Planaria EST Database


DrC_03071

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_03071
         (789 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q13107|UBP4_HUMAN  Ubiquitin carboxyl-terminal hydrolase ...   173   4e-43
sp|P35123|UBP4_MOUSE  Ubiquitin carboxyl-terminal hydrolase ...   169   8e-42
sp|Q8R5H1|UBP15_MOUSE  Ubiquitin carboxyl-terminal hydrolase...   152   1e-36
sp|Q9Y4E8|UBP15_HUMAN  Ubiquitin carboxyl-terminal hydrolase...   152   1e-36
sp|P51784|UBP11_HUMAN  Ubiquitin carboxyl-terminal hydrolase...   150   4e-36
sp|P39538|UBP12_YEAST  Ubiquitin carboxyl-terminal hydrolase...   144   4e-34
sp|Q01988|UBP11_CANFA  Ubiquitin carboxyl-terminal hydrolase...   138   2e-32
sp|Q99K46|UBP11_MOUSE  Ubiquitin carboxyl-terminal hydrolase...   137   3e-32
sp|O60079|UBP12_SCHPO  Probable ubiquitin carboxyl-terminal ...   134   2e-31
sp|O22207|UBP5_ARATH  Ubiquitin carboxyl-terminal hydrolase ...   133   6e-31
>sp|Q13107|UBP4_HUMAN Ubiquitin carboxyl-terminal hydrolase 4 (Ubiquitin thiolesterase 4)
            (Ubiquitin-specific processing protease 4)
            (Deubiquitinating enzyme 4) (Ubiquitous nuclear protein
            homolog)
          Length = 963

 Score =  173 bits (439), Expect = 4e-43
 Identities = 97/258 (37%), Positives = 148/258 (57%), Gaps = 10/258 (3%)
 Frame = +3

Query: 3    SNSSTDSSKIVNGNPF-KNIFSVILSETSSTSTNDHEINPLSRN-RSLKAEADQHIVVEW 176
            ++ S  + K + G P  K +F+  L  +  T+    +IN L+ + + LK  +   + ++W
Sbjct: 687  NDPSETTQKKIKGQPCPKRLFTFSLVNSYGTA----DINSLAADGKLLKLNSRSTLAMDW 742

Query: 177  SSEGMKNYQKNL------KRTSINCTQQIPKLTI--EDCLKQFLCEEYLGQKDLWFCPKC 332
              E  + Y          K  S+   Q+  K T+   DC++ F   E LG+ D W+CP C
Sbjct: 743  DRETRRLYYDEQESEAYEKHVSMLQPQKKKKTTVALRDCIELFTTMETLGEHDPWYCPNC 802

Query: 333  KKDEAASKKLDIWKLPKVLVLHLKRFKATSYFGDKINNEVIFPTKNLNLCQYVPKVENEN 512
            KK + A+KK D+W LPK+LV+HLKRF    Y+ DK++  V FP + LN+ ++V  + +  
Sbjct: 803  KKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVCNL-SAR 861

Query: 513  DFIYDLVAVSNHVGCLAGGHYFAFAKNYLYNRWYKFDDSNTSCVDENEIVTKSAYVLVYV 692
             ++YDL+AVSNH G +  GHY A+AKN L  +WY FDDSN S   E++IVTK+AYVL Y 
Sbjct: 862  PYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQ 921

Query: 693  ARSCNNEYNLPAMMNGHS 746
             R  +  Y  P++ +  S
Sbjct: 922  RRD-DEFYKTPSLSSSGS 938
>sp|P35123|UBP4_MOUSE Ubiquitin carboxyl-terminal hydrolase 4 (Ubiquitin thiolesterase 4)
            (Ubiquitin-specific processing protease 4)
            (Deubiquitinating enzyme 4) (Ubiquitous nuclear protein)
          Length = 962

 Score =  169 bits (428), Expect = 8e-42
 Identities = 92/238 (38%), Positives = 142/238 (59%), Gaps = 10/238 (4%)
 Frame = +3

