Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_03044
(885 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NFZ6|TBB2_ECHMU Tubulin beta-2 chain (Beta-tubulin 2) 395 e-110
sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) 394 e-109
sp|P30883|TBB4_XENLA Tubulin beta-4 chain 394 e-109
sp|P68372|TBBX_MOUSE Tubulin beta-? chain >gi|55977480|sp|P... 394 e-109
sp|P36221|TBB1_NOTCO Tubulin beta-1 chain (Beta-1 tubulin) 393 e-109
sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain >gi|56754798|sp|P... 392 e-109
sp|P13602|TBB2_XENLA Tubulin beta-2 chain (Beta-2 tubulin) 391 e-108
sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin cla... 391 e-108
sp|O17449|TBB1_MANSE Tubulin beta-1 chain (Beta-1 tubulin) 391 e-108
sp|P18241|TBB1_BRUPA Tubulin beta-1 chain (Beta-1 tubulin) 391 e-108
>sp|Q9NFZ6|TBB2_ECHMU Tubulin beta-2 chain (Beta-tubulin 2)
Length = 445
Score = 395 bits (1015), Expect = e-110
Identities = 179/261 (68%), Positives = 220/261 (84%), Gaps = 1/261 (0%)
Frame = +2
Query: 2 YVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKFVPRAIL 181
++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EA+GGK+VPRAIL
Sbjct: 6 HIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEASGGKYVPRAIL 65
Query: 182 TDLEPATMETLRGSPYGQLFRPDNFIWGQRGSSNNWAKGHYTEGAELLESVMDILRKEAE 361
DLEP TM+++R P+GQ+FRPDNF++GQ G+ NNWAKGHYTEGAEL++SV+D++RKEAE
Sbjct: 66 VDLEPGTMDSVRAGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVIRKEAE 125
Query: 362 GCDCLQGFQLAHSIXXXXXXXXXTLLLQRIKDEYPDRISITFSVYPSPKVSDVVVEPYNA 541
CDCLQGFQL HS+ TLL+ +I++EYPDRI +T+SV PSPKVSD VVEPYNA
Sbjct: 126 SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMVTYSVVPSPKVSDTVVEPYNA 185
Query: 542 VLSIHLMLDYSDETVVIDNEALFDICQNTLKIA-PSYGDLNHLISATMGGVTTCFRFPGQ 718
LS+H +++ +DET IDNEAL+DIC TLK++ P+YGDLNHL+SATM GVTTC RFPGQ
Sbjct: 186 TLSVHQLVENTDETYCIDNEALYDICFRTLKLSNPTYGDLNHLVSATMSGVTTCLRFPGQ 245
Query: 719 LNADLRKLAVNMGSFSKITFF 781
LNADLRKLAVNM F ++ FF
Sbjct: 246 LNADLRKLAVNMVPFPRLHFF 266
Score = 62.0 bits (149), Expect = 2e-09
Identities = 27/36 (75%), Positives = 31/36 (86%)
Frame = +1
Query: 778 FFMPGFVPLTSRGNQPYKNISVPSLVQQMYDAKNMM 885
FFMPGF PLTSRG+Q Y+ +SVP L QQM+DAKNMM
Sbjct: 265 FFMPGFAPLTSRGSQQYRALSVPELTQQMFDAKNMM 300
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
Length = 447
Score = 394 bits (1011), Expect = e-109
Identities = 180/261 (68%), Positives = 218/261 (83%), Gaps = 1/261 (0%)
Frame = +2
Query: 2 YVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKFVPRAIL 181
++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATGGK+VPRA+L
Sbjct: 6 HMQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVL 65
Query: 182 TDLEPATMETLRGSPYGQLFRPDNFIWGQRGSSNNWAKGHYTEGAELLESVMDILRKEAE 361
DLEP TM+++R P+GQ+FRPDNF++GQ G+ NNWAKGHYTEGAEL++SV+D++RKEAE
Sbjct: 66 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 125
Query: 362 GCDCLQGFQLAHSIXXXXXXXXXTLLLQRIKDEYPDRISITFSVYPSPKVSDVVVEPYNA 541
CDCLQGFQL HS+ TLL+ +I++EYPDRI TFSV PSPKVSD VVEPYNA
Sbjct: 126 SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA 185
