Planaria EST Database


DrC_03067

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_03067
         (921 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8HYN7|KCIP4_MACFA  Kv channel-interacting protein 4 (KCh...    75   3e-13
sp|Q6PHZ8|KCIP4_MOUSE  Kv channel-interacting protein 4 (KCh...    75   3e-13
sp|Q9JJ57|KCIP1_MOUSE  Kv channel-interacting protein 1 (KCh...    70   6e-12
sp|Q9NZI2|KCIP1_HUMAN  Kv channel-interacting protein 1 (KCh...    70   6e-12
sp|Q8R426|KCIP1_RAT  Kv channel-interacting protein 1 (KChIP...    70   6e-12
sp|Q9NS61|KCIP2_HUMAN  Kv channel-interacting protein 2 (KCh...    68   4e-11
sp|Q9JJ69|KCIP2_MOUSE  Kv channel-interacting protein 2 (KCh...    68   4e-11
sp|Q8WN03|KCIP2_MUSPF  Kv channel-interacting protein 2 (KCh...    67   5e-11
sp|P37236|FREQ_DROME  Frequenin-1 (d-FRQ)                          67   7e-11
sp|Q9Y2W7|CSEN_HUMAN  Calsenilin (DRE-antagonist modulator) ...    67   9e-11
>sp|Q8HYN7|KCIP4_MACFA Kv channel-interacting protein 4 (KChIP4) (A-type potassium channel
           modulatory protein 4) (Potassium channel-interacting
           protein 4)
 sp|Q6PIL6|KCIP4_HUMAN Kv channel-interacting protein 4 (KChIP4) (A-type potassium channel
           modulatory protein 4) (Potassium channel-interacting
           protein 4) (Calsenilin-like protein)
          Length = 250

 Score = 74.7 bits (182), Expect = 3e-13
 Identities = 34/87 (39%), Positives = 55/87 (63%)
 Frame = +1

Query: 286 FKVFVYQFNLLLGKGSTARFARLLYGSIKNKNETVMKFEDFLRTIDILANGDVLEKLNWT 465
           FK    QF     +G +  +A  L+ +    +   + FEDF++ + IL  G V EKLNW 
Sbjct: 108 FKEIYSQF---FPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTVQEKLNWA 164

Query: 466 FDLYDIDKDGIISKEDLIEVMSAIFNI 546
           F+LYDI+KDG I+KE+++++M AI+++
Sbjct: 165 FNLYDINKDGYITKEEMLDIMKAIYDM 191
>sp|Q6PHZ8|KCIP4_MOUSE Kv channel-interacting protein 4 (KChIP4) (A-type potassium channel
           modulatory protein 4) (Potassium channel-interacting
           protein 4) (Calsenilin-like protein)
 sp|Q99MG9|KCIP4_RAT Kv channel-interacting protein 4 (KChIP4) (A-type potassium channel
           modulatory protein 4) (Potassium channel-interacting
           protein 4)
          Length = 250

 Score = 74.7 bits (182), Expect = 3e-13
 Identities = 34/87 (39%), Positives = 55/87 (63%)
 Frame = +1

Query: 286 FKVFVYQFNLLLGKGSTARFARLLYGSIKNKNETVMKFEDFLRTIDILANGDVLEKLNWT 465
           FK    QF     +G +  +A  L+ +    +   + FEDF++ + IL  G V EKLNW 
Sbjct: 108 FKEIYSQF---FPQGDSTTYAHFLFNAFDTDHNGAVSFEDFIKGLSILLRGTVQEKLNWA 164

Query: 466 FDLYDIDKDGIISKEDLIEVMSAIFNI 546
           F+LYDI+KDG I+KE+++++M AI+++
Sbjct: 165 FNLYDINKDGYITKEEMLDIMKAIYDM 191
>sp|Q9JJ57|KCIP1_MOUSE Kv channel-interacting protein 1 (KChIP1) (A-type potassium channel
           modulatory protein 1) (Potassium channel-interacting
           protein 1)
          Length = 227

 Score = 70.5 bits (171), Expect = 6e-12
 Identities = 30/73 (41%), Positives = 49/73 (67%)
 Frame = +1