Query: 15   TDSSKIVNGNP-FKNIFSVILSETSSTSTNDHEINPLSRN-RSLKAEADQHIVVEWSSEG 188
            ++S++ V G P  K +F+  L  +  T+    +IN L+ + + LK  +   + ++W SE 
Sbjct: 690  SESAQKVKGQPRHKRLFTFSLVNSCGTA----DINSLATDGKLLKLNSRSTLAIDWDSET 745

Query: 189  MKNY------QKNLKRTSINCTQQIPK--LTIEDCLKQFLCEEYLGQKDLWFCPKCKKDE 344
               Y      +   K  S++  Q+  K  + + +C++ F   E LG+ D W+CP CKK +
Sbjct: 746  RSLYFDEQESEACEKHLSMSQPQKKKKAAVALRECIELFTTMETLGEHDPWYCPTCKKHQ 805

Query: 345  AASKKLDIWKLPKVLVLHLKRFKATSYFGDKINNEVIFPTKNLNLCQYVPKVENENDFIY 524
             A+KK D+W LPK+LV+HLKRF    Y+ DK++  V FP + LN+ ++V    +   ++Y
Sbjct: 806  QATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPVRALNMSEFVCD-RSARPYVY 864

Query: 525  DLVAVSNHVGCLAGGHYFAFAKNYLYNRWYKFDDSNTSCVDENEIVTKSAYVLVYVAR 698
            DL+AVSNH G +  GHY A+AKN L  +WY FDDS+ S   E++IVTK+AYVL Y  R
Sbjct: 865  DLIAVSNHYGAMGVGHYTAYAKNRLNGKWYYFDDSSVSLASEDQIVTKAAYVLFYQRR 922
>sp|Q8R5H1|UBP15_MOUSE Ubiquitin carboxyl-terminal hydrolase 15 (Ubiquitin thiolesterase 15)
            (Ubiquitin-specific processing protease 15)
            (Deubiquitinating enzyme 15)
          Length = 981

 Score =  152 bits (384), Expect = 1e-36
 Identities = 75/194 (38%), Positives = 115/194 (59%), Gaps = 7/194 (3%)
 Frame = +3

Query: 129  NRSLKAEADQHIVVEWSSEGMKNYQKNLKRTSINCTQQI-------PKLTIEDCLKQFLC 287
            +R L+ +    + ++W  +  K Y            + +       P + ++DC++ F  
Sbjct: 738  DRQLRLDERSFLALDWDPDLKKRYFDENAAEDFEKHESVEYKPPKRPFVKLKDCIELFTT 797

Query: 288  EEYLGQKDLWFCPKCKKDEAASKKLDIWKLPKVLVLHLKRFKATSYFGDKINNEVIFPTK 467
            +E LG +D W+CP CK+ + A+KKLD+W LP VLV+HLKRF  + Y  DK++  V FP  
Sbjct: 798  KEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPIS 857

Query: 468  NLNLCQYVPKVENENDFIYDLVAVSNHVGCLAGGHYFAFAKNYLYNRWYKFDDSNTSCVD 647
            +L++ +++    N     Y+L+AVSNH G + GGHY AFAKN    +WY FDDS+ S   
Sbjct: 858  DLDMSEFLIN-PNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTAS 916

Query: 648  ENEIVTKSAYVLVY 689
            E++IV+K+AYVL Y
Sbjct: 917  EDQIVSKAAYVLFY 930
>sp|Q9Y4E8|UBP15_HUMAN Ubiquitin carboxyl-terminal hydrolase 15 (Ubiquitin thiolesterase 15)
            (Ubiquitin-specific processing protease 15)
            (Deubiquitinating enzyme 15) (Unph-2) (Unph4)
          Length = 981

 Score =  152 bits (384), Expect = 1e-36
 Identities = 75/194 (38%), Positives = 115/194 (59%), Gaps = 7/194 (3%)
 Frame = +3

Query: 129  NRSLKAEADQHIVVEWSSEGMKNYQKNLKRTSINCTQQI-------PKLTIEDCLKQFLC 287
            +R L+ +    + ++W  +  K Y            + +       P + ++DC++ F  
Sbjct: 738  DRQLRLDERSFLALDWDPDLKKRYFDENAAEDFEKHESVEYKPPKKPFVKLKDCIELFTT 797

