Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_03059
(758 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9Z1N5|UAP56_MOUSE Spliceosome RNA helicase Bat1 (DEAD-b... 374 e-103
sp|Q13838|UAP56_HUMAN Spliceosome RNA helicase BAT1 (DEAD-b... 374 e-103
sp|Q5WR10|UAP56_CANFA Spliceosome RNA helicase BAT1 (DEAD-b... 374 e-103
sp|Q5U216|DDX39_RAT ATP-dependent helicase DDX39 (DEAD-box ... 372 e-103
sp|Q5ZHZ0|UAP56_CHICK Spliceosome RNA helicase BAT1 (DEAD-b... 372 e-103
sp|Q8VDW0|DDX39_MOUSE ATP-dependent helicase DDX39 (DEAD-bo... 372 e-103
sp|O00148|DDX39_HUMAN ATP-dependent helicase DDX39 (DEAD-bo... 371 e-102
sp|Q27268|UAP56_DROME ATP-dependent RNA helicase WM6 (DEAD-... 362 e-100
sp|Q18212|UAP56_CAEEL Spliceosome RNA helicase BAT1 homolog... 345 1e-94
sp|O13792|UAP56_SCHPO ATP-dependent RNA helicase uap56 330 3e-90
>sp|Q9Z1N5|UAP56_MOUSE Spliceosome RNA helicase Bat1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (HLA-B associated transcript
1)
sp|Q63413|UAP56_RAT Spliceosome RNA helicase Bat1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (ATP-dependent RNA helicase
p47)
Length = 428
Score = 374 bits (960), Expect = e-103
Identities = 181/258 (70%), Positives = 219/258 (84%), Gaps = 6/258 (2%)
Frame = +1
Query: 1 EDEQVVITAN------DAKKTVKDSYVSMHSSGFRDFLLKPELLRSIIDCGFEHPSQVQH 162
ED++V A AKK VK SYVS+HSSGFRDFLLKPELLR+I+DCGFEHPS+VQH
Sbjct: 14 EDDEVETAAGADGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQH 73
Query: 163 ECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLDIDESSSRVLVLCHTRELAFQISKEY 342
ECIPQAIL MDVLCQAKSGMGKTAVFVLATLQQL+ VLV+CHTRELAFQISKEY
Sbjct: 74 ECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEY 133
Query: 343 ERFSKYMSSLKVSVFYGGVPIRTDIENIKKSCPQIIVGTPGRLLDLVKQKALSLDNIKHF 522
ERFSKYM ++KV+VF+GG+ I+ D E +KK+CP I+VGTPGR+L L + K+L+L +IKHF
Sbjct: 134 ERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHF 193
Query: 523 IIDECDKVLESVSMRADVQAIFKLTPRSKQVMMFSATLSKEIRPICKKFMTDPLEIFIDN 702
I+DECDK+LE + MR DVQ IF++TP KQVMMFSATLSKEIRP+C+KFM DP+EIF+D+
Sbjct: 194 ILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDD 253
Query: 703 DSKLTLHGLKQHYIKLTE 756
++KLTLHGL+Q+Y+KL +
Sbjct: 254 ETKLTLHGLQQYYVKLKD 271
>sp|Q13838|UAP56_HUMAN Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein) (ATP-dependent RNA helicase
p47) (HLA-B associated transcript-1)
sp|Q29024|UAP56_PIG Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|P60024|UAP56_PANTR Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|Q5TM17|UAP56_MACMU Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