Query: 328 GSTARFARLLYGSIKNKNETVMKFEDFLRTIDILANGDVLEKLNWTFDLYDIDKDGIISK 507
           G  + +A  L+ +        +KFEDF+  + IL  G V EKL WTF+LYDI+KDG I+K
Sbjct: 96  GDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINK 155

Query: 508 EDLIEVMSAIFNI 546
           E++++++ AI+++
Sbjct: 156 EEMMDIVKAIYDM 168
>sp|Q9NZI2|KCIP1_HUMAN Kv channel-interacting protein 1 (KChIP1) (A-type potassium channel
           modulatory protein 1) (Potassium channel-interacting
           protein 1) (Vesicle APC-binding protein)
          Length = 227

 Score = 70.5 bits (171), Expect = 6e-12
 Identities = 30/73 (41%), Positives = 49/73 (67%)
 Frame = +1

Query: 328 GSTARFARLLYGSIKNKNETVMKFEDFLRTIDILANGDVLEKLNWTFDLYDIDKDGIISK 507
           G  + +A  L+ +        +KFEDF+  + IL  G V EKL WTF+LYDI+KDG I+K
Sbjct: 96  GDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINK 155

Query: 508 EDLIEVMSAIFNI 546
           E++++++ AI+++
Sbjct: 156 EEMMDIVKAIYDM 168
>sp|Q8R426|KCIP1_RAT Kv channel-interacting protein 1 (KChIP1) (A-type potassium channel
           modulatory protein 1) (Potassium channel-interacting
           protein 1)
          Length = 227

 Score = 70.5 bits (171), Expect = 6e-12
 Identities = 30/73 (41%), Positives = 49/73 (67%)
 Frame = +1

Query: 328 GSTARFARLLYGSIKNKNETVMKFEDFLRTIDILANGDVLEKLNWTFDLYDIDKDGIISK 507
           G  + +A  L+ +        +KFEDF+  + IL  G V EKL WTF+LYDI+KDG I+K
Sbjct: 96  GDASTYAHYLFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINK 155

Query: 508 EDLIEVMSAIFNI 546
           E++++++ AI+++
Sbjct: 156 EEMMDIVKAIYDM 168
>sp|Q9NS61|KCIP2_HUMAN Kv channel-interacting protein 2 (KChIP2) (A-type potassium channel
           modulatory protein 2) (Potassium channel-interacting
           protein 2) (Cardiac voltage gated potassium channel
           modulatory subunit)
          Length = 270

 Score = 67.8 bits (164), Expect = 4e-11
 Identities = 32/121 (26%), Positives = 67/121 (55%)
 Frame = +1

Query: 286 FKVFVYQFNLLLGKGSTARFARLLYGSIKNKNETVMKFEDFLRTIDILANGDVLEKLNWT 465
           FK    QF     +G ++ +A  L+ +    ++  + FEDF+  + ++  G V ++LNW 
Sbjct: 128 FKQIYSQF---FPQGDSSTYATFLFNAFDTNHDGSVSFEDFVAGLSVILRGTVDDRLNWA 184

Query: 466 FDLYDIDKDGIISKEDLIEVMSAIFNISNDIFCVDTSKNVWVDYSISLMSKIDKLPSALM 645
           F+LYD++KDG I+KE+++++M +I+++          +    ++  S   K+D+    ++
Sbjct: 185 FNLYDLNKDGCITKEEMLDIMKSIYDMMGKYTYPALREEApreHVESFFQKMDRNKDGVV 244

Query: 646 T 648
           T
Sbjct: 245 T 245
>sp|Q9JJ69|KCIP2_MOUSE Kv channel-interacting protein 2 (KChIP2) (A-type potassium channel
           modulatory protein 2) (Potassium channel-interacting
           protein 2)
          Length = 270

 Score = 67.8 bits (164), Expect = 4e-11
 Identities = 31/121 (25%), Positives = 67/121 (55%)
 Frame = +1

