DrC_00083
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00083 (506 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|Q99PF5|FUBP2_RAT Far upstream element-binding protein 2 ... 49 5e-06 sp|Q92945|FUBP2_HUMAN Far upstream element-binding protein ... 49 5e-06 sp|Q8UVD9|ZBP2_CHICK Zipcode-binding protein 2 49 7e-06 sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein ... 44 2e-04 sp|Q9NXZ2|DDX43_HUMAN Probable ATP-dependent RNA helicase D... 44 2e-04 sp|P06105|SC160_YEAST Protein SCP160 (Protein HX) 43 5e-04 sp|Q91WJ8|FUBP1_MOUSE Far upstream element-binding protein ... 42 6e-04 sp|Q96AE4|FUBP1_HUMAN Far upstream element-binding protein ... 42 6e-04 sp|Q58928|YF33_METJA Hypothetical protein MJ1533 37 0.020 sp|Q8VDJ3|VIGLN_MOUSE Vigilin (High density lipoprotein-bin... 37 0.027
>sp|Q99PF5|FUBP2_RAT Far upstream element-binding protein 2 (FUSE-binding protein 2) (KH type splicing regulatory protein) (KSRP) (MAP2 RNA trans-acting protein 1) (MARTA1) Length = 721 Score = 49.3 bits (116), Expect = 5e-06 Identities = 23/59 (38%), Positives = 34/59 (57%) Frame = +1 Query: 31 LGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKSKIDDITRR 207 +GLIIG+GG +I +I + C++ I D E V L G+ ++ KAK +DDI R Sbjct: 157 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSR 215
Score = 35.0 bits (79), Expect = 0.10
Identities = 23/97 (23%), Positives = 44/97 (45%), Gaps = 2/97 (2%)
Frame = +1
Query: 10 IYVSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAEDDEV--PVLLEGSQRNINKAKS 183
I + + GL+IGKGG I+++ + ++ + +D +++ V P+ + G + +A
Sbjct: 239 IMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACE 298
Query: 184 KIDDITRRPSKRQNSDDDDRSYNSHYNNSNKRPSRRN 294
+ DI R + Q D Y S P R+
Sbjct: 299 MVMDILR--ERDQGGFGDRNEYGSRVGGGIDVPVPRH 333
Score = 30.8 bits (68), Expect = 1.9
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 31 LGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKSKIDDI 198
+G++IG+ G I++I ++ RI K+D E + G A I+D+
Sbjct: 335 VGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDL 390
Score = 30.8 bits (68), Expect = 1.9
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +1
Query: 7 TIYVSSRYLGLIIGKGGSRIREISDECNCRINIKKD---QAEDDEVPVLLEGSQRNINKA 177
T + + GL+IG+GG ++ I+ + + I + + + ++ GS + I+ A
Sbjct: 429 TFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFVIRGSPQQIDHA 488
Query: 178 KSKIDDITRRP 210
K I++ P
Sbjct: 489 KQLIEEKIEGP 499
>sp|Q92945|FUBP2_HUMAN Far upstream element-binding protein 2 (FUSE-binding protein 2) (KH type splicing regulatory protein) (KSRP) (p75) Length = 707 Score = 49.3 bits (116), Expect = 5e-06 Identities = 23/59 (38%), Positives = 34/59 (57%) Frame = +1 Query: 31 LGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKSKIDDITRR 207 +GLIIG+GG +I +I + C++ I D E V L G+ ++ KAK +DDI R Sbjct: 156 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQKAKMMLDDIVSR 214
Score = 35.4 bits (80), Expect = 0.077
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +1
Query: 10 IYVSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAEDDEV--PVLLEGSQRNINKAKS 183