Query: 542 VLSIHLMLDYSDETVVIDNEALFDICQNTLKI-APSYGDLNHLISATMGGVTTCFRFPGQ 718
LS+H +++ +DET IDNEAL+DIC TLK+ P+YGDLNHL+SATM GVTTC RFPGQ
Sbjct: 186 TLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ 245
Query: 719 LNADLRKLAVNMGSFSKITFF 781
LNADLRKLAVNM F ++ FF
Sbjct: 246 LNADLRKLAVNMVPFPRLHFF 266
Score = 60.8 bits (146), Expect = 5e-09
Identities = 26/36 (72%), Positives = 31/36 (86%)
Frame = +1
Query: 778 FFMPGFVPLTSRGNQPYKNISVPSLVQQMYDAKNMM 885
FFMPGF PLTSRG+Q Y+ ++VP L QQM+DAKNMM
Sbjct: 265 FFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
Length = 445
Score = 394 bits (1011), Expect = e-109
Identities = 180/261 (68%), Positives = 218/261 (83%), Gaps = 1/261 (0%)
Frame = +2
Query: 2 YVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKFVPRAIL 181
++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATGGK+VPRA+L
Sbjct: 6 HLQAGQCGNQIGAKFWEVISDEHGIDPTGAYHGDSDLQLERINVYYNEATGGKYVPRAVL 65
Query: 182 TDLEPATMETLRGSPYGQLFRPDNFIWGQRGSSNNWAKGHYTEGAELLESVMDILRKEAE 361
DLEP TM+++R P+GQ+FRPDNF++GQ G+ NNWAKGHYTEGAEL++SV+D++RKEAE
Sbjct: 66 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 125
Query: 362 GCDCLQGFQLAHSIXXXXXXXXXTLLLQRIKDEYPDRISITFSVYPSPKVSDVVVEPYNA 541
CDCLQGFQL HS+ TLL+ +I++EYPDRI TFSV PSPKVSD VVEPYNA
Sbjct: 126 SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA 185
Query: 542 VLSIHLMLDYSDETVVIDNEALFDICQNTLKI-APSYGDLNHLISATMGGVTTCFRFPGQ 718
LS+H +++ +DET IDNEAL+DIC TLK+ P+YGDLNHL+SATM GVTTC RFPGQ
Sbjct: 186 TLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ 245
Query: 719 LNADLRKLAVNMGSFSKITFF 781
LNADLRKLAVNM F ++ FF
Sbjct: 246 LNADLRKLAVNMVPFPRLHFF 266
Score = 60.8 bits (146), Expect = 5e-09
Identities = 26/36 (72%), Positives = 31/36 (86%)
Frame = +1
Query: 778 FFMPGFVPLTSRGNQPYKNISVPSLVQQMYDAKNMM 885
FFMPGF PLTSRG+Q Y+ ++VP L QQM+DAKNMM
Sbjct: 265 FFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
Length = 445
Score = 394 bits (1011), Expect = e-109
Identities = 180/261 (68%), Positives = 218/261 (83%), Gaps = 1/261 (0%)
Frame = +2
Query: 2 YVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKFVPRAIL 181
++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATGGK+VPRA+L
Sbjct: 6 HLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKYVPRAVL 65
Query: 182 TDLEPATMETLRGSPYGQLFRPDNFIWGQRGSSNNWAKGHYTEGAELLESVMDILRKEAE 361
DLEP TM+++R P+GQ+FRPDNF++GQ G+ NNWAKGHYTEGAEL++SV+D++RKEAE
Sbjct: 66 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 125
Query: 362 GCDCLQGFQLAHSIXXXXXXXXXTLLLQRIKDEYPDRISITFSVYPSPKVSDVVVEPYNA 541
CDCLQGFQL HS+ TLL+ +I++EYPDRI TFSV PSPKVSD VVEPYNA
Sbjct: 126 SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA 185
Query: 542 VLSIHLMLDYSDETVVIDNEALFDICQNTLKI-APSYGDLNHLISATMGGVTTCFRFPGQ 718
LS+H +++ +DET IDNEAL+DIC TLK+ P+YGDLNHL+SATM GVTTC RFPGQ
Sbjct: 186 TLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ 245
Query: 719 LNADLRKLAVNMGSFSKITFF 781
LNADLRKLAVNM F ++ FF
Sbjct: 246 LNADLRKLAVNMVPFPRLHFF 266
Score = 60.8 bits (146), Expect = 5e-09
Identities = 26/36 (72%), Positives = 31/36 (86%)
