 496
>sp|Q8UVD9|ZBP2_CHICK Zipcode-binding protein 2
          Length = 769

 Score = 48.9 bits (115), Expect = 7e-06
 Identities = 24/59 (40%), Positives = 33/59 (55%)
 Frame = +1

Query: 31  LGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKSKIDDITRR 207
           +GLIIG+GG +I +I  +  C++ I  D     E  V L GS   + KAK  +DDI  R
Sbjct: 220 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGSPEAVQKAKLMLDDIVSR 278

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
 Frame = +1

Query: 10  IYVSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAEDDEV--PVLLEGSQRNINKAKS 183
           I + +   GL+IGKGG  I+++ +    ++   +D +++  V  P+ + G    + +A  
Sbjct: 301 IMIPAGKAGLVIGKGGETIKQLQERAGVKMIFIQDGSQNTNVDKPLRIIGDPYKVQQACE 360

Query: 184 KIDDITRRPSKRQNSDDDDRSYNSHYNNSNKRPSRRN 294
            + DI R   + Q    D   Y S        P  R+
Sbjct: 361 MVMDILR--ERDQGGFGDRNEYGSRIGGGIDVPVPRH 395

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +1

Query: 31  LGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKSKIDDI 198
           +G++IG+ G  I++I ++   RI  K+D     E    + G       A   I+D+
Sbjct: 397 VGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPERCEHAARIINDL 452

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
 Frame = +1

Query: 7   TIYVSSRYLGLIIGKGGSRIREISDECNCRINIKKD---QAEDDEVPVLLEGSQRNINKA 177
           T  + +   GL+IG+GG  ++ I+ +    + I +      + +    ++ GS + I  A
Sbjct: 490 TFSIPTHKCGLVIGRGGENVKAINQQRGAFVEISRQLPPNGDPNFKLFIIRGSPQQIEHA 549

Query: 178 KSKIDDITRRP 210
           K  I++    P
Sbjct: 550 KQPIEEKIEGP 560
>sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3 (FUSE-binding protein 3)
          Length = 572

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 22/64 (34%), Positives = 34/64 (53%)
 Frame = +1

Query: 16  VSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKSKIDD 195
           V  + +G IIG+GG +I  I  E  C+I I  + +   E P +L G+  +I +AK  +  
Sbjct: 84  VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQ 143

Query: 196 ITRR 207
           I  R
Sbjct: 144 IVDR 147

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +1

Query: 7   TIYVSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPV---LLEGSQRNINKA 177
           T  V +   GL+IGKGG  I+ I+ +    + ++++   + +  +    + G  + I  A
Sbjct: 358 TYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRGVPQQIEVA 417

Query: 178 KSKIDD 195
           +  ID+
Sbjct: 418 RQLIDE 423

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/67 (20%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = +1

Query: 10  IYVSSRYLGLIIGKGGSRIREISDECNCRINIKKD--QAEDDEVPVLLEGSQRNINKAKS 183
           I + +  +GL+IG+GG  I+++ +    ++ + +D       + P+ + G    + +A+ 
Sbjct: 167 ILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDAFKVQQARE 226

Query: 184 KIDDITR 204
            + +I R
Sbjct: 227 MVLEIIR 233
>sp|Q9NXZ2|DDX43_HUMAN Probable ATP-dependent RNA helicase DDX43 (DEAD-box protein 43)
           (DEAD-box protein HAGE) (Helical antigen)
          Length = 648

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 24/72 (33%), Positives = 41/72 (56%)
 Frame = +1

Query: 16  VSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKSKIDD 195
           + S ++G +IG+GGS+I+ I    N  I I ++Q E     V + GS+    KAK+ ID+
Sbjct: 74  LKSHFVGAVIGRGGSKIKNIQSTTNTTIQIIQEQPES---LVKIFGSKAMQTKAKAVIDN 130

Query: 196 ITRRPSKRQNSD 231
             ++  +  NS+
Sbjct: 131 FVKKLEENYNSE 142
>sp|P06105|SC160_YEAST Protein SCP160 (Protein HX)
          Length = 1222

 Score = 42.7 bits (99), Expect = 5e-04
 Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 8/79 (10%)
 Frame = +1

Query: 4   ATIYVSSRYLGLIIGKGGSRIREISDECNCRINIKK--------DQAEDDEVPVLLEGSQ 159
           A I V S+    IIG GG  IREISD    +IN+ K        +  +D    V L G  
Sbjct: 180 AVIEVPSKCKASIIGSGGRTIREISDAYEVKINVSKEVNENSYDEDMDDTTSNVSLFGDF 239

Query: 160 RNINKAKSKIDDITRRPSK 216
            ++N AK+KI  I +  +K
Sbjct: 240 ESVNLAKAKILAIVKEETK 258

 Score = 35.0 bits (79), Expect = 0.10
 Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
 Frame = +1

Query: 1   KATIYVSSRYLGLIIGKGGSRIREISDECNCRINIKKDQ----AEDDEVPVLLEGSQRNI 168
           K T+ + +  +  +IG  GS +++I ++  C+I+I  ++    ++D  V V L G + N+
Sbjct: 636 KMTVNIPANSVARLIGNKGSNLQQIREKFACQIDIPNEENNNASKDKTVEVTLTGLEYNL 695

Query: 169 NKAK 180
             AK
Sbjct: 696 THAK 699

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 17/62 (27%), Positives = 34/62 (54%)
 Frame = +1

