Planaria EST Database


DrC_03053

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_03053
         (144 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q07468|VPS39_YEAST  Vacuolar assembly protein VPS39 (Vacu...    28   4.9  
sp|Q859W7|YCF2_ANTFO  Protein ycf2                                 28   8.4  
>sp|Q07468|VPS39_YEAST Vacuolar assembly protein VPS39 (Vacuolar morphogenesis protein
           VAM6)
          Length = 1049

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +2

Query: 11  LQTTYTPTTLFLNVHPDKKKDLPPLIFLYGKRACFSY-N*KIYIY 142
           L   +T T   LN H D  K++   IF Y  +AC S  + K+Y Y
Sbjct: 704 LDVIFTYTDWLLNRHNDSIKEILSSIFFYDSQACSSRDHLKVYGY 748
>sp|Q859W7|YCF2_ANTFO Protein ycf2
          Length = 2392

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 10  TTNNIHTHDLVFECPSRQKE-RPPPTYFFVWEASLFFLQLKN 132
           T +NIH++DL     +++KE +   +Y F+ + S FFL  +N
Sbjct: 527 TESNIHSYDLSSLTKAKRKEVKSGSSYEFLEKDSFFFLMKEN 568
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,040,842
Number of Sequences: 369166
Number of extensions: 305266
Number of successful extensions: 849
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 68,354,980
effective HSP length: 21
effective length of database: 64,475,545
effective search space used: 1676364170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)