Planaria EST Database


DrC_03066

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_03066
         (478 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8TEY7|UBP33_HUMAN  Ubiquitin carboxyl-terminal hydrolase...   113   2e-25
sp|Q9Y2K6|UBP20_HUMAN  Ubiquitin carboxyl-terminal hydrolase...   106   2e-23
sp|P51784|UBP11_HUMAN  Ubiquitin carboxyl-terminal hydrolase...    67   2e-11
sp|O75604|UBP2_HUMAN  Ubiquitin carboxyl-terminal hydrolase ...    66   5e-11
sp|Q01988|UBP11_CANFA  Ubiquitin carboxyl-terminal hydrolase...    64   1e-10
sp|Q9UPT9|UBP22_HUMAN  Ubiquitin carboxyl-terminal hydrolase...    64   2e-10
sp|O57429|UBP2_CHICK  Ubiquitin carboxyl-terminal hydrolase ...    64   2e-10
sp|Q5DU02|UBP22_MOUSE  Ubiquitin carboxyl-terminal hydrolase...    63   3e-10
sp|P40818|UBP8_HUMAN  Ubiquitin carboxyl-terminal hydrolase ...    63   3e-10
sp|Q80U87|UBP8_MOUSE  Ubiquitin carboxyl-terminal hydrolase ...    63   3e-10
>sp|Q8TEY7|UBP33_HUMAN Ubiquitin carboxyl-terminal hydrolase 33 (Ubiquitin thiolesterase
           33) (Ubiquitin-specific processing protease 33)
           (Deubiquitinating enzyme 33) (VHL-interacting
           deubiquitinating enzyme 1)
          Length = 942

 Score =  113 bits (283), Expect = 2e-25
 Identities = 60/129 (46%), Positives = 77/129 (59%), Gaps = 9/129 (6%)
 Frame = +1

Query: 109 SHPLPPTSNTAISLLYYQLSWILTFLIWIK--------NWFINRVVTLEQCLELFFSQDE 264
           SHP       +    Y    WI  F+ ++K        +WF   VVTL+ CL  FF++DE
Sbjct: 522 SHPTSIVKAGSCGEAYAPQGWIAFFMEYVKRFVVSCVPSWFWGPVVTLQDCLAAFFARDE 581

Query: 265 LKGDNKYSCDKCQGHQNAVMQSKLLKSPEILCFHLKRFRHDFGCS-KITTAVRFPVEGLD 441
           LKGDN YSC+KC+  +N V   K+   PEILC HLKRFRH+   S KI+T V FP+EGLD
Sbjct: 582 LKGDNMYSCEKCKKLRNGVKFCKVQNFPEILCIHLKRFRHELMFSTKISTHVSFPLEGLD 641

Query: 442 MSPFLHPDN 468
           + PFL  D+
Sbjct: 642 LQPFLAKDS 650
>sp|Q9Y2K6|UBP20_HUMAN Ubiquitin carboxyl-terminal hydrolase 20 (Ubiquitin thiolesterase
           20) (Ubiquitin-specific processing protease 20)
           (Deubiquitinating enzyme 20)
          Length = 913

 Score =  106 bits (265), Expect = 2e-23
 Identities = 56/111 (50%), Positives = 73/111 (65%), Gaps = 2/111 (1%)
 Frame = +1

Query: 130 SNTAISLLYYQLSWILTFLI-WIKNWFINRVVTLEQCLELFFSQDELKGDNKYSCDKCQG 306
           S  A   L + + +I  F++    +WF   VVTLE CL  FF+ DELKGDN YSC++C+ 
Sbjct: 505 SYAAQGWLAFIVEYIRRFVVSCTPSWFWGPVVTLEDCLAAFFAADELKGDNMYSCERCKK 564