Query: 288  EEYLGQKDLWFCPKCKKDEAASKKLDIWKLPKVLVLHLKRFKATSYFGDKINNEVIFPTK 467
            +E LG +D W+CP CK+ + A+KKLD+W LP VLV+HLKRF  + Y  DK++  V FP  
Sbjct: 798  KEKLGAEDPWYCPNCKEHQQATKKLDLWSLPPVLVVHLKRFSYSRYMRDKLDTLVDFPIN 857

Query: 468  NLNLCQYVPKVENENDFIYDLVAVSNHVGCLAGGHYFAFAKNYLYNRWYKFDDSNTSCVD 647
            +L++ +++    N     Y+L+AVSNH G + GGHY AFAKN    +WY FDDS+ S   
Sbjct: 858  DLDMSEFLIN-PNAGPCRYNLIAVSNHYGGMGGGHYTAFAKNKDDGKWYYFDDSSVSTAS 916

Query: 648  ENEIVTKSAYVLVY 689
            E++IV+K+AYVL Y
Sbjct: 917  EDQIVSKAAYVLFY 930
>sp|P51784|UBP11_HUMAN Ubiquitin carboxyl-terminal hydrolase 11 (Ubiquitin thiolesterase 11)
            (Ubiquitin-specific processing protease 11)
            (Deubiquitinating enzyme 11)
          Length = 920

 Score =  150 bits (379), Expect = 4e-36
 Identities = 80/239 (33%), Positives = 137/239 (57%), Gaps = 9/239 (3%)
 Frame = +3

Query: 51   KNIFSVILSETSSTSTNDHEINPLSRNRSLKAEADQHIVVEWSSEGMKNYQKNLKRTSI- 227
            K +F+  L   +S  T+D   +P       +  A  +I ++W  E  K Y   ++     
Sbjct: 671  KQLFT--LQTVNSNGTSDRTTSPE------EVHAQPYIAIDWEPEMKKRYYDEVEAEGYV 722

Query: 228  --NCTQQIPK---LTIEDCLKQFLCEEYLGQKDLWFCPKCKKDEAASKKLDIWKLPKVLV 392
              +C   + K   + +++C++ F   E L +++ W+CP CK+ + A+KKLD+W LP++L+
Sbjct: 723  KHDCVGYVMKKAPVRLQECIELFTTVETLEKENPWYCPSCKQHQLATKKLDLWMLPEILI 782

Query: 393  LHLKRFKATSYFGDKINNEVIFPTKNLNLCQYVPKVENEND---FIYDLVAVSNHVGCLA 563
            +HLKRF  T +  +K++  V FP ++L+  ++V + +NE++   + YDL+AVSNH G + 
Sbjct: 783  IHLKRFSYTKFSREKLDTLVEFPIRDLDFSEFVIQPQNESNPELYKYDLIAVSNHYGGMR 842

Query: 564  GGHYFAFAKNYLYNRWYKFDDSNTSCVDENEIVTKSAYVLVYVARSCNNEYNLPAMMNG 740
             GHY  FA N    +W+ FDD++ S V+EN+I +K+AYVL Y  +        PA  +G
Sbjct: 843  DGHYTTFACNKDSGQWHYFDDNSVSPVNENQIESKAAYVLFYQRQDVARRLLSPAGSSG 901
>sp|P39538|UBP12_YEAST Ubiquitin carboxyl-terminal hydrolase 12 (Ubiquitin thiolesterase 12)
            (Ubiquitin-specific processing protease 12)
            (Deubiquitinating enzyme 12)
          Length = 1254

 Score =  144 bits (362), Expect = 4e-34
 Identities = 65/149 (43%), Positives = 93/149 (62%)
 Frame = +3

Query: 252  LTIEDCLKQFLCEEYLGQKDLWFCPKCKKDEAASKKLDIWKLPKVLVLHLKRFKATSYFG 431
            +T++DCL+ F   E LG  D W+CP CK+   A+K++ +W  P +L++HLKRF++   F 
Sbjct: 962  ITLDDCLQLFSKPEILGLTDSWYCPTCKEHRQATKQIQLWNTPDILLIHLKRFESQRSFS 1021