sp|Q5RE47|UAP56_PONPY Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 374 bits (960), Expect = e-103
Identities = 181/258 (70%), Positives = 219/258 (84%), Gaps = 6/258 (2%)
Frame = +1
Query: 1 EDEQVVITAND------AKKTVKDSYVSMHSSGFRDFLLKPELLRSIIDCGFEHPSQVQH 162
ED++V A AKK VK SYVS+HSSGFRDFLLKPELLR+I+DCGFEHPS+VQH
Sbjct: 14 EDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQH 73
Query: 163 ECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLDIDESSSRVLVLCHTRELAFQISKEY 342
ECIPQAIL MDVLCQAKSGMGKTAVFVLATLQQL+ VLV+CHTRELAFQISKEY
Sbjct: 74 ECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEY 133
Query: 343 ERFSKYMSSLKVSVFYGGVPIRTDIENIKKSCPQIIVGTPGRLLDLVKQKALSLDNIKHF 522
ERFSKYM ++KV+VF+GG+ I+ D E +KK+CP I+VGTPGR+L L + K+L+L +IKHF
Sbjct: 134 ERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHF 193
Query: 523 IIDECDKVLESVSMRADVQAIFKLTPRSKQVMMFSATLSKEIRPICKKFMTDPLEIFIDN 702
I+DECDK+LE + MR DVQ IF++TP KQVMMFSATLSKEIRP+C+KFM DP+EIF+D+
Sbjct: 194 ILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDD 253
Query: 703 DSKLTLHGLKQHYIKLTE 756
++KLTLHGL+Q+Y+KL +
Sbjct: 254 ETKLTLHGLQQYYVKLKD 271
>sp|Q5WR10|UAP56_CANFA Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 374 bits (959), Expect = e-103
Identities = 181/257 (70%), Positives = 217/257 (84%), Gaps = 5/257 (1%)
Frame = +1
Query: 1 EDEQVVITAND-----AKKTVKDSYVSMHSSGFRDFLLKPELLRSIIDCGFEHPSQVQHE 165
EDE D AKK VK SYVS+HSSGFRDFLLKPELLR+I+DCGFEHPS+VQHE
Sbjct: 15 EDEVETAAGGDGSEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHE 74
Query: 166 CIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLDIDESSSRVLVLCHTRELAFQISKEYE 345
CIPQAIL MDVLCQAKSGMGKTAVFVLATLQQL+ VLV+CHTRELAFQISKEYE
Sbjct: 75 CIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYE 134
Query: 346 RFSKYMSSLKVSVFYGGVPIRTDIENIKKSCPQIIVGTPGRLLDLVKQKALSLDNIKHFI 525
RFSKYM ++KV+VF+GG+ I+ D E +KK+CP I+VGTPGR+L L + K+L+L +IKHFI
Sbjct: 135 RFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFI 194
Query: 526 IDECDKVLESVSMRADVQAIFKLTPRSKQVMMFSATLSKEIRPICKKFMTDPLEIFIDND 705
+DECDK+LE + MR DVQ IF++TP KQVMMFSATLSKEIRP+C+KFM DP+EIF+D++
Sbjct: 195 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDE 254
Query: 706 SKLTLHGLKQHYIKLTE 756
+KLTLHGL+Q+Y+KL +
Sbjct: 255 TKLTLHGLQQYYVKLKD 271
>sp|Q5U216|DDX39_RAT ATP-dependent helicase DDX39 (DEAD-box protein 39) (Nuclear RNA
helicase, DECD variant of DEAD box family)
Length = 427
Score = 372 bits (956), Expect = e-103
Identities = 177/256 (69%), Positives = 218/256 (85%), Gaps = 4/256 (1%)
Frame = +1
Query: 1 EDEQVVI----TANDAKKTVKDSYVSMHSSGFRDFLLKPELLRSIIDCGFEHPSQVQHEC 168
