Planarian EST Database

DrC_00043

Cluster detail
GO Category : Not Available
Consensus Sequence :
>DrC_00043 CGTAAACGAAATCGGAGCTTTCAACAAAGAATCGCTTAAACATATTGAAGTCCTAGAAAA GGACAGCTTACCTGATGCTGAAACATTGGCTCTTGAAAAAAAAGAACATTCTTTAAGAGA AGAAATTGAAAAAGGTACAAACTTGAAGCATGTAGAAGTAGCAGAAAAGATCGCATTGCC AACAAAAGAAGATATTGAAGCCGAGAAACAACATGCTTAACTCAATGACTTATTTGGAAT GCCGTATTTATATACAGAAAAACAATTCAATAAATTTTTGTTACTTTTAATTTTGGTTTT ATGTCGATTATTTTCTAATTAAATTTGTATTTTGTTTG

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00043
         (338 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P18281|ACTO_ACACA  Actobindin                                   37   0.014
sp|O42184|REST_CHICK  Restin (Cytoplasmic linker protein 170...    35   0.054
sp|P63312|TYB10_RAT  Thymosin beta-10 >gi|54036496|sp|Q6ZWY8...    33   0.21 
sp|P21753|TYB9_PIG  Thymosin beta-9                                33   0.27 
sp|P21752|TYB9_BOVIN  Thymosin beta-9 (Thymosin beta-10) [Co...    33   0.27 
sp|Q9I954|TYBB_CYPCA  Thymosin beta-b                              33   0.27 
sp|Q9I955|TYBA_CYPCA  Thymosin beta-a                              33   0.27 
sp|P33248|TYB12_LATJA  Thymosin beta-12                            32   0.46 
sp|P26352|TYB12_ONCMY  Thymosin beta-12                            32   0.46 
sp|P26351|TYB11_ONCMY  Thymosin beta-11                            32   0.46

>sp|P18281|ACTO_ACACA Actobindin
          Length = 88

 Score = 37.0 bits (84), Expect = 0.014
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = +2

Query: 32  SLKHIEVLEKDSLPDAETLALEKKEH-SLREEIEKGTNLKHVEVAEKIALPTKEDIEAEK 208
           +LKH E ++K S P  E + ++K +  S  EE+ K   LKH E  +K      ED+  +K
Sbjct: 14  ALKHAETVDK-SAPQIENVTVKKVDRSSFLEEVAKPHELKHAETVDKSGPAIPEDVHVKK 72

>sp|O42184|REST_CHICK Restin (Cytoplasmic linker protein 170) (CLIP-170)
          Length = 1433

 Score = 35.0 bits (79), Expect = 0.054
 Identities = 19/67 (28%), Positives = 39/67 (58%)
 Frame = +2

Query: 8    EIGAFNKESLKHIEVLEKDSLPDAETLALEKKEHSLREEIEKGTNLKHVEVAEKIALPTK 187
            E+G    E   H ++ E+ S+ + + L ++K+E +L++EI++        +++  AL T+
Sbjct: 1176 ELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESTLKKEIDEERASLQKSISDTSALITQ 1235

Query: 188  EDIEAEK 208
            +D E EK
Sbjct: 1236 KDEELEK 1242

>sp|P63312|TYB10_RAT Thymosin beta-10
 sp|Q6ZWY8|TYB10_MOUSE Thymosin beta-10
 sp|P63313|TYB10_HUMAN Thymosin beta-10
 sp|P63314|TYB10_HORSE Thymosin beta-10
          Length = 44

 Score = 33.1 bits (74), Expect = 0.21
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +2

Query: 2   VNEIGAFNKESLKHIEVLEKDSLPDAETLALEKK 103
           + EI +F+K  LK  E  EK++LP  ET+  EK+
Sbjct: 7   MGEIASFDKAKLKKTETQEKNTLPTKETIEQEKR 40

>sp|P21753|TYB9_PIG Thymosin beta-9
          Length = 41

 Score = 32.7 bits (73), Expect = 0.27
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +2

Query: 2   VNEIGAFNKESLKHIEVLEKDSLPDAETLALEKK 103
           + EI +F+K  LK  E  EK++LP  ET+  EK+
Sbjct: 6   MGEINSFDKAKLKKTETQEKNTLPTKETIEQEKQ 39


 Score = 30.4 bits (67), Expect = 1.3
 Identities = 15/23 (65%), Positives = 15/23 (65%)
 Frame = +2

Query: 143 LKHVEVAEKIALPTKEDIEAEKQ 211
           LK  E  EK  LPTKE IE EKQ
Sbjct: 17  LKKTETQEKNTLPTKETIEQEKQ 39

>sp|P21752|TYB9_BOVIN Thymosin beta-9 (Thymosin beta-10) [Contains: Thymosin beta-8]
          Length = 42

