Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_L06
(316 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q00143|VG39_ICHV1 Hypothetical gene 39 protein 30 1.7
sp|P48490|PP1_PHAVU Serine/threonine protein phosphatase PP1 29 3.8
sp|Q8TGB8|CUTI_MONFR Cutinase precursor (Cutin hydrolase) 29 3.8
sp|P38131|KTR4_YEAST Probable mannosyltransferase KTR4 28 5.0
sp|Q19005|YYT6_CAEEL Hypothetical protein D2096.6 in chromo... 28 6.5
sp|P22348|PUR6_METSM Probable phosphoribosylaminoimidazole ... 28 6.5
sp|Q10014|YR01_CAEEL Hypothetical protein T25E4.1 in chromo... 28 8.5
>sp|Q00143|VG39_ICHV1 Hypothetical gene 39 protein
Length = 1123
Score = 30.0 bits (66), Expect = 1.7
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 15/67 (22%)
Frame = -3
Query: 176 VSTRSKYLCVNQYLVVFNTYF---------------LSSMANKCSIKTGNNFSRYIFTV* 42
V+ K +CV Q L F L+SM ++ T NF+ +F V
Sbjct: 693 VNNMPKSICVTQALTATENLFMNIAYAAILPIFTDTLASMGGGMTVDTETNFNGMVFPVY 752
Query: 41 KSSCYIG 21
+++C+IG
Sbjct: 753 RNACFIG 759
>sp|P48490|PP1_PHAVU Serine/threonine protein phosphatase PP1
Length = 314
Score = 28.9 bits (63), Expect = 3.8
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = -2
Query: 180 LCIHQIQIFVCQPILGSFQHIFPV---LHGK*MQYQNREQLFQ 61
LC+H QIF+ QPIL + V +HG QYQ+ +LF+
Sbjct: 32 LCVHARQIFLSQPILLELRAPMRVCGDIHG---QYQDLLRLFE 71
>sp|Q8TGB8|CUTI_MONFR Cutinase precursor (Cutin hydrolase)
Length = 201
Score = 28.9 bits (63), Expect = 3.8
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +3
Query: 45 NGEYIPGKVVPGFDTAFICHGGQEICVENYQVLVDTQIFG 164
NG + G VP T ICH G IC +L+ +G
Sbjct: 148 NGSPVQG--VPAAKTKIICHAGDNICQHGSMILMPHLTYG 185
>sp|P38131|KTR4_YEAST Probable mannosyltransferase KTR4
Length = 464
Score = 28.5 bits (62), Expect = 5.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 312 HEKVQIYPNLFYHQPLLFRYKVVF 241
H + Y FYH PLL +YK V+
Sbjct: 236 HNMCRFYSKEFYHHPLLSKYKYVW 259
>sp|Q19005|YYT6_CAEEL Hypothetical protein D2096.6 in chromosome IV
Length = 171
Score = 28.1 bits (61), Expect = 6.5
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Frame = -1
Query: 196 PVVCFPLYP----PDPNICVSTNTW*FSTHISCPPWQ-INAVSKPGTTFPGIYSP 47
P+ C P P P + C +TN+ + CP W A +P T F P
Sbjct: 59 PIECDPKRPWPQCPPQSYCYATNSVDIGPYFCCPVWSTYGAAWRPATPFYNYVPP 113
>sp|P22348|PUR6_METSM Probable phosphoribosylaminoimidazole carboxylase (AIR carboxylase)
(AIRC)
Length = 339
Score = 28.1 bits (61), Expect = 6.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -3
Query: 92 CSIKTGNNFSRYIFTV*KSSCYIGITSSNS 3
C I++G F Y+ T+ + +IGI S++S
Sbjct: 230 CPIRSGKKFRAYVNTMKNAKIFIGINSNSS 259
>sp|Q10014|YR01_CAEEL Hypothetical protein T25E4.1 in chromosome II precursor
Length = 231
Score = 27.7 bits (60), Expect = 8.5
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Frame = -1
Query: 196 PVVCFPLYP----PDPNICVSTNTW*FSTHISCPPWQ-INAVSKPGTTFPGIYSP 47
P+ C P P P + C +TN+ + CP W A +P T F P
Sbjct: 118 PIECDPKRPWPQCPPQSYCYATNSVDIGPYFCCPIWSTYGAAWRPATPFYNYVPP 172
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,834,050
Number of Sequences: 369166
Number of extensions: 789902
Number of successful extensions: 1762
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1761
length of database: 68,354,980
effective HSP length: 73
effective length of database: 54,869,325
effective search space used: 1700949075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)