Query: 307 HQNAVMQSKLLKSPEILCFHLKRFRHDFGCS-KITTAVRFPVEGLDMSPFL 456
            +N V   K+L+ PEILC HLKRFRH+   S KI + V FP+EGLD+ PFL
Sbjct: 565 LRNGVKYCKVLRLPEILCIHLKRFRHEVMYSFKINSHVSFPLEGLDLRPFL 615
>sp|P51784|UBP11_HUMAN Ubiquitin carboxyl-terminal hydrolase 11 (Ubiquitin thiolesterase
           11) (Ubiquitin-specific processing protease 11)
           (Deubiquitinating enzyme 11)
          Length = 920

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 35/87 (40%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
 Frame = +1

Query: 220 VTLEQCLELFFSQDELKGDNKYSCDKCQGHQNAVMQSKLLKSPEILCFHLKRFRH-DFGC 396
           V L++C+ELF + + L+ +N + C  C+ HQ A  +  L   PEIL  HLKRF +  F  
Sbjct: 736 VRLQECIELFTTVETLEKENPWYCPSCKQHQLATKKLDLWMLPEILIIHLKRFSYTKFSR 795

Query: 397 SKITTAVRFPVEGLDMSPF-LHPDNKN 474
            K+ T V FP+  LD S F + P N++
Sbjct: 796 EKLDTLVEFPIRDLDFSEFVIQPQNES 822
>sp|O75604|UBP2_HUMAN Ubiquitin carboxyl-terminal hydrolase 2 (Ubiquitin thiolesterase 2)
           (Ubiquitin-specific processing protease 2)
           (Deubiquitinating enzyme 2) (41 kDa ubiquitin-specific
           protease)
          Length = 605

 Score = 65.9 bits (159), Expect = 5e-11
 Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
 Frame = +1

Query: 220 VTLEQCLELFFSQDELKGDNKYSCDKCQGHQNAVMQSKLLKSPEILCFHLKRFRHD-FGC 396
           VTL  C+ LF  +D L GD K +C +C+G +  + +  + + P+IL  HLKRF       
Sbjct: 453 VTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRT 512

Query: 397 SKITTAVRFPVEGLDMSPF 453
           SK+TT V FP+  LD+  F
Sbjct: 513 SKLTTFVNFPLRDLDLREF 531
>sp|Q01988|UBP11_CANFA Ubiquitin carboxyl-terminal hydrolase 11 (Ubiquitin thiolesterase
           11) (Ubiquitin-specific processing protease 11)
           (Deubiquitinating enzyme 11)
          Length = 445

 Score = 64.3 bits (155), Expect = 1e-10
 Identities = 34/87 (39%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
 Frame = +1

Query: 220 VTLEQCLELFFSQDELKGDNKYSCDKCQGHQNAVMQSKLLKSPEILCFHLKRFRH-DFGC 396
           V L++C+ELF + + L+ +N + C  C+ HQ A  +  L   PE L  HLKRF +  F  
Sbjct: 261 VRLQECIELFTTVETLEKENPWFCPTCKQHQLATKKLDLWMLPETLIIHLKRFSYTKFSR 320

Query: 397 SKITTAVRFPVEGLDMSPF-LHPDNKN 474
            K+ T V FP+  LD S F + P N++
Sbjct: 321 EKLDTLVEFPIRDLDFSEFVIKPQNES 347
>sp|Q9UPT9|UBP22_HUMAN Ubiquitin carboxyl-terminal hydrolase 22 (Ubiquitin thiolesterase
           22) (Ubiquitin-specific processing protease 22)
           (Deubiquitinating enzyme 22)
          Length = 525

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 34/84 (40%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
 Frame = +1

Query: 208 INRVVTLEQCLELFFSQDELKGDNKYSCDKCQGHQNAVMQSKLLKSPEILCFHLKRFRHD 387
           ++   TL  CL  F   + L    K  C  C  +Q +  Q  + K P + CFHLKRF H 
Sbjct: 356 VSGTTTLTDCLRRFTRPEHLGSSAKIKCSGCHSYQESTKQLTMKKLPIVACFHLKRFEHS 415