Query: 432  DKINNEVIFPTKNLNLCQYVPKVENENDFIYDLVAVSNHVGCLAGGHYFAFAKNYLYNRW 611
            DKI+  V FP  +L+L +YV   ++    IYDL AV NH G L GGHY A+ KN+  N+W
Sbjct: 1022 DKIDATVNFPITDLDLSRYVVYKDDPRGLIYDLYAVDNHYGGLGGGHYTAYVKNFADNKW 1081

Query: 612  YKFDDSNTSCVDENEIVTKSAYVLVYVAR 698
            Y FDDS  +       +  SAY+L Y+ R
Sbjct: 1082 YYFDDSRVTETAPENSIAGSAYLLFYIRR 1110
>sp|Q01988|UBP11_CANFA Ubiquitin carboxyl-terminal hydrolase 11 (Ubiquitin thiolesterase
           11) (Ubiquitin-specific processing protease 11)
           (Deubiquitinating enzyme 11)
          Length = 445

 Score =  138 bits (348), Expect = 2e-32
 Identities = 72/189 (38%), Positives = 114/189 (60%), Gaps = 9/189 (4%)
 Frame = +3

Query: 150 ADQHIVVEWSSEGMKNYQKNLKRTSI---NCTQQIPK---LTIEDCLKQFLCEEYLGQKD 311
           A  +I ++W  E  K Y   ++       +C   + K   + +++C++ F   E L +++
Sbjct: 221 AQPYIAIDWEPEMKKRYYDEVEAEGYVKHDCVGYVLKKAPVRLQECIELFTTVETLEKEN 280

Query: 312 LWFCPKCKKDEAASKKLDIWKLPKVLVLHLKRFKATSYFGDKINNEVIFPTKNLNLCQYV 491
            WFCP CK+ + A+KKLD+W LP+ L++HLKRF  T +  +K++  V FP ++L+  ++V
Sbjct: 281 PWFCPTCKQHQLATKKLDLWMLPETLIIHLKRFSYTKFSREKLDTLVEFPIRDLDFSEFV 340

Query: 492 PKVENEND---FIYDLVAVSNHVGCLAGGHYFAFAKNYLYNRWYKFDDSNTSCVDENEIV 662
            K +NE+    + YDL+AVSNH G L  GHY  FA N    +   FDD++ S V EN+I 
Sbjct: 341 IKPQNESAPELYKYDLIAVSNHYGGLRDGHYTTFACNKDSGQSDYFDDNSVSPVTENQIE 400

Query: 663 TKSAYVLVY 689
           +K+AYVL Y
Sbjct: 401 SKAAYVLFY 409
>sp|Q99K46|UBP11_MOUSE Ubiquitin carboxyl-terminal hydrolase 11 (Ubiquitin thiolesterase 11)
            (Ubiquitin-specific processing protease 11)
            (Deubiquitinating enzyme 11)
          Length = 797

 Score =  137 bits (346), Expect = 3e-32
 Identities = 74/222 (33%), Positives = 128/222 (57%), Gaps = 9/222 (4%)
 Frame = +3

Query: 51   KNIFSVILSETSSTSTNDHEINPLSRNRSLKAEADQHIVVEWSSEGMKNYQKNLKRTSI- 227
            K +F+  L   +S  T+D   +P       + +   +I ++W  +  + Y   ++     
Sbjct: 549  KQLFT--LQTVNSNGTSDRTTSPE------EMQTQPYIAMDWEPDMKRRYYDEVEAEGYV 600

Query: 228  --NCTQQIPK---LTIEDCLKQFLCEEYLGQKDLWFCPKCKKDEAASKKLDIWKLPKVLV 392
              +C   + K   + +++C+K F   E L +++ W+C  CK+ + A+KKLD+W LP+VL+
Sbjct: 601  KHDCVGYMLKKSPVQLKECIKLFTTVETLEKENPWYCSSCKQHQLATKKLDLWMLPEVLI 660

Query: 393  LHLKRFKATSYFGDKINNEVIFPTKNLNLCQYVPKVENEND---FIYDLVAVSNHVGCLA 563
            +HLKRF  +    +K++  V FP ++L+  ++V K +NE+    + YDL+AVSNH G + 
Sbjct: 661  IHLKRFSFSKISREKLDTLVQFPIRDLDFSEFVIKPKNESSPDLYKYDLIAVSNHYGGMR 720