Frame = +1
Query: 778 FFMPGFVPLTSRGNQPYKNISVPSLVQQMYDAKNMM 885
FFMPGF PLTSRG+Q Y+ ++VP L QQM+DAKNMM
Sbjct: 265 FFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
>sp|P36221|TBB1_NOTCO Tubulin beta-1 chain (Beta-1 tubulin)
Length = 446
Score = 393 bits (1010), Expect = e-109
Identities = 179/261 (68%), Positives = 220/261 (84%), Gaps = 1/261 (0%)
Frame = +2
Query: 2 YVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKFVPRAIL 181
++Q GQCGNQ+G+KFWE++SDEHG+DP G Y G+SDLQL+RINVYY EA+GGK+VPRA+L
Sbjct: 6 HLQAGQCGNQIGSKFWEVISDEHGIDPTGSYHGDSDLQLDRINVYYNEASGGKYVPRAVL 65
Query: 182 TDLEPATMETLRGSPYGQLFRPDNFIWGQRGSSNNWAKGHYTEGAELLESVMDILRKEAE 361
DLEP TM+++R P+GQ+FRPDNF++GQ G+ NNWAKGHYTEGAEL++SV+D++RKEAE
Sbjct: 66 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 125
Query: 362 GCDCLQGFQLAHSIXXXXXXXXXTLLLQRIKDEYPDRISITFSVYPSPKVSDVVVEPYNA 541
GCDCLQGFQL HS+ TLL+ +I++EYPDRI TFSV PSPKVSD VVEPYNA
Sbjct: 126 GCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA 185
Query: 542 VLSIHLMLDYSDETVVIDNEALFDICQNTLKI-APSYGDLNHLISATMGGVTTCFRFPGQ 718
LS+H +++ +DET IDNEAL+DIC TLK+ P+YGDLNHL+SATM GVTTC RFPGQ
Sbjct: 186 TLSVHQLVENTDETFCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ 245
Query: 719 LNADLRKLAVNMGSFSKITFF 781
LNADLRKLAVNM F ++ FF
Sbjct: 246 LNADLRKLAVNMVPFPRLHFF 266
Score = 58.9 bits (141), Expect = 2e-08
Identities = 24/36 (66%), Positives = 31/36 (86%)
Frame = +1
Query: 778 FFMPGFVPLTSRGNQPYKNISVPSLVQQMYDAKNMM 885
FF+PGF PLTSRG Q Y++++VP L QQM+D+KNMM
Sbjct: 265 FFIPGFAPLTSRGGQQYRSLTVPELTQQMFDSKNMM 300
>sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain
sp|P69895|TBB2_MACMU Tubulin beta-2 chain
sp|P07437|TBB2_HUMAN Tubulin beta-2 chain
sp|P09244|TBB7_CHICK Tubulin beta-7 chain (Tubulin beta 4')
sp|P99024|TBB5_MOUSE Tubulin beta-5 chain
sp|P69897|TBB5_RAT Tubulin beta-5 chain
sp|P69893|TBB1_CRIGR Tubulin beta-1 chain (Beta-tubulin isotype I) (Class I beta
tubulin)
Length = 444
Score = 392 bits (1006), Expect = e-109
Identities = 179/261 (68%), Positives = 218/261 (83%), Gaps = 1/261 (0%)
Frame = +2
Query: 2 YVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKFVPRAIL 181
++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQL+RI+VYY EATGGK+VPRAIL
Sbjct: 6 HIQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLDRISVYYNEATGGKYVPRAIL 65
Query: 182 TDLEPATMETLRGSPYGQLFRPDNFIWGQRGSSNNWAKGHYTEGAELLESVMDILRKEAE 361
DLEP TM+++R P+GQ+FRPDNF++GQ G+ NNWAKGHYTEGAEL++SV+D++RKEAE
Sbjct: 66 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 125
Query: 362 GCDCLQGFQLAHSIXXXXXXXXXTLLLQRIKDEYPDRISITFSVYPSPKVSDVVVEPYNA 541
CDCLQGFQL HS+ TLL+ +I++EYPDRI TFSV PSPKVSD VVEPYNA
Sbjct: 126 SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSPKVSDTVVEPYNA 185
Query: 542 VLSIHLMLDYSDETVVIDNEALFDICQNTLKI-APSYGDLNHLISATMGGVTTCFRFPGQ 718
LS+H +++ +DET IDNEAL+DIC TLK+ P+YGDLNHL+SATM GVTTC RFPGQ
Sbjct: 186 TLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ 245
Query: 719 LNADLRKLAVNMGSFSKITFF 781
LNADLRKLAVNM F ++ FF
Sbjct: 246 LNADLRKLAVNMVPFPRLHFF 266
