Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_A18
(435 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CPQ3|TOM22_MOUSE Mitochondrial import receptor subunit... 35 0.069
sp|Q9NS69|TOM22_HUMAN Mitochondrial import receptor subunit... 34 0.12
>sp|Q9CPQ3|TOM22_MOUSE Mitochondrial import receptor subunit TOM22 homolog (Translocase of
outer membrane 22 kDa subunit homolog)
Length = 142
Score = 35.0 bits (79), Expect = 0.069
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Frame = +1
Query: 13 DENFWERIIGLTEMFPEXXXXXXXXXXXXXXXXXXXXYTIIRNAGWILASXXXXXXXXXX 192
DE ER+ GLTEMFPE Y R A WI +
Sbjct: 41 DETLSERLWGLTEMFPERVRSAAGATFDLSLFVAQKMYRFSRAALWIGTTSFMILVLPVV 100
Query: 193 FEGLRDKALAEDADQQKKLMFGPQS--DGGF--TIPP 291
FE + + + QQ++++ GP + GG +PP
Sbjct: 101 FETEKLQMEQQQQLQQRQILLGPNTGLSGGMPGALPP 137
>sp|Q9NS69|TOM22_HUMAN Mitochondrial import receptor subunit TOM22 homolog (Translocase of
outer membrane 22 kDa subunit homolog) (hTom22) (1C9-2)
Length = 142
Score = 34.3 bits (77), Expect = 0.12
Identities = 23/85 (27%), Positives = 33/85 (38%)
Frame = +1
Query: 13 DENFWERIIGLTEMFPEXXXXXXXXXXXXXXXXXXXXYTIIRNAGWILASXXXXXXXXXX 192
DE ER+ GLTEMFPE Y R A WI +
Sbjct: 41 DETLSERLWGLTEMFPERVRSAAGATFDLSLFVAQKMYRFSRAALWIGTTSFMILVLPVV 100
Query: 193 FEGLRDKALAEDADQQKKLMFGPQS 267
FE + + + QQ++++ GP +
Sbjct: 101 FETEKLQMEQQQQLQQRQILLGPNT 125
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,261,785
Number of Sequences: 369166
Number of extensions: 698029
Number of successful extensions: 1114
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2194785120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)