Query: 564  GGHYFAFAKNYLYNRWYKFDDSNTSCVDENEIVTKSAYVLVY 689
             GHY  FA N    +W+  DD++ S V+EN+I +K+AYVL Y
Sbjct: 721  DGHYTTFACNKDSGQWHYLDDNSVSPVNENQIESKAAYVLFY 762
>sp|O60079|UBP12_SCHPO Probable ubiquitin carboxyl-terminal hydrolase 12 (Ubiquitin
            thiolesterase 12) (Ubiquitin-specific processing protease
            12) (Deubiquitinating enzyme 12)
          Length = 979

 Score =  134 bits (338), Expect = 2e-31
 Identities = 69/150 (46%), Positives = 94/150 (62%), Gaps = 4/150 (2%)
 Frame = +3

Query: 252  LTIEDCLKQFLCEEYLGQKDLWFCPKCKKDEAASKKLDIWKLPKVLVLHLKRFKATSYFG 431
            +T+ DCL +F   E LG++D W+CP CK+   ASK+++IW+ P++L+ HLKRF +   F 
Sbjct: 825  ITLNDCLDEFEKTEQLGEEDPWYCPTCKEFRQASKQMEIWRCPEILIFHLKRFSSERRFR 884

Query: 432  DKINNEVIFPTKNLNLCQYVPKV---ENEN-DFIYDLVAVSNHVGCLAGGHYFAFAKNYL 599
            DKI++ V FP  NL++          E EN   IY+L AV NH G L GGHY AFAKN  
Sbjct: 885  DKIDDLVEFPIDNLDMSMRTGSYKLSEKENPKLIYELYAVDNHYGGLGGGHYTAFAKNPD 944

Query: 600  YNRWYKFDDSNTSCVDENEIVTKSAYVLVY 689
              ++Y FDDS  + V   E VT +AY+L Y
Sbjct: 945  NGQFYCFDDSRVTPVCPEETVTSAAYLLFY 974
>sp|O22207|UBP5_ARATH Ubiquitin carboxyl-terminal hydrolase 5 (Ubiquitin thiolesterase 5)
            (Ubiquitin-specific processing protease 5)
            (Deubiquitinating enzyme 5) (AtUBP5)
          Length = 924

 Score =  133 bits (334), Expect = 6e-31
 Identities = 73/203 (35%), Positives = 111/203 (54%), Gaps = 15/203 (7%)
 Frame = +3

Query: 138  LKAEADQHIVVEWSSEGMKNYQKNLKRTSINCTQQIPK---------------LTIEDCL 272
            L + A   I ++W+ E    Y        I C + +P+               L++  CL
Sbjct: 722  LPSSATVTIYLDWTPELSGMYD-------ITCLESLPEVLKYGPTTKKARSEPLSLYACL 774

Query: 273  KQFLCEEYLGQKDLWFCPKCKKDEAASKKLDIWKLPKVLVLHLKRFKATSYFGDKINNEV 452
            + FL EE L   ++WFCP+C +   ASKKLD+W+LP+VLV+HLKRF  +     K+   V
Sbjct: 775  EAFLREEPLVPDEMWFCPQCNERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFV 834

Query: 453  IFPTKNLNLCQYVPKVENENDFIYDLVAVSNHVGCLAGGHYFAFAKNYLYNRWYKFDDSN 632
             FP  +L+L +YV         +Y+L A++NH G +  GHY A  K    +RWY FDDS+
Sbjct: 835  NFPIHDLDLTKYVANKNLSQPQLYELYALTNHYGGMGSGHYTAHIKLLDDSRWYNFDDSH 894

Query: 633  TSCVDENEIVTKSAYVLVYVARS 701
             S ++E+++ + +AYVL Y  +S
Sbjct: 895  ISHINEDDVKSGAAYVLFYRRKS 917
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,449,825
Number of Sequences: 369166
Number of extensions: 1913121
Number of successful extensions: 5310
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5236
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 7454154400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)