I + + GL+IGKGG I+++ + ++ + +D +++ V P+ + G + +A
Sbjct: 238 IMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYKVQQACE 297
Query: 184 KIDDITRRPSKRQNSDDDD 240
+ DI R +K D ++
Sbjct: 298 MVMDILRNVTKAGFGDRNE 316
Score = 30.8 bits (68), Expect = 1.9
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 31 LGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKSKIDDI 198
+G++IG+ G I++I ++ RI K+D E + G A I+D+
Sbjct: 334 VGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPDRCEHAARIINDL 389
Score = 28.5 bits (62), Expect = 9.4
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
Frame = +1
Query: 7 TIYVSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPV----LLEGSQRNINK 174
T + + GL+IG+GG ++ I+ + + I + Q P ++ GS + I+
Sbjct: 426 TFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISR-QLPPTGTPTSKLFIIRGSPQQIDH 484
Query: 175 AKSKIDDITRRP 210
+ I++ P
Sbjct: 485 CRQLIEEKIEGP 496
>sp|Q8UVD9|ZBP2_CHICK Zipcode-binding protein 2 Length = 769 Score = 48.9 bits (115), Expect = 7e-06 Identities = 24/59 (40%), Positives = 33/59 (55%) Frame = +1 Query: 31 LGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKSKIDDITRR 207 +GLIIG+GG +I +I + C++ I D E V L GS + KAK +DDI R Sbjct: 220 VGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGSPEAVQKAKLMLDDIVSR 278
Score = 34.3 bits (77), Expect = 0.17
Identities = 23/97 (23%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Frame = +1
Query: 10 IYVSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAEDDEV--PVLLEGSQRNINKAKS 183
I + + GL+IGKGG I+++ + ++ +D +++ V P+ + G + +A
Sbjct: 301 IMIPAGKAGLVIGKGGETIKQLQERAGVKMIFIQDGSQNTNVDKPLRIIGDPYKVQQACE 360
Query: 184 KIDDITRRPSKRQNSDDDDRSYNSHYNNSNKRPSRRN 294
+ DI R + Q D Y S P R+
Sbjct: 361 MVMDILR--ERDQGGFGDRNEYGSRIGGGIDVPVPRH 395
Score = 31.6 bits (70), Expect = 1.1
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +1
Query: 31 LGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKSKIDDI 198
+G++IG+ G I++I ++ RI K+D E + G A I+D+
Sbjct: 397 VGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPPERCEHAARIINDL 452
Score = 30.4 bits (67), Expect = 2.5
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Frame = +1
Query: 7 TIYVSSRYLGLIIGKGGSRIREISDECNCRINIKKD---QAEDDEVPVLLEGSQRNINKA 177
T + + GL+IG+GG ++ I+ + + I + + + ++ GS + I A
Sbjct: 490 TFSIPTHKCGLVIGRGGENVKAINQQRGAFVEISRQLPPNGDPNFKLFIIRGSPQQIEHA 549
Query: 178 KSKIDDITRRP 210
K I++ P
Sbjct: 550 KQPIEEKIEGP 560
>sp|Q96I24|FUBP3_HUMAN Far upstream element-binding protein 3 (FUSE-binding protein 3) Length = 572 Score = 43.9 bits (102), Expect = 2e-04 Identities = 22/64 (34%), Positives = 34/64 (53%) Frame = +1 Query: 16 VSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKSKIDD 195 V + +G IIG+GG +I I E C+I I + + E P +L G+ +I +AK + Sbjct: 84 VPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQ 143 Query: 196 ITRR 207 I R Sbjct: 144 IVDR 147
Score = 30.8 bits (68), Expect = 1.9
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +1
Query: 7 TIYVSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPV---LLEGSQRNINKA 177
T V + GL+IGKGG I+ I+ + + ++++ + + + + G + I A
