Planaria EST Database

DrC_00003

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00003
         (435 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9CPQ3|TOM22_MOUSE  Mitochondrial import receptor subunit...    35   0.069
sp|Q9NS69|TOM22_HUMAN  Mitochondrial import receptor subunit...    34   0.12 

>sp|Q9CPQ3|TOM22_MOUSE Mitochondrial import receptor subunit TOM22 homolog (Translocase of
           outer membrane 22 kDa subunit homolog)
          Length = 142

 Score = 35.0 bits (79), Expect = 0.069
 Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
 Frame = +1

Query: 13  DENFWERIIGLTEMFPEXXXXXXXXXXXXXXXXXXXXYTIIRNAGWILASXXXXXXXXXX 192
           DE   ER+ GLTEMFPE                    Y   R A WI  +          
Sbjct: 41  DETLSERLWGLTEMFPERVRSAAGATFDLSLFVAQKMYRFSRAALWIGTTSFMILVLPVV 100

Query: 193 FEGLRDKALAEDADQQKKLMFGPQS--DGGF--TIPP 291
           FE  + +   +   QQ++++ GP +   GG    +PP
Sbjct: 101 FETEKLQMEQQQQLQQRQILLGPNTGLSGGMPGALPP 137

>sp|Q9NS69|TOM22_HUMAN Mitochondrial import receptor subunit TOM22 homolog (Translocase of
           outer membrane 22 kDa subunit homolog) (hTom22) (1C9-2)
          Length = 142

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 23/85 (27%), Positives = 33/85 (38%)
 Frame = +1

Query: 13  DENFWERIIGLTEMFPEXXXXXXXXXXXXXXXXXXXXYTIIRNAGWILASXXXXXXXXXX 192
           DE   ER+ GLTEMFPE                    Y   R A WI  +          
Sbjct: 41  DETLSERLWGLTEMFPERVRSAAGATFDLSLFVAQKMYRFSRAALWIGTTSFMILVLPVV 100

Query: 193 FEGLRDKALAEDADQQKKLMFGPQS 267
           FE  + +   +   QQ++++ GP +
Sbjct: 101 FETEKLQMEQQQQLQQRQILLGPNT 125

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,261,785
Number of Sequences: 369166
Number of extensions: 698029
Number of successful extensions: 1114
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2194785120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00003

  1. Dr_sW_024_N16
  2. Dr_sW_001_A18