Planaria EST Database

DrC_00035

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00035
         (563 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P52375|HEPA_HHV6U  DNA helicase/primase complex associate...    32   1.1  
sp|P52451|HEPA_HHV6Z  DNA helicase/primase complex associate...    31   1.9  
sp|P11835|ITB2_MOUSE  Integrin beta-2 precursor (Cell surfac...    30   3.2  
sp|O94892|ZN432_HUMAN  Zinc finger protein 432                     30   4.1  
sp|P08625|NIFH2_METTL  Nitrogenase iron protein 2 (Nitrogena...    29   7.0  
sp|P91758|CRNF_LYMST  Cysteine-rich neurotrophic factor prec...    29   7.0  
sp|P06820|NRAM_IATOK  Neuraminidase                                29   9.2  
sp|P03473|NRAM_IANT6  Neuraminidase                                29   9.2  

>sp|P52375|HEPA_HHV6U DNA helicase/primase complex associated protein
          Length = 662

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = -3

Query: 192 SIFVSNSEAGTCRNTCYTSYAQCNKLCYRRGPYDENCFFRCANQYNQCIQNCISK*VNKS 13
           SI +  SE    R    + Y     LC++ GP D + FF  ++ Y   + +C+   +  +
Sbjct: 331 SIEMPGSETSLQRFRFNSQYVSSESLCFQTGPEDTHLFFSDSDMYVVTLPDCLRLLLKST 390

Query: 12  INK 4
           + K
Sbjct: 391 VPK 393

>sp|P52451|HEPA_HHV6Z DNA helicase/primase complex associated protein
          Length = 662

 Score = 31.2 bits (69), Expect = 1.9
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -3

Query: 192 SIFVSNSEAGTCRNTCYTSYAQCNKLCYRRGPYDENCFFRCANQYNQCIQNCI 34
           S+ +  SE    R    + Y     LC++ GP D + FF  ++ Y   + +C+
Sbjct: 331 SVEMPGSETSLQRFRFNSQYVSSESLCFQTGPEDTHLFFSDSDMYVVTLPDCL 383

>sp|P11835|ITB2_MOUSE Integrin beta-2 precursor (Cell surface adhesion glycoproteins
           LFA-1/CR3/P150,95 beta-subunit) (CD18) (Complement
           receptor C3 beta-subunit)
          Length = 771

 Score = 30.4 bits (67), Expect = 3.2
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = -3

Query: 159 CRNTCYTSYAQCNKLCYRRGPYDENCFFRCANQYNQCI 46
           CR+  +TS A+C K  + +GP+++NC  +CA    Q I
Sbjct: 623 CRDN-HTSCAECLK--FDKGPFEKNCSVQCAGMTLQTI 657

>sp|O94892|ZN432_HUMAN Zinc finger protein 432
          Length = 652

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = +3

Query: 39  NSEYIDCIDLHIGKNSFHRMAHVYNKACCIAHN*YNKYFDKFQLHYLTQKSNLSIIKQSK 218
           N   +  ++ +   N+F   A      C    N      D F+L+  T KSNLS++ Q+K
Sbjct: 94  NQRMLKSVEQYHEHNAFGNTASQTKSLCLFREN-----HDTFELYIKTLKSNLSLVNQNK 148

>sp|P08625|NIFH2_METTL Nitrogenase iron protein 2 (Nitrogenase component II) (Nitrogenase
           Fe protein 2) (Nitrogenase reductase)
          Length = 292

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 10/29 (34%), Positives = 23/29 (79%)
 Frame = +1

Query: 274 VILMLNVLSMLNILKDMQVDVDLYEIRVD 360
           VI+++++L  +N+ KD+++D+ LY++  D
Sbjct: 111 VIVVIDLLKKMNLYKDLKLDIVLYDVLGD 139

>sp|P91758|CRNF_LYMST Cysteine-rich neurotrophic factor precursor (CRNF)
          Length = 121

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -3

Query: 159 CRNTCYTSYAQCNKLCYRRGPYDENCFFRC 70
           CR  CY  Y QC   C    P    CF  C
Sbjct: 73  CRTQCYKVYDQCTSDCPYTVPNPYECFTTC 102

>sp|P06820|NRAM_IATOK Neuraminidase
          Length = 469

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 182 TKIEFINNKTIQNEIIPRAVWIYDWA 259
           T+I ++NN TI+ EI P+ V   +W+
Sbjct: 63  TEIVYLNNTTIEKEICPKVVEYRNWS 88

>sp|P03473|NRAM_IANT6 Neuraminidase
          Length = 469

 Score = 28.9 bits (63), Expect = 9.2
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 182 TKIEFINNKTIQNEIIPRAVWIYDWA 259
           T+I ++NN TI+ EI P+ V   +W+
Sbjct: 63  TEIVYLNNTTIEKEICPKVVEYRNWS 88

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,395,476
Number of Sequences: 369166
Number of extensions: 1063856
Number of successful extensions: 2545
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2539
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4078830820
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00035

  1. Dr_sW_026_P12
  2. Dr_sW_001_O08