Sbjct: 358 TYTVPADKCGLVIGKGGENIKSINQQSGAHVELQRNPPPNSDPNLRRFTIRGVPQQIEVA 417
Query: 178 KSKIDD 195
+ ID+
Sbjct: 418 RQLIDE 423
Score = 28.5 bits (62), Expect = 9.4
Identities = 14/67 (20%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 10 IYVSSRYLGLIIGKGGSRIREISDECNCRINIKKD--QAEDDEVPVLLEGSQRNINKAKS 183
I + + +GL+IG+GG I+++ + ++ + +D + P+ + G + +A+
Sbjct: 167 ILIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGADKPLRITGDAFKVQQARE 226
Query: 184 KIDDITR 204
+ +I R
Sbjct: 227 MVLEIIR 233
>sp|Q9NXZ2|DDX43_HUMAN Probable ATP-dependent RNA helicase DDX43 (DEAD-box protein 43) (DEAD-box protein HAGE) (Helical antigen) Length = 648 Score = 43.9 bits (102), Expect = 2e-04 Identities = 24/72 (33%), Positives = 41/72 (56%) Frame = +1 Query: 16 VSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKSKIDD 195 + S ++G +IG+GGS+I+ I N I I ++Q E V + GS+ KAK+ ID+ Sbjct: 74 LKSHFVGAVIGRGGSKIKNIQSTTNTTIQIIQEQPES---LVKIFGSKAMQTKAKAVIDN 130 Query: 196 ITRRPSKRQNSD 231 ++ + NS+ Sbjct: 131 FVKKLEENYNSE 142
>sp|P06105|SC160_YEAST Protein SCP160 (Protein HX) Length = 1222 Score = 42.7 bits (99), Expect = 5e-04 Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 8/79 (10%) Frame = +1 Query: 4 ATIYVSSRYLGLIIGKGGSRIREISDECNCRINIKK--------DQAEDDEVPVLLEGSQ 159 A I V S+ IIG GG IREISD +IN+ K + +D V L G Sbjct: 180 AVIEVPSKCKASIIGSGGRTIREISDAYEVKINVSKEVNENSYDEDMDDTTSNVSLFGDF 239 Query: 160 RNINKAKSKIDDITRRPSK 216 ++N AK+KI I + +K Sbjct: 240 ESVNLAKAKILAIVKEETK 258
Score = 35.0 bits (79), Expect = 0.10
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Frame = +1
Query: 1 KATIYVSSRYLGLIIGKGGSRIREISDECNCRINIKKDQ----AEDDEVPVLLEGSQRNI 168
K T+ + + + +IG GS +++I ++ C+I+I ++ ++D V V L G + N+
Sbjct: 636 KMTVNIPANSVARLIGNKGSNLQQIREKFACQIDIPNEENNNASKDKTVEVTLTGLEYNL 695
Query: 169 NKAK 180
AK
Sbjct: 696 THAK 699
Score = 32.3 bits (72), Expect = 0.65
Identities = 17/62 (27%), Positives = 34/62 (54%)
Frame = +1
Query: 22 SRYLGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKSKIDDIT 201
+R +I+G GGS I++I + + IN+ + + ++V V + G++ + KA +
Sbjct: 1162 TRRFNMIVGPGGSNIKKIREAADVIINVPRKSDKVNDV-VYIRGTKAGVEKAGEMVLKSL 1220
Query: 202 RR 207
RR
Sbjct: 1221 RR 1222
>sp|Q91WJ8|FUBP1_MOUSE Far upstream element-binding protein 1 (FUSE-binding protein 1) (FBP) Length = 651 Score = 42.4 bits (98), Expect = 6e-04 Identities = 20/59 (33%), Positives = 30/59 (50%) Frame = +1 Query: 31 LGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKSKIDDITRR 207 +G IIG+GG +I I E C+I I D E +L G+ ++ AK +D I + Sbjct: 108 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEK 166
Score = 33.9 bits (76), Expect = 0.22
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = +1
Query: 34 GLIIGKGGSRIREISDECNCRINIKKD---QAEDDEVPVLLEGSQRNINKAKSKIDD 195
GLIIGKGG I+ IS + RI +++ A+ + + G+ + I+ A+ I++
Sbjct: 385 GLIIGKGGETIKSISQQSGARIELQRSPPPNADPNMKLFTIRGTPQQIDYARQLIEE 441
Score = 32.3 bits (72), Expect = 0.65
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 10 IYVSSRYLGLIIGKGGSRIREISDECNCRINIKKD--QAEDDEVPVLLEGSQRNINKAKS 183
