Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_B02
(338 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P18281|ACTO_ACACA Actobindin 37 0.014
sp|O42184|REST_CHICK Restin (Cytoplasmic linker protein 170... 35 0.054
sp|P63312|TYB10_RAT Thymosin beta-10 >gi|54036496|sp|Q6ZWY8... 33 0.21
sp|P21753|TYB9_PIG Thymosin beta-9 33 0.27
sp|P21752|TYB9_BOVIN Thymosin beta-9 (Thymosin beta-10) [Co... 33 0.27
sp|Q9I954|TYBB_CYPCA Thymosin beta-b 33 0.27
sp|Q9I955|TYBA_CYPCA Thymosin beta-a 33 0.27
sp|P33248|TYB12_LATJA Thymosin beta-12 32 0.46
sp|P26352|TYB12_ONCMY Thymosin beta-12 32 0.46
sp|P26351|TYB11_ONCMY Thymosin beta-11 32 0.46
>sp|P18281|ACTO_ACACA Actobindin
Length = 88
Score = 37.0 bits (84), Expect = 0.014
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 32 SLKHIEVLEKDSLPDAETLALEKKEH-SLREEIEKGTNLKHVEVAEKIALPTKEDIEAEK 208
+LKH E ++K S P E + ++K + S EE+ K LKH E +K ED+ +K
Sbjct: 14 ALKHAETVDK-SAPQIENVTVKKVDRSSFLEEVAKPHELKHAETVDKSGPAIPEDVHVKK 72
>sp|O42184|REST_CHICK Restin (Cytoplasmic linker protein 170) (CLIP-170)
Length = 1433
Score = 35.0 bits (79), Expect = 0.054
Identities = 19/67 (28%), Positives = 39/67 (58%)
Frame = +2
Query: 8 EIGAFNKESLKHIEVLEKDSLPDAETLALEKKEHSLREEIEKGTNLKHVEVAEKIALPTK 187
E+G E H ++ E+ S+ + + L ++K+E +L++EI++ +++ AL T+
Sbjct: 1176 ELGRSRDEVTSHQKLEEERSVLNNQLLEMKKRESTLKKEIDEERASLQKSISDTSALITQ 1235
Query: 188 EDIEAEK 208
+D E EK
Sbjct: 1236 KDEELEK 1242
>sp|P63312|TYB10_RAT Thymosin beta-10
sp|Q6ZWY8|TYB10_MOUSE Thymosin beta-10
sp|P63313|TYB10_HUMAN Thymosin beta-10
sp|P63314|TYB10_HORSE Thymosin beta-10
Length = 44
Score = 33.1 bits (74), Expect = 0.21
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 2 VNEIGAFNKESLKHIEVLEKDSLPDAETLALEKK 103
+ EI +F+K LK E EK++LP ET+ EK+
Sbjct: 7 MGEIASFDKAKLKKTETQEKNTLPTKETIEQEKR 40
>sp|P21753|TYB9_PIG Thymosin beta-9
Length = 41
Score = 32.7 bits (73), Expect = 0.27
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 2 VNEIGAFNKESLKHIEVLEKDSLPDAETLALEKK 103
+ EI +F+K LK E EK++LP ET+ EK+
Sbjct: 6 MGEINSFDKAKLKKTETQEKNTLPTKETIEQEKQ 39
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/23 (65%), Positives = 15/23 (65%)
Frame = +2
Query: 143 LKHVEVAEKIALPTKEDIEAEKQ 211
LK E EK LPTKE IE EKQ
Sbjct: 17 LKKTETQEKNTLPTKETIEQEKQ 39
>sp|P21752|TYB9_BOVIN Thymosin beta-9 (Thymosin beta-10) [Contains: Thymosin beta-8]
Length = 42
Score = 32.7 bits (73), Expect = 0.27
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 2 VNEIGAFNKESLKHIEVLEKDSLPDAETLALEKK 103
+ EI +F+K LK E EK++LP ET+ EK+
Sbjct: 7 LGEINSFDKAKLKKTETQEKNTLPTKETIEQEKQ 40
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/23 (65%), Positives = 15/23 (65%)
Frame = +2
