Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_03070
(533 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9V6L9|FBSP1_DROME F-box/SPRY-domain protein 1 59 6e-09
sp|Q8K3B1|FBSP1_MOUSE F-box/SPRY-domain protein 1 (F-box on... 59 1e-08
sp|Q18223|FBSP1_CAEEL F-box/SPRY-domain protein 1 (F-box sy... 49 6e-06
sp|Q9VNV3|DDX1_DROME ATP-dependent helicase DDX1 (DEAD-box ... 33 0.57
sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lys... 32 1.3
sp|Q5HU47|MURC_CAMJR UDP-N-acetylmuramate--L-alanine ligase... 30 4.8
sp|Q9PNN7|MURC_CAMJE UDP-N-acetylmuramate--L-alanine ligase... 30 4.8
>sp|Q9V6L9|FBSP1_DROME F-box/SPRY-domain protein 1
Length = 255
Score = 59.3 bits (142), Expect = 6e-09
Identities = 28/64 (43%), Positives = 42/64 (65%)
Frame = +2
Query: 50 NGGSNMEVQESIFVLLDMEEGNLSFINDGQYLGVAFNGLKGRTLYPAISAVWGHCEVTMA 229
N +V E I V+LD E+ LSF + ++LGVAF GL + LYP +SAV+G+ EV+M
Sbjct: 188 NNAPKYQVGERIRVILDCEDNTLSFEKNYEFLGVAFRGLPDKKLYPTVSAVYGNTEVSMV 247
Query: 230 HVAS 241
++ +
Sbjct: 248 YLGT 251
>sp|Q8K3B1|FBSP1_MOUSE F-box/SPRY-domain protein 1 (F-box only protein 45)
Length = 286
Score = 58.5 bits (140), Expect = 1e-08
Identities = 28/62 (45%), Positives = 41/62 (66%)
Frame = +2
Query: 50 NGGSNMEVQESIFVLLDMEEGNLSFINDGQYLGVAFNGLKGRTLYPAISAVWGHCEVTMA 229
N ++ E I V+LDME+ L+F ++LGVAF GL LYPA+SAV+G+ EVT+
Sbjct: 219 NNAPKYQIGERIRVILDMEDKTLAFERGYEFLGVAFRGLPKACLYPAVSAVYGNTEVTLV 278
Query: 230 HV 235
++
Sbjct: 279 YL 280
>sp|Q18223|FBSP1_CAEEL F-box/SPRY-domain protein 1 (F-box synaptic protein 1)
Length = 332
Score = 49.3 bits (116), Expect = 6e-06
Identities = 24/64 (37%), Positives = 38/64 (59%)
Frame = +2
Query: 50 NGGSNMEVQESIFVLLDMEEGNLSFINDGQYLGVAFNGLKGRTLYPAISAVWGHCEVTMA 229
N EV + I +++D + F + ++LG+AFN + LYPA+ AV+G+ EVTM
Sbjct: 265 NNPPKYEVGDKIRLIIDCDTHVAYFERNSEFLGIAFNHIPPLRLYPAVCAVYGNTEVTMV 324
Query: 230 HVAS 241
+V S
Sbjct: 325 YVGS 328
>sp|Q9VNV3|DDX1_DROME ATP-dependent helicase DDX1 (DEAD-box protein 1)
Length = 727
Score = 32.7 bits (73), Expect = 0.57
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +2
Query: 92 LLDMEEGNLSFINDGQYLGVAF---NGLKGRTLYPAI 193
LLD++ +SF +GQ LGVAF + L T YPA+
Sbjct: 194 LLDLKNQEVSFTKNGQNLGVAFRLPDNLAKETFYPAV 230
>sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lysis A (Tyrosine-protein kinase
1)
Length = 1584
Score = 31.6 bits (70), Expect = 1.3
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Frame = +2
Query: 113 NLSFINDGQYLGVAFNGLKGRTLYPAIS---AVWGHCEVT 223
++ F +G YLGVAF+ + LYP+IS V G C T
Sbjct: 832 DIFFTKNGHYLGVAFSRVTSDPLYPSISFRGVVGGLCVAT 871
>sp|Q5HU47|MURC_CAMJR UDP-N-acetylmuramate--L-alanine ligase
(UDP-N-acetylmuramoyl-L-alanine synthetase)
Length = 431
Score = 29.6 bits (65), Expect = 4.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 56 GSNMEVQESIFVLLDMEEGNLSFINDGQYLGVAFN 160
GSNM +ES ++ + +E + SF+N YL + N
Sbjct: 138 GSNMIYKESQNLVFEADESDSSFLNSNPYLAIVTN 172
>sp|Q9PNN7|MURC_CAMJE UDP-N-acetylmuramate--L-alanine ligase
(UDP-N-acetylmuramoyl-L-alanine synthetase)
Length = 432
Score = 29.6 bits (65), Expect = 4.8
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 56 GSNMEVQESIFVLLDMEEGNLSFINDGQYLGVAFN 160
GSNM +ES ++ + +E + SF+N YL + N
Sbjct: 139 GSNMIYKESQNLVFEADESDSSFLNSNPYLAIVTN 173
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,148,796
Number of Sequences: 369166
Number of extensions: 1073386
Number of successful extensions: 2517
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2516
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3650218350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)