 Score = 32.7 bits (73), Expect = 0.27
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +2

Query: 2   VNEIGAFNKESLKHIEVLEKDSLPDAETLALEKK 103
           + EI +F+K  LK  E  EK++LP  ET+  EK+
Sbjct: 7   LGEINSFDKAKLKKTETQEKNTLPTKETIEQEKQ 40


 Score = 30.4 bits (67), Expect = 1.3
 Identities = 15/23 (65%), Positives = 15/23 (65%)
 Frame = +2

Query: 143 LKHVEVAEKIALPTKEDIEAEKQ 211
           LK  E  EK  LPTKE IE EKQ
Sbjct: 18  LKKTETQEKNTLPTKETIEQEKQ 40

>sp|Q9I954|TYBB_CYPCA Thymosin beta-b
          Length = 43

 Score = 32.7 bits (73), Expect = 0.27
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +2

Query: 2   VNEIGAFNKESLKHIEVLEKDSLPDAETLALEKK 103
           ++E+  F+K  LK  E  EK++LP  ET+  EK+
Sbjct: 7   ISEVSQFDKTKLKKTETQEKNTLPTKETIEQEKQ 40


 Score = 32.3 bits (72), Expect = 0.35
 Identities = 16/25 (64%), Positives = 16/25 (64%)
 Frame = +2

Query: 137 TNLKHVEVAEKIALPTKEDIEAEKQ 211
           T LK  E  EK  LPTKE IE EKQ
Sbjct: 16  TKLKKTETQEKNTLPTKETIEQEKQ 40

>sp|Q9I955|TYBA_CYPCA Thymosin beta-a
          Length = 46

 Score = 32.7 bits (73), Expect = 0.27
 Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = +2

Query: 104 EHSLREEIEKGTN--LKHVEVAEKIALPTKEDIEAEKQHA 217
           ++ ++EE+++     LK    AEK  LPTKEDI+ EK+ A
Sbjct: 3   DNPVKEEVQQFDKKCLKKTNTAEKNTLPTKEDIDQEKKAA 42


 Score = 28.1 bits (61), Expect = 6.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 8   EIGAFNKESLKHIEVLEKDSLPDAETLALEKK 103
           E+  F+K+ LK     EK++LP  E +  EKK
Sbjct: 9   EVQQFDKKCLKKTNTAEKNTLPTKEDIDQEKK 40

>sp|P33248|TYB12_LATJA Thymosin beta-12
          Length = 43

 Score = 32.0 bits (71), Expect = 0.46
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 2   VNEIGAFNKESLKHIEVLEKDSLPDAETLALEK 100
           ++E+ +F+K  LK  E  EK+ LP  ET+  EK
Sbjct: 6   ISEVTSFDKTKLKKTETQEKNPLPSKETIEQEK 38

>sp|P26352|TYB12_ONCMY Thymosin beta-12
          Length = 42

 Score = 32.0 bits (71), Expect = 0.46
 Identities = 16/25 (64%), Positives = 16/25 (64%)
 Frame = +2

Query: 137 TNLKHVEVAEKIALPTKEDIEAEKQ 211
           T LK  E  EK  LPTKE IE EKQ
Sbjct: 15  TKLKKTETQEKNPLPTKETIEQEKQ 39


 Score = 30.0 bits (66), Expect = 1.7
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 8   EIGAFNKESLKHIEVLEKDSLPDAETLALEKK 103
           E+  F+K  LK  E  EK+ LP  ET+  EK+
Sbjct: 8   EVSNFDKTKLKKTETQEKNPLPTKETIEQEKQ 39

>sp|P26351|TYB11_ONCMY Thymosin beta-11
          Length = 42

 Score = 32.0 bits (71), Expect = 0.46
 Identities = 16/25 (64%), Positives = 16/25 (64%)
 Frame = +2

Query: 137 TNLKHVEVAEKIALPTKEDIEAEKQ 211
           T LK  E  EK  LPTKE IE EKQ
Sbjct: 16  TKLKKTETQEKNPLPTKETIEQEKQ 40


 Score = 31.6 bits (70), Expect = 0.60
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +2

Query: 2   VNEIGAFNKESLKHIEVLEKDSLPDAETLALEKK 103
           + E+ +F+K  LK  E  EK+ LP  ET+  EK+
Sbjct: 7   LEEVASFDKTKLKKTETQEKNPLPTKETIEQEKQ 40

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,599,608
Number of Sequences: 369166
Number of extensions: 488401
Number of successful extensions: 1906
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1905
length of database: 68,354,980
effective HSP length: 80
effective length of database: 53,576,180
effective search space used: 1714437760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00043

Planaria EST Database

DrC_00043

BLASTX 2.2.13 [Nov-27-2005]

Cluster detail