Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_03056
(345 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P80395|GGN1_RANRU Gaegurin-1 30 2.3
sp|Q6FR93|ATG20_CANGA Autophagy-related protein 20 28 5.0
sp|P47108|YJ11_YEAST Hypothetical 135.1 kDa protein in GEF1... 28 5.0
sp|P16237|HMDH_SCHMA 3-hydroxy-3-methylglutaryl-coenzyme A ... 28 6.6
sp|Q6CNX6|ATG20_KLULA Autophagy-related protein 20 28 6.6
>sp|P80395|GGN1_RANRU Gaegurin-1
Length = 33
Score = 29.6 bits (65), Expect = 2.3
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = -1
Query: 162 LASLISANNLFSAKNLLK*DNCLASCAASE 73
L SLI A F KNLLK C A+C AS+
Sbjct: 2 LFSLIKAGAKFLGKNLLKQGACYAACKASK 31
>sp|Q6FR93|ATG20_CANGA Autophagy-related protein 20
Length = 753
Score = 28.5 bits (62), Expect = 5.0
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -1
Query: 297 IDSNTLY*QFNLPHNDSWNKLIISC*SISHLPRSSKSSCP 178
I S +L F P+N +WN + S + S LPR+ + P
Sbjct: 412 ISSTSLIEDFLNPNNSNWNDFVTSSATFSMLPRNRLQANP 451
>sp|P47108|YJ11_YEAST Hypothetical 135.1 kDa protein in GEF1-NUP85 intergenic region
Length = 1174
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -1
Query: 189 SSCPCPGGLLASLISANNLFSAKNLLK*DNCLASCAASEVIISNVKKIKKHK 34
SSCP L+ L A NL N+ DN +A+C +++ +++ + K
Sbjct: 155 SSCPTTDFALSYLQDACNLTHVDNITTTDNKIATCYCKHMLLPSLRYFAQTK 206
>sp|P16237|HMDH_SCHMA 3-hydroxy-3-methylglutaryl-coenzyme A reductase (HMG-CoA reductase)
Length = 948
Score = 28.1 bits (61), Expect = 6.6
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Frame = -2
Query: 230 FLADQSVICPDHRNQVVRVQVVYWHLSFQLIIY-------FLPKIF*NEIIVLHLVQ--L 78
FL SV V + + Y+ L +L+ Y L +F N++ V H++ L
Sbjct: 120 FLLSTSVFLLFSDLSVFFIVLEYYLLEIELVNYEHAKRHCLLSHLFSNQLFVDHMLGMFL 179
Query: 77 QKSLFPMSRRSRNTSLEISFDC 12
+ SLF +S S+ LE F C
Sbjct: 180 KTSLFSISTTSKYAYLESIFKC 201
>sp|Q6CNX6|ATG20_KLULA Autophagy-related protein 20
Length = 636
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -1
Query: 261 PHNDSWNKLIISC*SISHLPRS 196
P+N +WN LI S +IS LP+S
Sbjct: 300 PNNKNWNDLITSSLTISSLPKS 321
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,296,196
Number of Sequences: 369166
Number of extensions: 570609
Number of successful extensions: 1443
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 68,354,980
effective HSP length: 82
effective length of database: 53,206,710
effective search space used: 1702614720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)