Planaria EST Database


DrC_03075

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_03075
         (554 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P35208|SPT10_YEAST  SPT10 protein                               35   0.095
sp|P59047|NALP5_HUMAN  NACHT-, LRR- and PYD-containing prote...    34   0.21 
sp|P10775|RINI_PIG  Ribonuclease inhibitor (Ribonuclease/ang...    33   0.36 
sp|Q9C000|NALP1_HUMAN  NACHT-, LRR- and PYD-containing prote...    33   0.47 
sp|Q96P20|CIAS1_HUMAN  Cold autoinflammatory syndrome 1 prot...    33   0.47 
sp|Q9Y239|CARD4_HUMAN  Caspase recruitment domain protein 4 ...    32   1.4  
sp|Q8HZP9|RINI_PANTR  Ribonuclease inhibitor (Ribonuclease/a...    32   1.4  
sp|Q86W24|NAL14_HUMAN  NACHT-, LRR- and PYD-containing prote...    31   1.8  
sp|P13489|RINI_HUMAN  Ribonuclease inhibitor (Ribonuclease/a...    31   2.3  
sp|Q59801|HYSA_STAAU  Hyaluronate lyase precursor (Hyaluroni...    30   3.0  
>sp|P35208|SPT10_YEAST SPT10 protein
          Length = 640

 Score = 35.4 bits (80), Expect = 0.095
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
 Frame = +2

Query: 377 LLKTIIANSKDLEDIDLFGNDI--GDLGSRQLLEGLMMRKVNKLPQIGIRVGHRINQDTF 550
           L++T I  SK L     F   I   ++G R++LEGL  R++ KLP+ GI  G  +  D+F
Sbjct: 204 LMETFIEWSKKLGFTSSFFPLIYGTNVGIRRILEGLNFRRIGKLPEAGILKGFDVPVDSF 263
>sp|P59047|NALP5_HUMAN NACHT-, LRR- and PYD-containing protein 5 (Mater protein homolog)
          Length = 1200

 Score = 34.3 bits (77), Expect = 0.21
 Identities = 18/51 (35%), Positives = 31/51 (60%)
 Frame = +2

Query: 368  CMQLLKTIIANSKDLEDIDLFGNDIGDLGSRQLLEGLMMRKVNKLPQIGIR 520
            C + L  +I+ S+ L+ +DL  N +GD G   L EGL  +K + L ++G++
Sbjct: 1053 CCESLSCVISRSRHLKSLDLTDNALGDGGVAALCEGL-KQKNSVLTRLGLK 1102
>sp|P10775|RINI_PIG Ribonuclease inhibitor (Ribonuclease/angiogenin inhibitor 1)
          Length = 456

 Score = 33.5 bits (75), Expect = 0.36
 Identities = 21/63 (33%), Positives = 31/63 (49%)
 Frame = +2

Query: 293 QIEKLRLADNGIDQMGRGGNFAPMRCMQLLKTIIANSKDLEDIDLFGNDIGDLGSRQLLE 472
           Q+E LRL + G+          P  C  L   I+A+   L ++DL  N +GD G  +L  
Sbjct: 195 QLETLRLENCGL---------TPANCKDLCG-IVASQASLRELDLGSNGLGDAGIAELCP 244

Query: 473 GLM 481
           GL+
Sbjct: 245 GLL 247
>sp|Q9C000|NALP1_HUMAN NACHT-, LRR- and PYD-containing protein 2 (Death effector
            filament-forming ced-4-like apoptosis protein)
            (Nucleotide-binding domain and caspase recruitment
            domain) (Caspase recruitment domain protein 7)
          Length = 1473

 Score = 33.1 bits (74), Expect = 0.47
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = +2

Query: 368  CMQLLKTIIANSKDLEDIDLFGNDIGDLGSRQLLEGL 478
            C Q L ++++ S  L+++DL  N++ D+G R L EGL
Sbjct: 910  CCQDLASVLSASPSLKELDLQQNNLDDVGVRLLCEGL 946
>sp|Q96P20|CIAS1_HUMAN Cold autoinflammatory syndrome 1 protein (Cryopyrin) (NACHT-, LRR-
            and PYD-containing protein 3) (PYRIN-containing
            APAF1-like protein 1) (Angiotensin/vasopressin receptor
            AII/AVP-like)
          Length = 1034

