Planaria EST Database

DrC_00067

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00067
         (474 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q00143|VG39_ICHV1  Hypothetical gene 39 protein                 30   2.8  
sp|P48490|PP1_PHAVU  Serine/threonine protein phosphatase PP1      29   6.3  
sp|Q8TGB8|CUTI_MONFR  Cutinase precursor (Cutin hydrolase)         29   6.3  
sp|P38131|KTR4_YEAST  Probable mannosyltransferase KTR4            28   8.2  

>sp|Q00143|VG39_ICHV1 Hypothetical gene 39 protein
          Length = 1123

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 15/67 (22%)
 Frame = -2

Query: 176 VSTRSKYLCVNQYLVVFNTYF---------------LSSMANKCSIKTGNNFSRYIFTV* 42
           V+   K +CV Q L      F               L+SM    ++ T  NF+  +F V 
Sbjct: 693 VNNMPKSICVTQALTATENLFMNIAYAAILPIFTDTLASMGGGMTVDTETNFNGMVFPVY 752

Query: 41  KSSCYIG 21
           +++C+IG
Sbjct: 753 RNACFIG 759

>sp|P48490|PP1_PHAVU Serine/threonine protein phosphatase PP1
          Length = 314

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = -1

Query: 180 LCIHQIQIFVCQPILGSFQHIFPV---LHGK*MQYQNREQLFQ 61
           LC+H  QIF+ QPIL   +    V   +HG   QYQ+  +LF+
Sbjct: 32  LCVHARQIFLSQPILLELRAPMRVCGDIHG---QYQDLLRLFE 71

>sp|Q8TGB8|CUTI_MONFR Cutinase precursor (Cutin hydrolase)
          Length = 201

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 45  NGEYIPGKVVPGFDTAFICHGGQEICVENYQVLVDTQIFG 164
           NG  + G  VP   T  ICH G  IC     +L+    +G
Sbjct: 148 NGSPVQG--VPAAKTKIICHAGDNICQHGSMILMPHLTYG 185

>sp|P38131|KTR4_YEAST Probable mannosyltransferase KTR4
          Length = 464

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -1

Query: 312 HEKVQIYPNLFYHQPLLFRYKVVF 241
           H   + Y   FYH PLL +YK V+
Sbjct: 236 HNMCRFYSKEFYHHPLLSKYKYVW 259

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,559,183
Number of Sequences: 369166
Number of extensions: 1214291
Number of successful extensions: 2523
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2522
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2783017720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00067

  1. Dr_sW_002_L06
  2. Dr_sW_007_H01