Planaria EST Database


DrC_03059

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_03059
         (758 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9Z1N5|UAP56_MOUSE  Spliceosome RNA helicase Bat1 (DEAD-b...   374   e-103
sp|Q13838|UAP56_HUMAN  Spliceosome RNA helicase BAT1 (DEAD-b...   374   e-103
sp|Q5WR10|UAP56_CANFA  Spliceosome RNA helicase BAT1 (DEAD-b...   374   e-103
sp|Q5U216|DDX39_RAT  ATP-dependent helicase DDX39 (DEAD-box ...   372   e-103
sp|Q5ZHZ0|UAP56_CHICK  Spliceosome RNA helicase BAT1 (DEAD-b...   372   e-103
sp|Q8VDW0|DDX39_MOUSE  ATP-dependent helicase DDX39 (DEAD-bo...   372   e-103
sp|O00148|DDX39_HUMAN  ATP-dependent helicase DDX39 (DEAD-bo...   371   e-102
sp|Q27268|UAP56_DROME  ATP-dependent RNA helicase WM6 (DEAD-...   362   e-100
sp|Q18212|UAP56_CAEEL  Spliceosome RNA helicase BAT1 homolog...   345   1e-94
sp|O13792|UAP56_SCHPO  ATP-dependent RNA helicase uap56           330   3e-90
>sp|Q9Z1N5|UAP56_MOUSE Spliceosome RNA helicase Bat1 (DEAD-box protein UAP56) (56 kDa
           U2AF65 associated protein) (HLA-B associated transcript
           1)
 sp|Q63413|UAP56_RAT Spliceosome RNA helicase Bat1 (DEAD-box protein UAP56) (56 kDa
           U2AF65 associated protein) (ATP-dependent RNA helicase
           p47)
          Length = 428

 Score =  374 bits (960), Expect = e-103
 Identities = 181/258 (70%), Positives = 219/258 (84%), Gaps = 6/258 (2%)
 Frame = +1

Query: 1   EDEQVVITAN------DAKKTVKDSYVSMHSSGFRDFLLKPELLRSIIDCGFEHPSQVQH 162
           ED++V   A        AKK VK SYVS+HSSGFRDFLLKPELLR+I+DCGFEHPS+VQH
Sbjct: 14  EDDEVETAAGADGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQH 73

Query: 163 ECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLDIDESSSRVLVLCHTRELAFQISKEY 342
           ECIPQAIL MDVLCQAKSGMGKTAVFVLATLQQL+       VLV+CHTRELAFQISKEY
Sbjct: 74  ECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEY 133

Query: 343 ERFSKYMSSLKVSVFYGGVPIRTDIENIKKSCPQIIVGTPGRLLDLVKQKALSLDNIKHF 522
           ERFSKYM ++KV+VF+GG+ I+ D E +KK+CP I+VGTPGR+L L + K+L+L +IKHF
Sbjct: 134 ERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHF 193

Query: 523 IIDECDKVLESVSMRADVQAIFKLTPRSKQVMMFSATLSKEIRPICKKFMTDPLEIFIDN 702
           I+DECDK+LE + MR DVQ IF++TP  KQVMMFSATLSKEIRP+C+KFM DP+EIF+D+
Sbjct: 194 ILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDD 253

Query: 703 DSKLTLHGLKQHYIKLTE 756
           ++KLTLHGL+Q+Y+KL +
Sbjct: 254 ETKLTLHGLQQYYVKLKD 271
>sp|Q13838|UAP56_HUMAN Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
           U2AF65 associated protein) (ATP-dependent RNA helicase
           p47) (HLA-B associated transcript-1)
 sp|Q29024|UAP56_PIG Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
           U2AF65 associated protein)
 sp|P60024|UAP56_PANTR Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
           U2AF65 associated protein)
 sp|Q5TM17|UAP56_MACMU Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
           U2AF65 associated protein)
 sp|Q5RE47|UAP56_PONPY Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
           U2AF65 associated protein)
          Length = 428

 Score =  374 bits (960), Expect = e-103
 Identities = 181/258 (70%), Positives = 219/258 (84%), Gaps = 6/258 (2%)
 Frame = +1