Query: 22   SRYLGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKSKIDDIT 201
            +R   +I+G GGS I++I +  +  IN+ +   + ++V V + G++  + KA   +    
Sbjct: 1162 TRRFNMIVGPGGSNIKKIREAADVIINVPRKSDKVNDV-VYIRGTKAGVEKAGEMVLKSL 1220

Query: 202  RR 207
            RR
Sbjct: 1221 RR 1222
>sp|Q91WJ8|FUBP1_MOUSE Far upstream element-binding protein 1 (FUSE-binding protein 1)
           (FBP)
          Length = 651

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = +1

Query: 31  LGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKSKIDDITRR 207
           +G IIG+GG +I  I  E  C+I I  D     E   +L G+  ++  AK  +D I  +
Sbjct: 108 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEK 166

 Score = 33.9 bits (76), Expect = 0.22
 Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = +1

Query: 34  GLIIGKGGSRIREISDECNCRINIKKD---QAEDDEVPVLLEGSQRNINKAKSKIDD 195
           GLIIGKGG  I+ IS +   RI +++     A+ +     + G+ + I+ A+  I++
Sbjct: 385 GLIIGKGGETIKSISQQSGARIELQRSPPPNADPNMKLFTIRGTPQQIDYARQLIEE 441

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = +1

Query: 10  IYVSSRYLGLIIGKGGSRIREISDECNCRINIKKD--QAEDDEVPVLLEGSQRNINKAKS 183
           I + +   GL+IGKGG  I+++ +    ++ + +D  Q    + P+ + G    + +AK 
Sbjct: 186 IMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKE 245

Query: 184 KIDDITR 204
            + ++ R
Sbjct: 246 MVLELIR 252
>sp|Q96AE4|FUBP1_HUMAN Far upstream element-binding protein 1 (FUSE-binding protein 1)
           (FBP) (DNA helicase V) (HDH V)
          Length = 643

 Score = 42.4 bits (98), Expect = 6e-04
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = +1

Query: 31  LGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKSKIDDITRR 207
           +G IIG+GG +I  I  E  C+I I  D     E   +L G+  ++  AK  +D I  +
Sbjct: 111 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEK 169

 Score = 34.3 bits (77), Expect = 0.17
 Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
 Frame = +1

Query: 34  GLIIGKGGSRIREISDECNCRINIKKD---QAEDDEVPVLLEGSQRNINKAKSKIDD 195
           GLIIGKGG  I+ IS +   RI ++++    A+ +     + G+ + I+ A+  I++
Sbjct: 388 GLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEE 444

 Score = 32.3 bits (72), Expect = 0.65
 Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = +1

Query: 10  IYVSSRYLGLIIGKGGSRIREISDECNCRINIKKD--QAEDDEVPVLLEGSQRNINKAKS 183
           I + +   GL+IGKGG  I+++ +    ++ + +D  Q    + P+ + G    + +AK 
Sbjct: 189 IMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKE 248

Query: 184 KIDDITR 204
            + ++ R
Sbjct: 249 MVLELIR 255
>sp|Q58928|YF33_METJA Hypothetical protein MJ1533
          Length = 642

 Score = 37.4 bits (85), Expect = 0.020
 Identities = 14/41 (34%), Positives = 27/41 (65%)
 Frame = +1

Query: 10  IYVSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAEDDE 132
           + V  +Y+G IIGKGG  I ++ D    +I++K+ + E+++
Sbjct: 515 LIVPEKYIGAIIGKGGKEISKLEDMLGLKISVKEKEKEEEK 555
>sp|Q8VDJ3|VIGLN_MOUSE Vigilin (High density lipoprotein-binding protein) (HDL-binding
           protein)
          Length = 1268

 Score = 37.0 bits (84), Expect = 0.027
 Identities = 17/55 (30%), Positives = 34/55 (61%)
 Frame = +1

Query: 40  IIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKSKIDDITR 204
           IIGKGG+ I++I +E N +I++  + +  +   +++ G + N   A+S+I  I +
Sbjct: 596 IIGKGGANIKKIREESNTKIDLPAENSNSE--TIIITGKRANCEAARSRILSIQK 648

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 15/61 (24%), Positives = 32/61 (52%)
 Frame = +1

Query: 10  IYVSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKSKI 189
           I     Y   +IGKGG +IR++ D    RI     + +D ++ + + G +  + +A+ ++
Sbjct: 732 IRAKPEYHKFLIGKGGGKIRKVRDSTGARIIFPAAEDKDQDL-ITIIGKEDAVREAQKEL 790

Query: 190 D 192
           +
Sbjct: 791 E 791

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 16/72 (22%), Positives = 37/72 (51%)
 Frame = +1

Query: 4   ATIYVSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKS 183
           AT+ +   +   +IGK G +++++  +   +I I +   +D    + + G++  I KA+ 
Sbjct: 153 ATVPIPKEHHRFVIGKNGEKLQDLELKTATKIQIPR--PDDPSNQIKITGTKEGIEKARH 210

Query: 184 KIDDITRRPSKR 219
           ++  I+    KR
Sbjct: 211 EVLLISAEQDKR 222
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,923,895
Number of Sequences: 369166
Number of extensions: 954291
Number of successful extensions: 5566
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5168
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3206272875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00083

  1. Dr_sW_003_C19
  2. Dr_sW_022_N23