Planaria EST Database


DrC_03047

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_03047
         (510 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P32337|IMB3_YEAST  Importin beta-3 subunit (Karyopherin b...    32   1.1  
sp|Q9W252|RAD50_DROME  DNA repair protein RAD50                    30   2.5  
sp|P36954|RPB9_HUMAN  DNA-directed RNA polymerase II 14.5 kD...    30   4.3  
sp|P43246|MSH2_HUMAN  DNA mismatch repair protein Msh2 (MutS...    28   9.6  
sp|Q9ER63|TNR23_MOUSE  Tumor necrosis factor receptor superf...    28   9.6  
>sp|P32337|IMB3_YEAST Importin beta-3 subunit (Karyopherin beta-3 subunit) (Protein
           secretion enhancer 1)
          Length = 1089

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 211 LLQKACEQCPPSQFTAIMLKNVTHRVAEIEAQ--SKRLQTMMTNRTDWNENKIT 366
           L +K   + PPS    IM KN+TH   E+ AQ  S  L+  ++ R D   +K++
Sbjct: 70  LFRKLALKAPPSSKLMIMSKNITHIRKEVLAQIRSSLLKGFLSERADSIRHKLS 123
>sp|Q9W252|RAD50_DROME DNA repair protein RAD50
          Length = 1318

 Score = 30.4 bits (67), Expect = 2.5
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
 Frame = +1

Query: 187 KKGDKQCNLLQKACEQCP----PSQFTAIMLKNVTHRVAEIEAQSKRLQTMMTNRTDWNE 354
           +K  ++C+ ++  C +C     P +   + ++NV   + + +AQ   + T   N  D   
Sbjct: 235 QKAQRKCDAIKAQCSECEEEMKPIEARLVEIRNVEFEIGKYQAQKVEMDTKHKNCKDQIS 294

Query: 355 NKITKIK 375
               KIK
Sbjct: 295 TLTLKIK 301
>sp|P36954|RPB9_HUMAN DNA-directed RNA polymerase II 14.5 kDa polypeptide (RPB9)
           (RPB14.5)
 sp|P60899|RPB9_PIG DNA-directed RNA polymerase II 14.5 kDa polypeptide (RPB9)
           (RPB14.5)
 sp|P60898|RPB9_MOUSE DNA-directed RNA polymerase II 14.5 kDa polypeptide (RPB9)
           (RPB14.5)
          Length = 125

 Score = 29.6 bits (65), Expect = 4.3
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
 Frame = +1

Query: 160 CDSFQSVCYKKGDKQCNLLQKACEQCPPSQ---FTAIMLKNVTHRVAEI 297
           C    ++ Y K DK+  +L  AC  C   Q    + I +  +TH V E+
Sbjct: 17  CQECNNMLYPKEDKENRILLYACRNCDYQQEADNSCIYVNKITHEVDEL 65
>sp|P43246|MSH2_HUMAN DNA mismatch repair protein Msh2 (MutS protein homolog 2)
          Length = 934

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 14/72 (19%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = +1

Query: 100  CEKPRSLCTPDFPFLAPDLGCDSFQSV---CYKKGDKQCNLLQKACEQCPPSQFTAIMLK 270
            C K ++L   +F ++    G D  +     CY + ++   ++Q+   +     FT +  +
Sbjct: 843  CAKQKALELEEFQYIGESQGYDIMEPAAKKCYLEREQGEKIIQEFLSKVKQMPFTEMSEE 902

Query: 271  NVTHRVAEIEAQ 306
            N+T ++ +++A+
Sbjct: 903  NITIKLKQLKAE 914
>sp|Q9ER63|TNR23_MOUSE Tumor necrosis factor receptor superfamily member 23 precursor
           (Tumor necrosis factor receptor p60 homolog 1) (TNF
           receptor family member SOB) (Decoy TRAIL receptor 1)
           (TNF receptor homolog 1)
          Length = 176

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +1

Query: 52  MLVFTVFLYFLIDFANCEKPRSLCTPDFPFLAPDLGCDSFQSVCYKKGDKQCNLLQKACE 231
           +L+  + L+  + FA  E     C PD  + + D+ C +  S  + K   +    Q  CE
Sbjct: 15  LLLLLLNLFLPVIFAMPESYSFNC-PDGEYQSNDVCCKTCPSGTFVKAPCKIPHTQGQCE 73

Query: 232 QCPPSQFT 255
           +C P  FT
Sbjct: 74  KCHPGTFT 81
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,225,369
Number of Sequences: 369166
Number of extensions: 907163
Number of successful extensions: 2414
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2414
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3255600150
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)