EDE+ + T KK VK SYVS+HSSGFRDFLLKPELLR+I+DCGFEHPS+VQHEC
Sbjct: 15 EDEEPQVPQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHEC 74
Query: 169 IPQAILSMDVLCQAKSGMGKTAVFVLATLQQLDIDESSSRVLVLCHTRELAFQISKEYER 348
IPQAIL MDVLCQAKSGMGKTAVFVLATLQQ++ VLV+CHTRELAFQISKEYER
Sbjct: 75 IPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPINGQVSVLVMCHTRELAFQISKEYER 134
Query: 349 FSKYMSSLKVSVFYGGVPIRTDIENIKKSCPQIIVGTPGRLLDLVKQKALSLDNIKHFII 528
FSKYM S+KVSVF+GG+ I+ D + +KK+CP ++VGTPGR+L LV+ ++L+L N+KHF++
Sbjct: 135 FSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVL 194
Query: 529 DECDKVLESVSMRADVQAIFKLTPRSKQVMMFSATLSKEIRPICKKFMTDPLEIFIDNDS 708
DECDK+LE + MR DVQ IF+LTP KQ MMFSATLSKEIRP+C+KFM DP+E+F+D+++
Sbjct: 195 DECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDET 254
Query: 709 KLTLHGLKQHYIKLTE 756
KLTLHGL+Q+Y+KL +
Sbjct: 255 KLTLHGLQQYYVKLKD 270
>sp|Q5ZHZ0|UAP56_CHICK Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
U2AF65 associated protein)
Length = 428
Score = 372 bits (956), Expect = e-103
Identities = 176/240 (73%), Positives = 212/240 (88%)
Frame = +1
Query: 37 KKTVKDSYVSMHSSGFRDFLLKPELLRSIIDCGFEHPSQVQHECIPQAILSMDVLCQAKS 216
KK VK SYVS+HSSGFRDFLLKPELLR+I+DCGFEHPS+VQHECIPQAIL MDVLCQAKS
Sbjct: 32 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS 91
Query: 217 GMGKTAVFVLATLQQLDIDESSSRVLVLCHTRELAFQISKEYERFSKYMSSLKVSVFYGG 396
GMGKTAVFVLATLQQL+ VLV+CHTRELAFQISKEYERFSKYM S+KV+VF+GG
Sbjct: 92 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGG 151
Query: 397 VPIRTDIENIKKSCPQIIVGTPGRLLDLVKQKALSLDNIKHFIIDECDKVLESVSMRADV 576
+ ++ D E +KK+CP I+VGTPGR+L L + K+L+L +IKHFI+DECDK+LE + MR DV
Sbjct: 152 LAVKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDV 211
Query: 577 QAIFKLTPRSKQVMMFSATLSKEIRPICKKFMTDPLEIFIDNDSKLTLHGLKQHYIKLTE 756
Q IF++TP KQVMMFSATLSKEIRP+C+KFM DP+EIF+D+++KLTLHGL+Q+Y+KL +
Sbjct: 212 QEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD 271
>sp|Q8VDW0|DDX39_MOUSE ATP-dependent helicase DDX39 (DEAD-box protein 39)
Length = 427
Score = 372 bits (954), Expect = e-103
Identities = 173/240 (72%), Positives = 212/240 (88%)
Frame = +1
Query: 37 KKTVKDSYVSMHSSGFRDFLLKPELLRSIIDCGFEHPSQVQHECIPQAILSMDVLCQAKS 216
KK VK SYVS+HSSGFRDFLLKPELLR+I+DCGFEHPS+VQHECIPQAIL MDVLCQAKS
Sbjct: 31 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS 90
Query: 217 GMGKTAVFVLATLQQLDIDESSSRVLVLCHTRELAFQISKEYERFSKYMSSLKVSVFYGG 396
GMGKTAVFVLATLQQ++ VLV+CHTRELAFQISKEYERFSKYM S+KVSVF+GG
Sbjct: 91 GMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGG 150
Query: 397 VPIRTDIENIKKSCPQIIVGTPGRLLDLVKQKALSLDNIKHFIIDECDKVLESVSMRADV 576