Query: 1   EDEQVVITAND------AKKTVKDSYVSMHSSGFRDFLLKPELLRSIIDCGFEHPSQVQH 162
           ED++V   A        AKK VK SYVS+HSSGFRDFLLKPELLR+I+DCGFEHPS+VQH
Sbjct: 14  EDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQH 73

Query: 163 ECIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLDIDESSSRVLVLCHTRELAFQISKEY 342
           ECIPQAIL MDVLCQAKSGMGKTAVFVLATLQQL+       VLV+CHTRELAFQISKEY
Sbjct: 74  ECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEY 133

Query: 343 ERFSKYMSSLKVSVFYGGVPIRTDIENIKKSCPQIIVGTPGRLLDLVKQKALSLDNIKHF 522
           ERFSKYM ++KV+VF+GG+ I+ D E +KK+CP I+VGTPGR+L L + K+L+L +IKHF
Sbjct: 134 ERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHF 193

Query: 523 IIDECDKVLESVSMRADVQAIFKLTPRSKQVMMFSATLSKEIRPICKKFMTDPLEIFIDN 702
           I+DECDK+LE + MR DVQ IF++TP  KQVMMFSATLSKEIRP+C+KFM DP+EIF+D+
Sbjct: 194 ILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDD 253

Query: 703 DSKLTLHGLKQHYIKLTE 756
           ++KLTLHGL+Q+Y+KL +
Sbjct: 254 ETKLTLHGLQQYYVKLKD 271
>sp|Q5WR10|UAP56_CANFA Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
           U2AF65 associated protein)
          Length = 428

 Score =  374 bits (959), Expect = e-103
 Identities = 181/257 (70%), Positives = 217/257 (84%), Gaps = 5/257 (1%)
 Frame = +1

Query: 1   EDEQVVITAND-----AKKTVKDSYVSMHSSGFRDFLLKPELLRSIIDCGFEHPSQVQHE 165
           EDE       D     AKK VK SYVS+HSSGFRDFLLKPELLR+I+DCGFEHPS+VQHE
Sbjct: 15  EDEVETAAGGDGSEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHE 74

Query: 166 CIPQAILSMDVLCQAKSGMGKTAVFVLATLQQLDIDESSSRVLVLCHTRELAFQISKEYE 345
           CIPQAIL MDVLCQAKSGMGKTAVFVLATLQQL+       VLV+CHTRELAFQISKEYE
Sbjct: 75  CIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYE 134

Query: 346 RFSKYMSSLKVSVFYGGVPIRTDIENIKKSCPQIIVGTPGRLLDLVKQKALSLDNIKHFI 525
           RFSKYM ++KV+VF+GG+ I+ D E +KK+CP I+VGTPGR+L L + K+L+L +IKHFI
Sbjct: 135 RFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFI 194

Query: 526 IDECDKVLESVSMRADVQAIFKLTPRSKQVMMFSATLSKEIRPICKKFMTDPLEIFIDND 705
           +DECDK+LE + MR DVQ IF++TP  KQVMMFSATLSKEIRP+C+KFM DP+EIF+D++
Sbjct: 195 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDE 254

Query: 706 SKLTLHGLKQHYIKLTE 756
           +KLTLHGL+Q+Y+KL +
Sbjct: 255 TKLTLHGLQQYYVKLKD 271
>sp|Q5U216|DDX39_RAT ATP-dependent helicase DDX39 (DEAD-box protein 39) (Nuclear RNA
           helicase, DECD variant of DEAD box family)
          Length = 427

 Score =  372 bits (956), Expect = e-103
 Identities = 177/256 (69%), Positives = 218/256 (85%), Gaps = 4/256 (1%)
 Frame = +1

Query: 1   EDEQVVI----TANDAKKTVKDSYVSMHSSGFRDFLLKPELLRSIIDCGFEHPSQVQHEC 168
           EDE+  +    T    KK VK SYVS+HSSGFRDFLLKPELLR+I+DCGFEHPS+VQHEC
Sbjct: 15  EDEEPQVPQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHEC 74

