Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_022_N23
(400 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34127|MYBH_DICDI Myb-like protein 37 0.014
sp|O70601|LAT_RAT Linker for activation of T cells (36 kDa ... 37 0.014
sp|Q39234|TGA3_ARATH Transcription factor TGA3 (AtbZIP22) 37 0.018
sp|P08726|BAR6_CHITE Balbiani ring protein 6 (Giant secreto... 35 0.054
sp|O74423|ENT1_SCHPO Epsin-1 34 0.092
sp|Q6BHN9|SNX41_DEBHA Sorting nexin-41 33 0.16
sp|P12685|TRK1_YEAST High-affinity potassium transport protein 33 0.20
sp|Q6NV32|PTMA_BRARE Prothymosin alpha 33 0.27
sp|P08096|TOP2_SCHPO DNA topoisomerase 2 (DNA topoisomerase... 32 0.35
sp|Q4IRI9|CWC25_GIBZE Pre-mRNA splicing factor CWC25 32 0.35
>sp|P34127|MYBH_DICDI Myb-like protein
Length = 451
Score = 37.0 bits (84), Expect = 0.014
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +3
Query: 60 INKAKSKIDDITRRPSKRQNSDDDDRSYNSHYNNSNKRPSRRNDDDDEDRGSRRKK 227
+N A + D + S +N D+ + + N++ NN+N +DDD+D S++ +
Sbjct: 24 LNAANNTNSDNSSNNSDNENDDNQNNNNNNNNNNNNNNEEEEEEDDDDDDDSQQNR 79
>sp|O70601|LAT_RAT Linker for activation of T cells (36 kDa phospho-tyrosine adaptor
protein) (pp36) (p36-38)
Length = 241
Score = 37.0 bits (84), Expect = 0.014
Identities = 19/37 (51%), Positives = 24/37 (64%)
Frame = +3
Query: 96 RRPSKRQNSDDDDRSYNSHYNNSNKRPSRRNDDDDED 206
R PS RQNSDD NS + N+ P+R+N D+DED
Sbjct: 96 RMPSSRQNSDDA----NSVASYENQEPARKNVDEDED 128
>sp|Q39234|TGA3_ARATH Transcription factor TGA3 (AtbZIP22)
Length = 384
Score = 36.6 bits (83), Expect = 0.018
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +3
Query: 48 SQRNINKAKSKIDDITRRPSKRQNSDDDDR-SYNSHYNNSNKRPSRRNDDDDEDRGSRRK 224
S +N N++ S ++ RP +DD++R +Y S YNNS + N+D DEDR + +
Sbjct: 44 SNQNNNQSSSTTLEVDARPE----ADDNNRVNYTSVYNNSLEAEPSSNNDQDEDRINDKM 99
Query: 225 K 227
K
Sbjct: 100 K 100
>sp|P08726|BAR6_CHITE Balbiani ring protein 6 (Giant secretory protein I-C) (GSP-IC)
Length = 235
Score = 35.0 bits (79), Expect = 0.054
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Frame = +3
Query: 9 RGEDDEVPVLLEGSQRNINKAKSKIDDITRRPSKRQNSDDDDRSYNSHYNN--SNKRPSR 182
R E E P E +R + + K DD R KR+ D+++R +++ KRP
Sbjct: 28 RPERPERPERPEEPEREEPEREPKCDDEMREKVKRR-CDNENRRFDARRCECGEKKRPDD 86
Query: 183 RNDDDDEDRGSRRKK 227
+D+DDEDR R ++
Sbjct: 87 NDDNDDEDRPERPER 101
Score = 30.0 bits (66), Expect = 1.7
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = +3
Query: 9 RGEDDEVPVLLEGSQRNINKAKSKIDDITRRPSKRQNSDDDDRSYNSHYNNSNKRPSRRN 188
R E E P E +R + + K D+ R KR+ D+++R +++ ++ R +
Sbjct: 104 RPERPERPERPEEPEREEPEREPKCDEEMREKFKRR-CDNENRRFDARRCECGEK-KRPD 161
Query: 189 DDDDEDRGSRRKK 227
D+DDEDR R ++
Sbjct: 162 DNDDEDRPERPER 174
>sp|O74423|ENT1_SCHPO Epsin-1
