Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_O08
(563 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P52375|HEPA_HHV6U DNA helicase/primase complex associate... 32 1.1
sp|P52451|HEPA_HHV6Z DNA helicase/primase complex associate... 31 1.9
sp|P11835|ITB2_MOUSE Integrin beta-2 precursor (Cell surfac... 30 3.2
sp|O94892|ZN432_HUMAN Zinc finger protein 432 30 4.1
sp|P08625|NIFH2_METTL Nitrogenase iron protein 2 (Nitrogena... 29 7.0
sp|P91758|CRNF_LYMST Cysteine-rich neurotrophic factor prec... 29 7.0
sp|P06820|NRAM_IATOK Neuraminidase 29 9.2
sp|P03473|NRAM_IANT6 Neuraminidase 29 9.2
>sp|P52375|HEPA_HHV6U DNA helicase/primase complex associated protein
Length = 662
Score = 32.0 bits (71), Expect = 1.1
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +3
Query: 372 SIFVSNSEAGTCRNTCYTSYAQCNKLCYRRGPYDENCFFRCANQYNQCIQNCISK*VNKS 551
SI + SE R + Y LC++ GP D + FF ++ Y + +C+ + +
Sbjct: 331 SIEMPGSETSLQRFRFNSQYVSSESLCFQTGPEDTHLFFSDSDMYVVTLPDCLRLLLKST 390
Query: 552 INK 560
+ K
Sbjct: 391 VPK 393
>sp|P52451|HEPA_HHV6Z DNA helicase/primase complex associated protein
Length = 662
Score = 31.2 bits (69), Expect = 1.9
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 372 SIFVSNSEAGTCRNTCYTSYAQCNKLCYRRGPYDENCFFRCANQYNQCIQNCI 530
S+ + SE R + Y LC++ GP D + FF ++ Y + +C+
Sbjct: 331 SVEMPGSETSLQRFRFNSQYVSSESLCFQTGPEDTHLFFSDSDMYVVTLPDCL 383
>sp|P11835|ITB2_MOUSE Integrin beta-2 precursor (Cell surface adhesion glycoproteins
LFA-1/CR3/P150,95 beta-subunit) (CD18) (Complement
receptor C3 beta-subunit)
Length = 771
Score = 30.4 bits (67), Expect = 3.2
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +3
Query: 405 CRNTCYTSYAQCNKLCYRRGPYDENCFFRCANQYNQCI 518
CR+ +TS A+C K + +GP+++NC +CA Q I
Sbjct: 623 CRDN-HTSCAECLK--FDKGPFEKNCSVQCAGMTLQTI 657
>sp|O94892|ZN432_HUMAN Zinc finger protein 432
Length = 652
Score = 30.0 bits (66), Expect = 4.1
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -3
Query: 525 NSEYIDCIDLHIGKNSFHRMAHVYNKACCIAHN*YNKYFDKFQLHYLTQKSNLSIIKQSK 346
N + ++ + N+F A C N D F+L+ T KSNLS++ Q+K
Sbjct: 94 NQRMLKSVEQYHEHNAFGNTASQTKSLCLFREN-----HDTFELYIKTLKSNLSLVNQNK 148
>sp|P08625|NIFH2_METTL Nitrogenase iron protein 2 (Nitrogenase component II) (Nitrogenase
Fe protein 2) (Nitrogenase reductase)
Length = 292
Score = 29.3 bits (64), Expect = 7.0
Identities = 10/29 (34%), Positives = 23/29 (79%)
Frame = -1
Query: 290 VILMLNVLSMLNILKDMQVDVDLYEIRVD 204
VI+++++L +N+ KD+++D+ LY++ D
Sbjct: 111 VIVVIDLLKKMNLYKDLKLDIVLYDVLGD 139
>sp|P91758|CRNF_LYMST Cysteine-rich neurotrophic factor precursor (CRNF)
Length = 121
Score = 29.3 bits (64), Expect = 7.0
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +3
Query: 405 CRNTCYTSYAQCNKLCYRRGPYDENCFFRC 494
CR CY Y QC C P CF C
Sbjct: 73 CRTQCYKVYDQCTSDCPYTVPNPYECFTTC 102
>sp|P06820|NRAM_IATOK Neuraminidase
Length = 469
Score = 28.9 bits (63), Expect = 9.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 382 TKIEFINNKTIQNEIIPRAVWIYDWA 305
T+I ++NN TI+ EI P+ V +W+
Sbjct: 63 TEIVYLNNTTIEKEICPKVVEYRNWS 88
>sp|P03473|NRAM_IANT6 Neuraminidase
Length = 469
Score = 28.9 bits (63), Expect = 9.2
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = -2
Query: 382 TKIEFINNKTIQNEIIPRAVWIYDWA 305
T+I ++NN TI+ EI P+ V +W+
Sbjct: 63 TEIVYLNNTTIEKEICPKVVEYRNWS 88
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,395,476
Number of Sequences: 369166
Number of extensions: 1063856
Number of successful extensions: 2545
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2539
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4078830820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)