Score = 59.3 bits (142), Expect = 1e-08
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +1
Query: 778 FFMPGFVPLTSRGNQPYKNISVPSLVQQMYDAKNMM 885
FFMPGF PLTSRG+Q Y+ ++VP L QQ++DAKNMM
Sbjct: 265 FFMPGFAPLTSRGSQQYRALTVPELTQQVFDAKNMM 300
>sp|P13602|TBB2_XENLA Tubulin beta-2 chain (Beta-2 tubulin)
Length = 443
Score = 391 bits (1005), Expect = e-108
Identities = 180/261 (68%), Positives = 217/261 (83%), Gaps = 1/261 (0%)
Frame = +2
Query: 2 YVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKFVPRAIL 181
++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATG KFVPRAIL
Sbjct: 6 HLQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKFVPRAIL 65
Query: 182 TDLEPATMETLRGSPYGQLFRPDNFIWGQRGSSNNWAKGHYTEGAELLESVMDILRKEAE 361
DLEP TM+++R P+GQ+FRPDNF++GQ G+ NNWAKGHYTEGAEL++SV+D++RKE+E
Sbjct: 66 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESE 125
Query: 362 GCDCLQGFQLAHSIXXXXXXXXXTLLLQRIKDEYPDRISITFSVYPSPKVSDVVVEPYNA 541
CDCLQGFQL HS+ TLL+ +I++EYPDRI TFSV PSPKVSD VVEPYNA
Sbjct: 126 SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNA 185
Query: 542 VLSIHLMLDYSDETVVIDNEALFDICQNTLKI-APSYGDLNHLISATMGGVTTCFRFPGQ 718
LS+H +++ +DET IDNEAL+DIC TLK+ P+YGDLNHL+SATM GVTTC RFPGQ
Sbjct: 186 TLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ 245
Query: 719 LNADLRKLAVNMGSFSKITFF 781
LNADLRKLAVNM F ++ FF
Sbjct: 246 LNADLRKLAVNMVPFPRLHFF 266
Score = 59.7 bits (143), Expect = 1e-08
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +1
Query: 778 FFMPGFVPLTSRGNQPYKNISVPSLVQQMYDAKNMM 885
FFMPGF PLTSRG+Q Y+ ++VP L QQM+D+KNMM
Sbjct: 265 FFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
>sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin class-II)
Length = 445
Score = 391 bits (1004), Expect = e-108
Identities = 179/261 (68%), Positives = 217/261 (83%), Gaps = 1/261 (0%)
Frame = +2
Query: 2 YVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKFVPRAIL 181
++Q GQCGNQ+G KFWE++SDEHG+DP G Y G+SDLQLERINVYY EATG K+VPRAIL
Sbjct: 6 HIQAGQCGNQIGAKFWEVISDEHGIDPTGSYHGDSDLQLERINVYYNEATGNKYVPRAIL 65
Query: 182 TDLEPATMETLRGSPYGQLFRPDNFIWGQRGSSNNWAKGHYTEGAELLESVMDILRKEAE 361
DLEP TM+++R P+GQ+FRPDNF++GQ G+ NNWAKGHYTEGAEL++SV+D++RKE+E
Sbjct: 66 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKESE 125
Query: 362 GCDCLQGFQLAHSIXXXXXXXXXTLLLQRIKDEYPDRISITFSVYPSPKVSDVVVEPYNA 541
CDCLQGFQL HS+ TLL+ +I++EYPDRI TFSV PSPKVSD VVEPYNA
Sbjct: 126 SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSPKVSDTVVEPYNA 185
Query: 542 VLSIHLMLDYSDETVVIDNEALFDICQNTLKI-APSYGDLNHLISATMGGVTTCFRFPGQ 718
LS+H +++ +DET IDNEAL+DIC TLK+ P+YGDLNHL+SATM GVTTC RFPGQ
Sbjct: 186 TLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQ 245
Query: 719 LNADLRKLAVNMGSFSKITFF 781
LNADLRKLAVNM F ++ FF
Sbjct: 246 LNADLRKLAVNMVPFPRLHFF 266
Score = 59.7 bits (143), Expect = 1e-08
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = +1
Query: 778 FFMPGFVPLTSRGNQPYKNISVPSLVQQMYDAKNMM 885
FFMPGF PLTSRG+Q Y+ ++VP L QQM+D+KNMM
Sbjct: 265 FFMPGFAPLTSRGSQQYRALTVPELTQQMFDSKNMM 300
>sp|O17449|TBB1_MANSE Tubulin beta-1 chain (Beta-1 tubulin)