Length = 706
Score = 34.3 bits (77), Expect = 0.092
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Frame = +3
Query: 3 SARGEDDEVPVLLEGSQ-----RNINKAKSKIDDITRRPSKRQNSDDDDRS--YNSHYNN 161
+ R + E+ LLE R ++ + + D TR S R + DDDDR+ S +
Sbjct: 124 NVRTKAKEITSLLEDEHALKEARGDSRERDRDRDRTR--SSRFDDDDDDRAPYEESRLSR 181
Query: 162 SNKRPSRRNDDDDEDRGSRRKKT 230
+ R SR +DDD + R RR ++
Sbjct: 182 APSRASRYDDDDRDHRSRRRSRS 204
Score = 31.6 bits (70), Expect = 0.59
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 90 ITRRPSKRQNSDDDDRSYNSHYNNSNKRPSR 182
++R PS+ DDDDR + S + ++RP R
Sbjct: 179 LSRAPSRASRYDDDDRDHRSRRRSRSRRPGR 209
>sp|Q6BHN9|SNX41_DEBHA Sorting nexin-41
Length = 670
Score = 33.5 bits (75), Expect = 0.16
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 105 SKRQNSDDDDRSYNSHYNNSNKRPSRRNDDDDED 206
S Q+ D D + N++YNN+N + N+ DD+D
Sbjct: 44 SNIQDKGDKDNNNNNNYNNNNNNNNNNNNGDDDD 77
>sp|P12685|TRK1_YEAST High-affinity potassium transport protein
Length = 1235
Score = 33.1 bits (74), Expect = 0.20
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = +3
Query: 117 NSDDDDRSYNSHYNNSNKRPSRRNDDDDEDRGSRRKKT 230
N +DDD SH S++R S N++++ + ++KKT
Sbjct: 1022 NDEDDDEENESHEGQSSQRSSSNNNNNNNRKKKKKKKT 1059
>sp|Q6NV32|PTMA_BRARE Prothymosin alpha
Length = 105
Score = 32.7 bits (73), Expect = 0.27
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +3
Query: 63 NKAKSKIDDITRRPSKRQNSDDDDRSYNSHYNNSNKRPSRRNDDDDEDRGSRRKKT 230
N+ + DD+ + DDD + KR + +DDD++D +++KT
Sbjct: 48 NEVDEEDDDVAEEDEEDDGEGDDDDEDEEAEGGTGKRAAEDDDDDEDDVDPKKQKT 103
>sp|P08096|TOP2_SCHPO DNA topoisomerase 2 (DNA topoisomerase II)
Length = 1485
Score = 32.3 bits (72), Expect = 0.35
Identities = 22/75 (29%), Positives = 35/75 (46%)
Frame = +3
Query: 3 SARGEDDEVPVLLEGSQRNINKAKSKIDDITRRPSKRQNSDDDDRSYNSHYNNSNKRPSR 182
S+ EDD +P L+ S KA +K K+Q+ +DDD + ++S + S
Sbjct: 1363 SSDDEDDLLPSSLKPSTITSTKASAKNKGKKASSVKKQSPEDDDDDFIIPGSSSTPKASS 1422
Query: 183 RNDDDDEDRGSRRKK 227
N + ED S +K
Sbjct: 1423 TNAEPPEDSDSPIRK 1437
>sp|Q4IRI9|CWC25_GIBZE Pre-mRNA splicing factor CWC25
Length = 393
Score = 32.3 bits (72), Expect = 0.35
Identities = 17/54 (31%), Positives = 30/54 (55%)
Frame = +3
Query: 63 NKAKSKIDDITRRPSKRQNSDDDDRSYNSHYNNSNKRPSRRNDDDDEDRGSRRK 224
+K++ K +D RR + +++D +DR + + S + RR D EDR RR+
Sbjct: 175 DKSRRK-EDRHRRRHRHRSADGEDRHHRRRRSYSRSQSPRRRDGSREDRHRRRR 227
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,691,890
Number of Sequences: 369166
Number of extensions: 669168
Number of successful extensions: 4307
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3977
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1708532300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)