Query: 286 FKVFVYQFNLLLGKGSTARFARLLYGSIKNKNETVMKFEDFLRTIDILANGDVLEKLNWT 465
           FK    QF     +G ++ +A  L+ +    ++  + FEDF+  + ++  G + ++LNW 
Sbjct: 128 FKQIYSQF---FPQGDSSNYATFLFNAFDTNHDGSVSFEDFVAGLSVILRGTIDDRLNWA 184

Query: 466 FDLYDIDKDGIISKEDLIEVMSAIFNISNDIFCVDTSKNVWVDYSISLMSKIDKLPSALM 645
           F+LYD++KDG I+KE+++++M +I+++          +    ++  S   K+D+    ++
Sbjct: 185 FNLYDLNKDGCITKEEMLDIMKSIYDMMGKYTYPALREEApreHVESFFQKMDRNKDGVV 244

Query: 646 T 648
           T
Sbjct: 245 T 245
>sp|Q8WN03|KCIP2_MUSPF Kv channel-interacting protein 2 (KChIP2) (A-type potassium channel
           modulatory protein 2) (Potassium channel-interacting
           protein 2)
          Length = 270

 Score = 67.4 bits (163), Expect = 5e-11
 Identities = 31/121 (25%), Positives = 67/121 (55%)
 Frame = +1

Query: 286 FKVFVYQFNLLLGKGSTARFARLLYGSIKNKNETVMKFEDFLRTIDILANGDVLEKLNWT 465
           FK    QF     +G ++ +A  L+ +    ++  + FEDF+  + ++  G + ++LNW 
Sbjct: 128 FKQIYSQF---FPQGDSSTYATFLFNAFDTNHDGSVSFEDFVAGLSVILRGTIDDRLNWA 184

Query: 466 FDLYDIDKDGIISKEDLIEVMSAIFNISNDIFCVDTSKNVWVDYSISLMSKIDKLPSALM 645
           F+LYD++KDG I+KE+++++M +I+++          +    ++  S   K+D+    ++
Sbjct: 185 FNLYDLNKDGCITKEEMLDIMKSIYDMMGKYTYPALREEApreHVESFFQKMDRNKDGVV 244

Query: 646 T 648
           T
Sbjct: 245 T 245
>sp|P37236|FREQ_DROME Frequenin-1 (d-FRQ)
          Length = 187

 Score = 67.0 bits (162), Expect = 7e-11
 Identities = 26/84 (30%), Positives = 52/84 (61%)
 Frame = +1

Query: 295 FVYQFNLLLGKGSTARFARLLYGSIKNKNETVMKFEDFLRTIDILANGDVLEKLNWTFDL 474
           F+  +     +G  ++FA L++      N+  ++FE+F+R + + + G++ EKL W F L
Sbjct: 48  FIKIYKQFFPQGDPSKFASLVFRVFDENNDGSIEFEEFIRALSVTSKGNLDEKLQWAFRL 107

Query: 475 YDIDKDGIISKEDLIEVMSAIFNI 546
           YD+D DG I++E++  ++ AI+ +
Sbjct: 108 YDVDNDGYITREEMYNIVDAIYQM 131
>sp|Q9Y2W7|CSEN_HUMAN Calsenilin (DRE-antagonist modulator) (DREAM) (Kv
           channel-interacting protein 3) (KChIP3) (A-type
           potassium channel modulatory protein 3)
          Length = 256

 Score = 66.6 bits (161), Expect = 9e-11
 Identities = 32/87 (36%), Positives = 51/87 (58%)
 Frame = +1

Query: 286 FKVFVYQFNLLLGKGSTARFARLLYGSIKNKNETVMKFEDFLRTIDILANGDVLEKLNWT 465
           FK+   QF     +G    +A  L+ +        + FEDF+  + IL  G V EKL W 
Sbjct: 114 FKLIYAQF---FPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWA 170

Query: 466 FDLYDIDKDGIISKEDLIEVMSAIFNI 546
           F+LYDI+KDG I+KE+++ +M +I+++
Sbjct: 171 FNLYDINKDGYITKEEMLAIMKSIYDM 197
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,040,870
Number of Sequences: 369166
Number of extensions: 1804890
Number of successful extensions: 4804
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4795
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9414689480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)