+ I+ D + +KK+CP ++VGTPGR+L LV+ ++L+L N+KHF++DECDK+LE + MR DV
Sbjct: 151 LSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDV 210
Query: 577 QAIFKLTPRSKQVMMFSATLSKEIRPICKKFMTDPLEIFIDNDSKLTLHGLKQHYIKLTE 756
Q IF+LTP KQ MMFSATLSKEIRP+C+KFM DP+E+F+D+++KLTLHGL+Q+Y+KL +
Sbjct: 211 QEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKD 270
>sp|O00148|DDX39_HUMAN ATP-dependent helicase DDX39 (DEAD-box protein 39) (Nuclear RNA
helicase URH49)
Length = 427
Score = 371 bits (953), Expect = e-102
Identities = 172/240 (71%), Positives = 211/240 (87%)
Frame = +1
Query: 37 KKTVKDSYVSMHSSGFRDFLLKPELLRSIIDCGFEHPSQVQHECIPQAILSMDVLCQAKS 216
KK +K SYVS+HSSGFRDFLLKPELLR+I+DCGFEHPS+VQHECIPQAIL MDVLCQAKS
Sbjct: 31 KKDIKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS 90
Query: 217 GMGKTAVFVLATLQQLDIDESSSRVLVLCHTRELAFQISKEYERFSKYMSSLKVSVFYGG 396
GMGKTAVFVLATLQQ++ VLV+CHTRELAFQISKEYERFSKYM S+KVSVF+GG
Sbjct: 91 GMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGG 150
Query: 397 VPIRTDIENIKKSCPQIIVGTPGRLLDLVKQKALSLDNIKHFIIDECDKVLESVSMRADV 576
+ I+ D E +KK+CP ++VGTPGR+L LV+ ++ SL N+KHF++DECDK+LE + MR DV
Sbjct: 151 LSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDV 210
Query: 577 QAIFKLTPRSKQVMMFSATLSKEIRPICKKFMTDPLEIFIDNDSKLTLHGLKQHYIKLTE 756
Q IF+LTP KQ MMFSATLSK+IRP+C+KFM DP+E+F+D+++KLTLHGL+Q+Y+KL +
Sbjct: 211 QEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKD 270
>sp|Q27268|UAP56_DROME ATP-dependent RNA helicase WM6 (DEAD-box protein UAP56) (HEL/UAP56)
Length = 424
Score = 362 bits (929), Expect = e-100
Identities = 172/257 (66%), Positives = 216/257 (84%), Gaps = 5/257 (1%)
Frame = +1
Query: 1 EDEQVVITAND----AKKTVKDSYVSMHSSGFRDFLLKPELLRSIIDCGFEHPSQVQHEC 168
++EQ TA + KK VK +YVS+HSSGFRDFLLKPE+LR+I+DCGFEHPS+VQHEC
Sbjct: 12 DEEQTETTAVENQEAPKKDVKGTYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHEC 71
Query: 169 IPQAILSMDVLCQAKSGMGKTAVFVLATLQQLD-IDESSSRVLVLCHTRELAFQISKEYE 345
IPQA+L MD+LCQAKSGMGKTAVFVLATLQQL+ D ++ VLV+CHTRELAFQISKEYE
Sbjct: 72 IPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYE 131
Query: 346 RFSKYMSSLKVSVFYGGVPIRTDIENIKKSCPQIIVGTPGRLLDLVKQKALSLDNIKHFI 525
RFSKYM ++KV+VF+GG+ I+ D E +K P I+VGTPGR+L L++ K L+L +KHF+
Sbjct: 132 RFSKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKLLKHFV 191
Query: 526 IDECDKVLESVSMRADVQAIFKLTPRSKQVMMFSATLSKEIRPICKKFMTDPLEIFIDND 705
+DECDK+LE + MR DVQ IF+ TP KQVMMFSATLSK+IRP+CKKFM DP+E+++D++
Sbjct: 192 LDECDKMLEQLDMRRDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDE 251
Query: 706 SKLTLHGLKQHYIKLTE 756
+KLTLHGL+QHY+ L E