I + + GL+IGKGG I+++ + ++ + +D Q + P+ + G + +AK
Sbjct: 186 IMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKE 245
Query: 184 KIDDITR 204
+ ++ R
Sbjct: 246 MVLELIR 252
>sp|Q96AE4|FUBP1_HUMAN Far upstream element-binding protein 1 (FUSE-binding protein 1) (FBP) (DNA helicase V) (HDH V) Length = 643 Score = 42.4 bits (98), Expect = 6e-04 Identities = 20/59 (33%), Positives = 30/59 (50%) Frame = +1 Query: 31 LGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKSKIDDITRR 207 +G IIG+GG +I I E C+I I D E +L G+ ++ AK +D I + Sbjct: 111 VGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRLLDQIVEK 169
Score = 34.3 bits (77), Expect = 0.17
Identities = 18/57 (31%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Frame = +1
Query: 34 GLIIGKGGSRIREISDECNCRINIKKD---QAEDDEVPVLLEGSQRNINKAKSKIDD 195
GLIIGKGG I+ IS + RI ++++ A+ + + G+ + I+ A+ I++
Sbjct: 388 GLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEE 444
Score = 32.3 bits (72), Expect = 0.65
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = +1
Query: 10 IYVSSRYLGLIIGKGGSRIREISDECNCRINIKKD--QAEDDEVPVLLEGSQRNINKAKS 183
I + + GL+IGKGG I+++ + ++ + +D Q + P+ + G + +AK
Sbjct: 189 IMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITGDPYKVQQAKE 248
Query: 184 KIDDITR 204
+ ++ R
Sbjct: 249 MVLELIR 255
>sp|Q58928|YF33_METJA Hypothetical protein MJ1533 Length = 642 Score = 37.4 bits (85), Expect = 0.020 Identities = 14/41 (34%), Positives = 27/41 (65%) Frame = +1 Query: 10 IYVSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAEDDE 132 + V +Y+G IIGKGG I ++ D +I++K+ + E+++ Sbjct: 515 LIVPEKYIGAIIGKGGKEISKLEDMLGLKISVKEKEKEEEK 555
>sp|Q8VDJ3|VIGLN_MOUSE Vigilin (High density lipoprotein-binding protein) (HDL-binding protein) Length = 1268 Score = 37.0 bits (84), Expect = 0.027 Identities = 17/55 (30%), Positives = 34/55 (61%) Frame = +1 Query: 40 IIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKSKIDDITR 204 IIGKGG+ I++I +E N +I++ + + + +++ G + N A+S+I I + Sbjct: 596 IIGKGGANIKKIREESNTKIDLPAENSNSE--TIIITGKRANCEAARSRILSIQK 648
Score = 31.6 bits (70), Expect = 1.1
Identities = 15/61 (24%), Positives = 32/61 (52%)
Frame = +1
Query: 10 IYVSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKSKI 189
I Y +IGKGG +IR++ D RI + +D ++ + + G + + +A+ ++
Sbjct: 732 IRAKPEYHKFLIGKGGGKIRKVRDSTGARIIFPAAEDKDQDL-ITIIGKEDAVREAQKEL 790
Query: 190 D 192
+
Sbjct: 791 E 791
Score = 30.4 bits (67), Expect = 2.5
Identities = 16/72 (22%), Positives = 37/72 (51%)
Frame = +1
Query: 4 ATIYVSSRYLGLIIGKGGSRIREISDECNCRINIKKDQAEDDEVPVLLEGSQRNINKAKS 183
AT+ + + +IGK G +++++ + +I I + +D + + G++ I KA+
Sbjct: 153 ATVPIPKEHHRFVIGKNGEKLQDLELKTATKIQIPR--PDDPSNQIKITGTKEGIEKARH 210
Query: 184 KIDDITRRPSKR 219
++ I+ KR
Sbjct: 211 EVLLISAEQDKR 222
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,923,895
Number of Sequences: 369166
Number of extensions: 954291
Number of successful extensions: 5566
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5168
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3206272875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