Query: 169 IPQAILSMDVLCQAKSGMGKTAVFVLATLQQLDIDESSSRVLVLCHTRELAFQISKEYER 348
           IPQAIL MDVLCQAKSGMGKTAVFVLATLQQ++       VLV+CHTRELAFQISKEYER
Sbjct: 75  IPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPINGQVSVLVMCHTRELAFQISKEYER 134

Query: 349 FSKYMSSLKVSVFYGGVPIRTDIENIKKSCPQIIVGTPGRLLDLVKQKALSLDNIKHFII 528
           FSKYM S+KVSVF+GG+ I+ D + +KK+CP ++VGTPGR+L LV+ ++L+L N+KHF++
Sbjct: 135 FSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVL 194

Query: 529 DECDKVLESVSMRADVQAIFKLTPRSKQVMMFSATLSKEIRPICKKFMTDPLEIFIDNDS 708
           DECDK+LE + MR DVQ IF+LTP  KQ MMFSATLSKEIRP+C+KFM DP+E+F+D+++
Sbjct: 195 DECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDET 254

Query: 709 KLTLHGLKQHYIKLTE 756
           KLTLHGL+Q+Y+KL +
Sbjct: 255 KLTLHGLQQYYVKLKD 270
>sp|Q5ZHZ0|UAP56_CHICK Spliceosome RNA helicase BAT1 (DEAD-box protein UAP56) (56 kDa
           U2AF65 associated protein)
          Length = 428

 Score =  372 bits (956), Expect = e-103
 Identities = 176/240 (73%), Positives = 212/240 (88%)
 Frame = +1

Query: 37  KKTVKDSYVSMHSSGFRDFLLKPELLRSIIDCGFEHPSQVQHECIPQAILSMDVLCQAKS 216
           KK VK SYVS+HSSGFRDFLLKPELLR+I+DCGFEHPS+VQHECIPQAIL MDVLCQAKS
Sbjct: 32  KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS 91

Query: 217 GMGKTAVFVLATLQQLDIDESSSRVLVLCHTRELAFQISKEYERFSKYMSSLKVSVFYGG 396
           GMGKTAVFVLATLQQL+       VLV+CHTRELAFQISKEYERFSKYM S+KV+VF+GG
Sbjct: 92  GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGG 151

Query: 397 VPIRTDIENIKKSCPQIIVGTPGRLLDLVKQKALSLDNIKHFIIDECDKVLESVSMRADV 576
           + ++ D E +KK+CP I+VGTPGR+L L + K+L+L +IKHFI+DECDK+LE + MR DV
Sbjct: 152 LAVKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDV 211

Query: 577 QAIFKLTPRSKQVMMFSATLSKEIRPICKKFMTDPLEIFIDNDSKLTLHGLKQHYIKLTE 756
           Q IF++TP  KQVMMFSATLSKEIRP+C+KFM DP+EIF+D+++KLTLHGL+Q+Y+KL +
Sbjct: 212 QEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD 271
>sp|Q8VDW0|DDX39_MOUSE ATP-dependent helicase DDX39 (DEAD-box protein 39)
          Length = 427

 Score =  372 bits (954), Expect = e-103
 Identities = 173/240 (72%), Positives = 212/240 (88%)
 Frame = +1

Query: 37  KKTVKDSYVSMHSSGFRDFLLKPELLRSIIDCGFEHPSQVQHECIPQAILSMDVLCQAKS 216
           KK VK SYVS+HSSGFRDFLLKPELLR+I+DCGFEHPS+VQHECIPQAIL MDVLCQAKS
Sbjct: 31  KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS 90

Query: 217 GMGKTAVFVLATLQQLDIDESSSRVLVLCHTRELAFQISKEYERFSKYMSSLKVSVFYGG 396
           GMGKTAVFVLATLQQ++       VLV+CHTRELAFQISKEYERFSKYM S+KVSVF+GG
Sbjct: 91  GMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGG 150

Query: 397 VPIRTDIENIKKSCPQIIVGTPGRLLDLVKQKALSLDNIKHFIIDECDKVLESVSMRADV 576
           + I+ D + +KK+CP ++VGTPGR+L LV+ ++L+L N+KHF++DECDK+LE + MR DV
Sbjct: 151 LSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDV 210