 Score = 33.1 bits (74), Expect = 0.47
 Identities = 17/62 (27%), Positives = 34/62 (54%)
 Frame = +2

Query: 296  IEKLRLADNGIDQMGRGGNFAPMRCMQLLKTIIANSKDLEDIDLFGNDIGDLGSRQLLEG 475
            ++KL L ++G+  +          C   L ++++ +++L  + L GN +GD G + L EG
Sbjct: 884  LQKLGLVNSGLTSV----------CCSALSSVLSTNQNLTHLYLRGNTLGDKGIKLLCEG 933

Query: 476  LM 481
            L+
Sbjct: 934  LL 935

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 368  CMQLLKTIIANSKDLEDIDLFGNDIGDLGSRQLLEGL 478
            C   L T++ +S+ L  + L  ND+GDLG     E L
Sbjct: 955  CCWDLSTLLTSSQSLRKLSLGNNDLGDLGVMMFCEVL 991
>sp|Q9Y239|CARD4_HUMAN Caspase recruitment domain protein 4 (Nod1 protein)
          Length = 953

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 323 GIDQMGRGGNFAPMRCMQLLKTIIANSKDLEDIDLFGNDIGDLGSRQLLEGL 478
           G+  +  G N       + L   + NSK + ++ ++GN +GD G++   E L
Sbjct: 785 GLTHLKLGKNKITSEGGKYLALAVKNSKSISEVGMWGNQVGDEGAKAFAEAL 836
>sp|Q8HZP9|RINI_PANTR Ribonuclease inhibitor (Ribonuclease/angiogenin inhibitor 1)
          Length = 461

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 15/77 (19%)
 Frame = +2

Query: 293 QIEKLRLADNGIDQMGRG---------------GNFAPMRCMQLLKTIIANSKDLEDIDL 427
           QI   RL D G+ ++ +G                + +   C  L  T++AN   L ++DL
Sbjct: 347 QISNNRLEDAGVQELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS-LRELDL 405

Query: 428 FGNDIGDLGSRQLLEGL 478
             N +GD G  QL+E +
Sbjct: 406 SNNCLGDAGILQLVESV 422
>sp|Q86W24|NAL14_HUMAN NACHT-, LRR- and PYD-containing protein 14 (Nucleotide-binding
           oligomerization domain protein 5)
          Length = 1093

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +2

Query: 374 QLLKTIIANSKDLEDIDLFGNDIGDLGSRQLLEGL 478
           Q + T + ++K+L  +DL G+DIGD G + L E L
Sbjct: 719 QDISTSLIHNKNLMHLDLKGSDIGDNGVKSLCEAL 753
>sp|P13489|RINI_HUMAN Ribonuclease inhibitor (Ribonuclease/angiogenin inhibitor 1) (RAI)
           (Placental ribonuclease inhibitor) (RNase inhibitor)
           (RI)
          Length = 461

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 15/77 (19%)
 Frame = +2

Query: 293 QIEKLRLADNGIDQMGRG---------------GNFAPMRCMQLLKTIIANSKDLEDIDL 427
           QI   RL D G+ ++ +G                + +   C  L  T++AN   L ++DL
Sbjct: 347 QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS-LRELDL 405

Query: 428 FGNDIGDLGSRQLLEGL 478
             N +GD G  QL+E +
Sbjct: 406 SNNCLGDAGILQLVESV 422
>sp|Q59801|HYSA_STAAU Hyaluronate lyase precursor (Hyaluronidase) (HYase)
          Length = 807

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
 Frame = +2

Query: 263 FMAPPPPVGPQIEKLRLADNGIDQMGRGGNFAPMRCMQLLKTIIANSKDL--EDIDLF 430
           F AP     P  +K+ L+  G  ++ +GGN   +  ++LL+ II   KD+  + ID F
Sbjct: 213 FTAPIKTFAPDSDKI-LSSVGKAELAKGGNLVDISKVKLLECIIEEDKDMMKKSIDSF 269
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,800,468
Number of Sequences: 369166
Number of extensions: 742132
Number of successful extensions: 1960
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1959
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3931403200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)