Length = 447
Score = 391 bits (1004), Expect = e-108
Identities = 179/261 (68%), Positives = 218/261 (83%), Gaps = 1/261 (0%)
Frame = +2
Query: 2 YVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKFVPRAIL 181
++Q GQCGNQ+G KFWEI+SDEHG+DP G Y G+SDLQLERINVYY EA+GGK+VPRAIL
Sbjct: 6 HIQAGQCGNQIGAKFWEIISDEHGIDPTGAYHGDSDLQLERINVYYNEASGGKYVPRAIL 65
Query: 182 TDLEPATMETLRGSPYGQLFRPDNFIWGQRGSSNNWAKGHYTEGAELLESVMDILRKEAE 361
DLEP TM+++R P+GQ+FRPDNF++GQ G+ NNWAKGHYTEGAEL++SV+D++RKEAE
Sbjct: 66 VDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAE 125
Query: 362 GCDCLQGFQLAHSIXXXXXXXXXTLLLQRIKDEYPDRISITFSVYPSPKVSDVVVEPYNA 541
CDCLQGFQL HS+ TLL+ +I++EYPDRI T+SV PSPKVSD VVEPYNA
Sbjct: 126 SCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNA 185
Query: 542 VLSIHLMLDYSDETVVIDNEALFDICQNTLKIA-PSYGDLNHLISATMGGVTTCFRFPGQ 718
LS+H +++ +DET IDNEAL+DIC TLK++ P+YGDLNHL+S TM GVTTC RFPGQ
Sbjct: 186 TLSVHQLVENTDETYCIDNEALYDICFRTLKLSTPTYGDLNHLVSLTMSGVTTCLRFPGQ 245
Query: 719 LNADLRKLAVNMGSFSKITFF 781
LNADLRKLAVNM F ++ FF
Sbjct: 246 LNADLRKLAVNMVPFPRLHFF 266
Score = 60.8 bits (146), Expect = 5e-09
Identities = 26/36 (72%), Positives = 31/36 (86%)
Frame = +1
Query: 778 FFMPGFVPLTSRGNQPYKNISVPSLVQQMYDAKNMM 885
FFMPGF PLTSRG+Q Y+ ++VP L QQM+DAKNMM
Sbjct: 265 FFMPGFAPLTSRGSQQYRALTVPELTQQMFDAKNMM 300
>sp|P18241|TBB1_BRUPA Tubulin beta-1 chain (Beta-1 tubulin)
Length = 448
Score = 391 bits (1004), Expect = e-108
Identities = 178/261 (68%), Positives = 219/261 (83%), Gaps = 1/261 (0%)
Frame = +2
Query: 2 YVQVGQCGNQMGTKFWEIMSDEHGLDPRGLYRGESDLQLERINVYYTEATGGKFVPRAIL 181
+VQ GQCGNQ+G KFWE++SDEHG+ P G Y+G+SDLQ+ERINVYY EA GGK+VPRA+L
Sbjct: 6 HVQAGQCGNQIGAKFWEVISDEHGVQPDGTYKGDSDLQIERINVYYNEANGGKYVPRAVL 65
Query: 182 TDLEPATMETLRGSPYGQLFRPDNFIWGQRGSSNNWAKGHYTEGAELLESVMDILRKEAE 361
DLEP TM+++RG +GQLFRPDNF++GQ G+ NNWAKGHYTEGAEL+++V+D++RKEAE
Sbjct: 66 VDLEPGTMDSIRGGEFGQLFRPDNFVFGQSGAGNNWAKGHYTEGAELVDNVLDVIRKEAE 125
Query: 362 GCDCLQGFQLAHSIXXXXXXXXXTLLLQRIKDEYPDRISITFSVYPSPKVSDVVVEPYNA 541
GCDCLQGFQL HS+ TLL+ +I++EYPDRI +FSV PSPKVSDVV+EPYNA
Sbjct: 126 GCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMSSFSVVPSPKVSDVVLEPYNA 185
Query: 542 VLSIHLMLDYSDETVVIDNEALFDICQNTLKIA-PSYGDLNHLISATMGGVTTCFRFPGQ 718
LS+H +++ +DET IDNEAL+DIC TLK+A P+YGDLNHL+S TM GVTTC RFPGQ
Sbjct: 186 TLSVHQLVENTDETFCIDNEALYDICFRTLKLANPTYGDLNHLVSVTMSGVTTCLRFPGQ 245
Query: 719 LNADLRKLAVNMGSFSKITFF 781
LNADLRKLAVNM F ++ FF
Sbjct: 246 LNADLRKLAVNMVPFPRLHFF 266
Score = 48.9 bits (115), Expect = 2e-05
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = +1
Query: 778 FFMPGFVPLTSRGNQPYKNISVPSLVQQMYDAKNMM 885
FFMPGF PL++R Y+ ++V L QQM+DAKNMM
Sbjct: 265 FFMPGFAPLSARDAAAYRALNVAELTQQMFDAKNMM 300
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,807,894
Number of Sequences: 369166
Number of extensions: 2075125
Number of successful extensions: 6094
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5270
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8838279920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)