Query: 577 QAIFKLTPRSKQVMMFSATLSKEIRPICKKFMTDPLEIFIDNDSKLTLHGLKQHYIKLTE 756
           Q IF+LTP  KQ MMFSATLSKEIRP+C+KFM DP+E+F+D+++KLTLHGL+Q+Y+KL +
Sbjct: 211 QEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKD 270
>sp|O00148|DDX39_HUMAN ATP-dependent helicase DDX39 (DEAD-box protein 39) (Nuclear RNA
           helicase URH49)
          Length = 427

 Score =  371 bits (953), Expect = e-102
 Identities = 172/240 (71%), Positives = 211/240 (87%)
 Frame = +1

Query: 37  KKTVKDSYVSMHSSGFRDFLLKPELLRSIIDCGFEHPSQVQHECIPQAILSMDVLCQAKS 216
           KK +K SYVS+HSSGFRDFLLKPELLR+I+DCGFEHPS+VQHECIPQAIL MDVLCQAKS
Sbjct: 31  KKDIKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKS 90

Query: 217 GMGKTAVFVLATLQQLDIDESSSRVLVLCHTRELAFQISKEYERFSKYMSSLKVSVFYGG 396
           GMGKTAVFVLATLQQ++       VLV+CHTRELAFQISKEYERFSKYM S+KVSVF+GG
Sbjct: 91  GMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGG 150

Query: 397 VPIRTDIENIKKSCPQIIVGTPGRLLDLVKQKALSLDNIKHFIIDECDKVLESVSMRADV 576
           + I+ D E +KK+CP ++VGTPGR+L LV+ ++ SL N+KHF++DECDK+LE + MR DV
Sbjct: 151 LSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLDMRRDV 210

Query: 577 QAIFKLTPRSKQVMMFSATLSKEIRPICKKFMTDPLEIFIDNDSKLTLHGLKQHYIKLTE 756
           Q IF+LTP  KQ MMFSATLSK+IRP+C+KFM DP+E+F+D+++KLTLHGL+Q+Y+KL +
Sbjct: 211 QEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKD 270
>sp|Q27268|UAP56_DROME ATP-dependent RNA helicase WM6 (DEAD-box protein UAP56) (HEL/UAP56)
          Length = 424

 Score =  362 bits (929), Expect = e-100
 Identities = 172/257 (66%), Positives = 216/257 (84%), Gaps = 5/257 (1%)
 Frame = +1

Query: 1   EDEQVVITAND----AKKTVKDSYVSMHSSGFRDFLLKPELLRSIIDCGFEHPSQVQHEC 168
           ++EQ   TA +     KK VK +YVS+HSSGFRDFLLKPE+LR+I+DCGFEHPS+VQHEC
Sbjct: 12  DEEQTETTAVENQEAPKKDVKGTYVSIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHEC 71

Query: 169 IPQAILSMDVLCQAKSGMGKTAVFVLATLQQLD-IDESSSRVLVLCHTRELAFQISKEYE 345
           IPQA+L MD+LCQAKSGMGKTAVFVLATLQQL+  D ++  VLV+CHTRELAFQISKEYE
Sbjct: 72  IPQAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYE 131

Query: 346 RFSKYMSSLKVSVFYGGVPIRTDIENIKKSCPQIIVGTPGRLLDLVKQKALSLDNIKHFI 525
           RFSKYM ++KV+VF+GG+ I+ D E +K   P I+VGTPGR+L L++ K L+L  +KHF+
Sbjct: 132 RFSKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKLLKHFV 191

Query: 526 IDECDKVLESVSMRADVQAIFKLTPRSKQVMMFSATLSKEIRPICKKFMTDPLEIFIDND 705
           +DECDK+LE + MR DVQ IF+ TP  KQVMMFSATLSK+IRP+CKKFM DP+E+++D++
Sbjct: 192 LDECDKMLEQLDMRRDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDE 251