Query: 388 FGC-SKITTAVRFPVEGLDMSPFL 456
                KITT V FP+E LDM+PF+
Sbjct: 416 AKLRRKITTYVSFPLE-LDMTPFM 438
>sp|O57429|UBP2_CHICK Ubiquitin carboxyl-terminal hydrolase 2 (Ubiquitin thiolesterase 2)
           (Ubiquitin-specific processing protease 2)
           (Deubiquitinating enzyme 2) (41 kDa ubiquitin-specific
           protease)
          Length = 357

 Score = 63.5 bits (153), Expect = 2e-10
 Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
 Frame = +1

Query: 220 VTLEQCLELFFSQDELKGDNKYSCDKCQGHQNAVMQSKLLKSPEILCFHLKRFRH-DFGC 396
           VTL  CL LF  +D L GD K +C +C+       +  + K P+IL  HLKRF       
Sbjct: 205 VTLMDCLRLFTKEDVLDGDEKPTCCRCKARTRCTKKFSIQKFPKILVLHLKRFSEARIRA 264

Query: 397 SKITTAVRFPVEGLDMSPF 453
           SK+TT V FP++ LD+  F
Sbjct: 265 SKLTTFVNFPLKDLDLREF 283
>sp|Q5DU02|UBP22_MOUSE Ubiquitin carboxyl-terminal hydrolase 22 (Ubiquitin thiolesterase
           22) (Ubiquitin-specific processing protease 22)
           (Deubiquitinating enzyme 22)
          Length = 525

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 34/79 (43%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
 Frame = +1

Query: 223 TLEQCLELFFSQDELKGDNKYSCDKCQGHQNAVMQSKLLKSPEILCFHLKRFRHDFGC-S 399
           TL  CL  F   + L    K  C  C  +Q +  Q  + K P + CFHLKRF H      
Sbjct: 361 TLTDCLRRFTRPEHLGSSAKIKCSGCHSYQESTKQLTMKKLPIVACFHLKRFEHSAKLRR 420

Query: 400 KITTAVRFPVEGLDMSPFL 456
           KITT V FP+E LDM+PF+
Sbjct: 421 KITTYVSFPLE-LDMTPFM 438
>sp|P40818|UBP8_HUMAN Ubiquitin carboxyl-terminal hydrolase 8 (Ubiquitin thiolesterase 8)
            (Ubiquitin-specific processing protease 8)
            (Deubiquitinating enzyme 8) (hUBPy)
          Length = 1118

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
 Frame = +1

Query: 223  TLEQCLELFFSQDELKGDNKYSCDKCQGHQNAVMQSKLLKSPEILCFHLKRFRHDFGCS- 399
            TL+ CL LF  +++L  +N++ C  C+  ++++ + ++ K P +L  HLKRF +D     
Sbjct: 963  TLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ 1022

Query: 400  KITTAVRFPVEGLDMSPFL 456
            K+ T+V FP+E LD+S ++
Sbjct: 1023 KLQTSVDFPLENLDLSQYV 1041
>sp|Q80U87|UBP8_MOUSE Ubiquitin carboxyl-terminal hydrolase 8 (Ubiquitin thiolesterase 8)
            (Ubiquitin-specific processing protease 8)
            (Deubiquitinating enzyme 8) (mUBPy)
          Length = 1080

 Score = 63.2 bits (152), Expect = 3e-10
 Identities = 28/79 (35%), Positives = 51/79 (64%), Gaps = 1/79 (1%)
 Frame = +1

Query: 223  TLEQCLELFFSQDELKGDNKYSCDKCQGHQNAVMQSKLLKSPEILCFHLKRFRHDFGCS- 399
            TL+ CL LF  +++L  +N++ C  C+  ++++ + ++ K P +L  HLKRF +D     
Sbjct: 925  TLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQ 984

Query: 400  KITTAVRFPVEGLDMSPFL 456
            K+ T+V FP+E LD+S ++
Sbjct: 985  KLQTSVDFPLENLDLSQYV 1003
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,596,794
Number of Sequences: 369166
Number of extensions: 949663
Number of successful extensions: 2516
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2502
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2832714465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)