Query: 143 LKHVEVAEKIALPTKEDIEAEKQ 211
LK E EK LPTKE IE EKQ
Sbjct: 18 LKKTETQEKNTLPTKETIEQEKQ 40
>sp|Q9I954|TYBB_CYPCA Thymosin beta-b
Length = 43
Score = 32.7 bits (73), Expect = 0.27
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 2 VNEIGAFNKESLKHIEVLEKDSLPDAETLALEKK 103
++E+ F+K LK E EK++LP ET+ EK+
Sbjct: 7 ISEVSQFDKTKLKKTETQEKNTLPTKETIEQEKQ 40
Score = 32.3 bits (72), Expect = 0.35
Identities = 16/25 (64%), Positives = 16/25 (64%)
Frame = +2
Query: 137 TNLKHVEVAEKIALPTKEDIEAEKQ 211
T LK E EK LPTKE IE EKQ
Sbjct: 16 TKLKKTETQEKNTLPTKETIEQEKQ 40
>sp|Q9I955|TYBA_CYPCA Thymosin beta-a
Length = 46
Score = 32.7 bits (73), Expect = 0.27
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = +2
Query: 104 EHSLREEIEKGTN--LKHVEVAEKIALPTKEDIEAEKQHA 217
++ ++EE+++ LK AEK LPTKEDI+ EK+ A
Sbjct: 3 DNPVKEEVQQFDKKCLKKTNTAEKNTLPTKEDIDQEKKAA 42
Score = 28.1 bits (61), Expect = 6.6
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +2
Query: 8 EIGAFNKESLKHIEVLEKDSLPDAETLALEKK 103
E+ F+K+ LK EK++LP E + EKK
Sbjct: 9 EVQQFDKKCLKKTNTAEKNTLPTKEDIDQEKK 40
>sp|P33248|TYB12_LATJA Thymosin beta-12
Length = 43
Score = 32.0 bits (71), Expect = 0.46
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 2 VNEIGAFNKESLKHIEVLEKDSLPDAETLALEK 100
++E+ +F+K LK E EK+ LP ET+ EK
Sbjct: 6 ISEVTSFDKTKLKKTETQEKNPLPSKETIEQEK 38
>sp|P26352|TYB12_ONCMY Thymosin beta-12
Length = 42
Score = 32.0 bits (71), Expect = 0.46
Identities = 16/25 (64%), Positives = 16/25 (64%)
Frame = +2
Query: 137 TNLKHVEVAEKIALPTKEDIEAEKQ 211
T LK E EK LPTKE IE EKQ
Sbjct: 15 TKLKKTETQEKNPLPTKETIEQEKQ 39
Score = 30.0 bits (66), Expect = 1.7
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +2
Query: 8 EIGAFNKESLKHIEVLEKDSLPDAETLALEKK 103
E+ F+K LK E EK+ LP ET+ EK+
Sbjct: 8 EVSNFDKTKLKKTETQEKNPLPTKETIEQEKQ 39
>sp|P26351|TYB11_ONCMY Thymosin beta-11
Length = 42
Score = 32.0 bits (71), Expect = 0.46
Identities = 16/25 (64%), Positives = 16/25 (64%)
Frame = +2
Query: 137 TNLKHVEVAEKIALPTKEDIEAEKQ 211
T LK E EK LPTKE IE EKQ
Sbjct: 16 TKLKKTETQEKNPLPTKETIEQEKQ 40
Score = 31.6 bits (70), Expect = 0.60
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 2 VNEIGAFNKESLKHIEVLEKDSLPDAETLALEKK 103
+ E+ +F+K LK E EK+ LP ET+ EK+
Sbjct: 7 LEEVASFDKTKLKKTETQEKNPLPTKETIEQEKQ 40
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,104,860
Number of Sequences: 369166
Number of extensions: 533150
Number of successful extensions: 1906
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1905
length of database: 68,354,980
effective HSP length: 80
effective length of database: 53,576,180
effective search space used: 1714437760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)