Query: 706 SKLTLHGLKQHYIKLTE 756
           +KLTLHGL+QHY+ L E
Sbjct: 252 AKLTLHGLQQHYVNLKE 268
>sp|Q18212|UAP56_CAEEL Spliceosome RNA helicase BAT1 homolog (DEAD-box protein UAP56)
          Length = 425

 Score =  345 bits (884), Expect = 1e-94
 Identities = 160/252 (63%), Positives = 205/252 (81%)
 Frame = +1

Query: 1   EDEQVVITANDAKKTVKDSYVSMHSSGFRDFLLKPELLRSIIDCGFEHPSQVQHECIPQA 180
           +D+Q  +   DA+KT K +Y S+HSSGFRDFLLKPE+LR+I DCGFEHPS+VQHECIPQA
Sbjct: 17  QDKQPEVGGGDARKT-KGTYASIHSSGFRDFLLKPEILRAIGDCGFEHPSEVQHECIPQA 75

Query: 181 ILSMDVLCQAKSGMGKTAVFVLATLQQLDIDESSSRVLVLCHTRELAFQISKEYERFSKY 360
           IL MDV+CQAKSGMGKTAVFV+ TLQQL+  +    V+ +CHTRELAFQISKEYERFSKY
Sbjct: 76  ILGMDVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISKEYERFSKY 135

Query: 361 MSSLKVSVFYGGVPIRTDIENIKKSCPQIIVGTPGRLLDLVKQKALSLDNIKHFIIDECD 540
           +  +KV+VF+GG+ I+ D E +   CP I+VGTPGR+L L +   L LD +K+F++DECD
Sbjct: 136 LPGVKVAVFFGGMAIKKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECD 195

Query: 541 KVLESVSMRADVQAIFKLTPRSKQVMMFSATLSKEIRPICKKFMTDPLEIFIDNDSKLTL 720
           K++    MR DVQ I K+TP+ KQVMMFSATL KE+R +CK+FM DP+E+++D+++KLTL
Sbjct: 196 KMIGDADMRRDVQEIVKMTPQQKQVMMFSATLPKELRTVCKRFMQDPMEVYVDDEAKLTL 255

Query: 721 HGLKQHYIKLTE 756
           HGL+QHY+KL E
Sbjct: 256 HGLQQHYVKLKE 267
>sp|O13792|UAP56_SCHPO ATP-dependent RNA helicase uap56
          Length = 434

 Score =  330 bits (846), Expect = 3e-90
 Identities = 159/245 (64%), Positives = 196/245 (80%), Gaps = 2/245 (0%)
 Frame = +1

Query: 28  NDAKKTVKDSYVSMHSSGFRDFLLKPELLRSIIDCGFEHPSQVQHECIPQAILSMDVLCQ 207
           N  K   K SYV +HS+GFRDFLLKPELLR+I D GFEHPS+VQ  CIPQ+IL  DVLCQ
Sbjct: 35  NGEKSDKKGSYVGIHSTGFRDFLLKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQ 94

Query: 208 AKSGMGKTAVFVLATLQQLDIDESSSRVLVLCHTRELAFQISKEYERFSKYMSSLKVSVF 387
           AKSGMGKTAVFVL+TLQQ++  +    VLVLCHTRELAFQI  EY RFSKY+  ++ +VF
Sbjct: 95  AKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVF 154

Query: 388 YGGVPIRTDIENI--KKSCPQIIVGTPGRLLDLVKQKALSLDNIKHFIIDECDKVLESVS 561
           YGG+ I+ D+E    K   P I+V TPGRL  LV++K L ++++KHF++DECDK+LESV 
Sbjct: 155 YGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESVD 214

Query: 562 MRADVQAIFKLTPRSKQVMMFSATLSKEIRPICKKFMTDPLEIFIDNDSKLTLHGLKQHY 741
           MR D+Q +F+ TP  KQVMMFSATLS EIRPICKKFM +PLEI++D+++KLTLHGL+QHY
Sbjct: 215 MRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHY 274

Query: 742 IKLTE 756
           +KL E
Sbjct: 275 VKLEE 279
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,991,192
Number of Sequences: 369166
Number of extensions: 1592810
Number of successful extensions: 4876
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4512
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6970118400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)