Sbjct: 252 AKLTLHGLQQHYVNLKE 268
>sp|Q18212|UAP56_CAEEL Spliceosome RNA helicase BAT1 homolog (DEAD-box protein UAP56)
Length = 425
Score = 345 bits (884), Expect = 1e-94
Identities = 160/252 (63%), Positives = 205/252 (81%)
Frame = +1
Query: 1 EDEQVVITANDAKKTVKDSYVSMHSSGFRDFLLKPELLRSIIDCGFEHPSQVQHECIPQA 180
+D+Q + DA+KT K +Y S+HSSGFRDFLLKPE+LR+I DCGFEHPS+VQHECIPQA
Sbjct: 17 QDKQPEVGGGDARKT-KGTYASIHSSGFRDFLLKPEILRAIGDCGFEHPSEVQHECIPQA 75
Query: 181 ILSMDVLCQAKSGMGKTAVFVLATLQQLDIDESSSRVLVLCHTRELAFQISKEYERFSKY 360
IL MDV+CQAKSGMGKTAVFV+ TLQQL+ + V+ +CHTRELAFQISKEYERFSKY
Sbjct: 76 ILGMDVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISKEYERFSKY 135
Query: 361 MSSLKVSVFYGGVPIRTDIENIKKSCPQIIVGTPGRLLDLVKQKALSLDNIKHFIIDECD 540
+ +KV+VF+GG+ I+ D E + CP I+VGTPGR+L L + L LD +K+F++DECD
Sbjct: 136 LPGVKVAVFFGGMAIKKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECD 195
Query: 541 KVLESVSMRADVQAIFKLTPRSKQVMMFSATLSKEIRPICKKFMTDPLEIFIDNDSKLTL 720
K++ MR DVQ I K+TP+ KQVMMFSATL KE+R +CK+FM DP+E+++D+++KLTL
Sbjct: 196 KMIGDADMRRDVQEIVKMTPQQKQVMMFSATLPKELRTVCKRFMQDPMEVYVDDEAKLTL 255
Query: 721 HGLKQHYIKLTE 756
HGL+QHY+KL E
Sbjct: 256 HGLQQHYVKLKE 267
>sp|O13792|UAP56_SCHPO ATP-dependent RNA helicase uap56
Length = 434
Score = 330 bits (846), Expect = 3e-90
Identities = 159/245 (64%), Positives = 196/245 (80%), Gaps = 2/245 (0%)
Frame = +1
Query: 28 NDAKKTVKDSYVSMHSSGFRDFLLKPELLRSIIDCGFEHPSQVQHECIPQAILSMDVLCQ 207
N K K SYV +HS+GFRDFLLKPELLR+I D GFEHPS+VQ CIPQ+IL DVLCQ
Sbjct: 35 NGEKSDKKGSYVGIHSTGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQ 94
Query: 208 AKSGMGKTAVFVLATLQQLDIDESSSRVLVLCHTRELAFQISKEYERFSKYMSSLKVSVF 387
AKSGMGKTAVFVL+TLQQ++ + VLVLCHTRELAFQI EY RFSKY+ ++ +VF
Sbjct: 95 AKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVF 154
Query: 388 YGGVPIRTDIENI--KKSCPQIIVGTPGRLLDLVKQKALSLDNIKHFIIDECDKVLESVS 561
YGG+ I+ D+E K P I+V TPGRL LV++K L ++++KHF++DECDK+LESV
Sbjct: 155 YGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVD 214
Query: 562 MRADVQAIFKLTPRSKQVMMFSATLSKEIRPICKKFMTDPLEIFIDNDSKLTLHGLKQHY 741
MR D+Q +F+ TP KQVMMFSATLS EIRPICKKFM +PLEI++D+++KLTLHGL+QHY
Sbjct: 215 MRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHY 274
Query: 742 IKLTE 756
+KL E
Sbjct: 275 VKLEE 279
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,991,192
Number of Sequences: 369166
Number of extensions: 1592810
Number of successful extensions: 4876
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4512
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6970118400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)