Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_019_G07
(393 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8Y7F0|ENGC2_LISMO Probable GTPase engC 2 29 3.0
sp|Q08942|NRKA_TRYBB Putative serine/threonine-protein kina... 28 6.6
sp|P91766|ACH1_MANSE Acetylcholine receptor protein, alpha-... 28 6.6
sp|Q03428|NRKB_TRYBB Putative serine/threonine-protein kina... 28 6.6
sp|Q9P2G4|K1383_HUMAN Protein KIAA1383 28 8.6
>sp|Q8Y7F0|ENGC2_LISMO Probable GTPase engC 2
Length = 346
Score = 29.3 bits (64), Expect = 3.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 120 CILQDNSHTHKNNCLIRRYIKTSNITMEH 206
C D SHT + NC ++ ++ +TM+H
Sbjct: 271 CRFHDCSHTQEPNCAVQAALEDGTLTMQH 299
>sp|Q08942|NRKA_TRYBB Putative serine/threonine-protein kinase A
Length = 431
Score = 28.1 bits (61), Expect = 6.6
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 105 LHLQLCILQDNSHTHKNNCLIRRYIKTSNITM 200
L LQLC+ D H+HK ++ R IK++N+ +
Sbjct: 127 LFLQLCLALDYIHSHK---MLHRDIKSANVLL 155
>sp|P91766|ACH1_MANSE Acetylcholine receptor protein, alpha-like subunit precursor
(MARA1)
Length = 516
Score = 28.1 bits (61), Expect = 6.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 193 IFDVLIYRRIRQLFLWVWELSWRIHNCKWRPHEFG 89
+ DV + +I LWV E SW + W P E+G
Sbjct: 61 LIDVNLKNQIMTTNLWV-EQSWYDYKLSWEpreYG 94
>sp|Q03428|NRKB_TRYBB Putative serine/threonine-protein kinase B
Length = 431
Score = 28.1 bits (61), Expect = 6.6
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +3
Query: 105 LHLQLCILQDNSHTHKNNCLIRRYIKTSNITM 200
L LQLC+ D H+HK ++ R IK++N+ +
Sbjct: 127 LFLQLCLALDYIHSHK---MLHRDIKSANVLL 155
>sp|Q9P2G4|K1383_HUMAN Protein KIAA1383
Length = 905
Score = 27.7 bits (60), Expect = 8.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +2
Query: 182 DIKYNNGAPMPPYPVNLNQENPPP 253
D++ N P P Y NL QE PPP
Sbjct: 293 DMETNIFCPPPLYYTNLTQEKPPP 316
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,864,696
Number of Sequences: 369166
Number of extensions: 639524
Number of successful extensions: 1503
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1500
length of database: 68,354,980
effective HSP length: 96
effective length of database: 50,620,420
effective search space used: 1721094280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)