Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_03053
(144 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q07468|VPS39_YEAST Vacuolar assembly protein VPS39 (Vacu... 28 4.9
sp|Q859W7|YCF2_ANTFO Protein ycf2 28 8.4
>sp|Q07468|VPS39_YEAST Vacuolar assembly protein VPS39 (Vacuolar morphogenesis protein
VAM6)
Length = 1049
Score = 28.5 bits (62), Expect = 4.9
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 11 LQTTYTPTTLFLNVHPDKKKDLPPLIFLYGKRACFSY-N*KIYIY 142
L +T T LN H D K++ IF Y +AC S + K+Y Y
Sbjct: 704 LDVIFTYTDWLLNRHNDSIKEILSSIFFYDSQACSSRDHLKVYGY 748
>sp|Q859W7|YCF2_ANTFO Protein ycf2
Length = 2392
Score = 27.7 bits (60), Expect = 8.4
Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = +1
Query: 10 TTNNIHTHDLVFECPSRQKE-RPPPTYFFVWEASLFFLQLKN 132
T +NIH++DL +++KE + +Y F+ + S FFL +N
Sbjct: 527 TESNIHSYDLSSLTKAKRKEVKSGSSYEFLEKDSFFFLMKEN 568
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,040,842
Number of Sequences: 369166
Number of extensions: 305266
Number of successful extensions: 849
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 68,354,980
effective HSP length: 21
effective length of database: 64,475,545
effective search space used: 1676364170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)