Planaria EST Database

DrC_00020

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00020
         (458 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8Y7F0|ENGC2_LISMO  Probable GTPase engC 2                      29   4.4  
sp|Q9P2G4|K1383_HUMAN  Protein KIAA1383                            28   9.8  
sp|Q08942|NRKA_TRYBB  Putative serine/threonine-protein kina...    28   9.8  
sp|P91766|ACH1_MANSE  Acetylcholine receptor protein, alpha-...    28   9.8  
sp|Q03428|NRKB_TRYBB  Putative serine/threonine-protein kina...    28   9.8  

>sp|Q8Y7F0|ENGC2_LISMO Probable GTPase engC 2
          Length = 346

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 185 CILQDNSHTHKNNCLIRRYIKTSNITMEH 271
           C   D SHT + NC ++  ++   +TM+H
Sbjct: 271 CRFHDCSHTQEPNCAVQAALEDGTLTMQH 299

>sp|Q9P2G4|K1383_HUMAN Protein KIAA1383
          Length = 905

 Score = 28.1 bits (61), Expect = 9.8
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 247 DIKYNNGAPMPPYPVNLNQENPPPYNLEFVV 339
           D++ N   P P Y  NL QE PPP   +  +
Sbjct: 293 DMETNIFCPPPLYYTNLTQEKPPPAQAKITI 323

>sp|Q08942|NRKA_TRYBB Putative serine/threonine-protein kinase A
          Length = 431

 Score = 28.1 bits (61), Expect = 9.8
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 170 LHLQLCILQDNSHTHKNNCLIRRYIKTSNITM 265
           L LQLC+  D  H+HK   ++ R IK++N+ +
Sbjct: 127 LFLQLCLALDYIHSHK---MLHRDIKSANVLL 155

>sp|P91766|ACH1_MANSE Acetylcholine receptor protein, alpha-like subunit precursor
           (MARA1)
          Length = 516

 Score = 28.1 bits (61), Expect = 9.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -3

Query: 258 IFDVLIYRRIRQLFLWVWELSWRIHNCKWRPHEFG 154
           + DV +  +I    LWV E SW  +   W P E+G
Sbjct: 61  LIDVNLKNQIMTTNLWV-EQSWYDYKLSWEpreYG 94

>sp|Q03428|NRKB_TRYBB Putative serine/threonine-protein kinase B
          Length = 431

 Score = 28.1 bits (61), Expect = 9.8
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +2

Query: 170 LHLQLCILQDNSHTHKNNCLIRRYIKTSNITM 265
           L LQLC+  D  H+HK   ++ R IK++N+ +
Sbjct: 127 LFLQLCLALDYIHSHK---MLHRDIKSANVLL 155

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,079,741
Number of Sequences: 369166
Number of extensions: 787688
Number of successful extensions: 1756
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1754
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2534533995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00020

  1. Dr_sW_001_I04
  2. Dr_sW_019_G07