Planaria EST Database


DrC_03035

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_03035
         (681 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5BKM3|CHMP3_XENTR  Charged multivesicular body protein 3...   176   4e-44
sp|Q6NRM7|CHMP3_XENLA  Charged multivesicular body protein 3...   175   9e-44
sp|Q6NY88|CHMP3_BRARE  Charged multivesicular body protein 3...   175   9e-44
sp|Q8CGS4|CHMP3_RAT  Charged multivesicular body protein 3 (...   173   3e-43
sp|Q5RAU5|CHMP3_PONPY  Charged multivesicular body protein 3...   172   6e-43
sp|Q9Y3E7|CHMP3_HUMAN  Charged multivesicular body protein 3...   172   7e-43
sp|Q9CQ10|CHMP3_MOUSE  Charged multivesicular body protein 3...   172   1e-42
sp|Q4R574|CHMP3_MACFA  Charged multivesicular body protein 3...   171   1e-42
sp|Q58CS7|CHMP3_BOVIN  Charged multivesicular body protein 3...   171   2e-42
sp|Q6NXD2|CHM2B_BRARE  Charged multivesicular body protein 2...    95   2e-19
>sp|Q5BKM3|CHMP3_XENTR Charged multivesicular body protein 3 (Chromatin modifying protein
           3) (Vacuolar protein sorting 24)
          Length = 220

 Score =  176 bits (447), Expect = 4e-44
 Identities = 92/198 (46%), Positives = 140/198 (70%)
 Frame = +2

Query: 2   EERKLDRDINSIDRSLKQQELEIKKYAKQGNLDAAKILAKELINAKKSISRLYSAKAQMN 181
           E R +DR I  I R  ++ +  IK+ AK+GN +A  ILAKE++++KK++++LY++KA MN
Sbjct: 26  EMRLIDRQIRDIQREQEKVKRSIKESAKKGNREACVILAKEVVHSKKAVNKLYASKAHMN 85

Query: 182 SVVMNLNHQASLVRMAGTLQKSTEVMKSMSSLIKVPEIQKTMQELSKEMTKAGIMEELVN 361
           SV+M++ +Q +++R++G+LQKSTEVMK+M +L+K+PEIQ TM++LSKEM KAGI+EE++ 
Sbjct: 86  SVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKIPEIQATMRDLSKEMMKAGIIEEMLE 145

Query: 362 DTLXXXXXXXXXXXXXXXXXVDKILFDLTAGAMGAAPDAVRDTLPSGTPVAKGASSSVPV 541
           DT                  +D+ILF++TAGA+G AP  V D LP   P   GA ++   
Sbjct: 146 DTF-EGMEDQDEMEEQAEMEIDRILFEITAGALGKAPSKVTDALPE--PEITGAMAASDE 202

Query: 542 EDDEDFDEMKARLEALRS 595
           E++ED + M++RL ALRS
Sbjct: 203 EEEEDLEAMQSRLAALRS 220
>sp|Q6NRM7|CHMP3_XENLA Charged multivesicular body protein 3 (Chromatin modifying protein
           3) (Vacuolar protein sorting 24)
          Length = 220

 Score =  175 bits (444), Expect = 9e-44
 Identities = 93/198 (46%), Positives = 138/198 (69%)
 Frame = +2

Query: 2   EERKLDRDINSIDRSLKQQELEIKKYAKQGNLDAAKILAKELINAKKSISRLYSAKAQMN 181
           E R +DR I  I R  ++ +  IK+ AK+GN +A  ILAKE++ +KK++++LY++KA MN
Sbjct: 26  EMRVIDRQIRDIQREQEKVKRSIKESAKKGNREACVILAKEVVQSKKAVNKLYASKAHMN 85

Query: 182 SVVMNLNHQASLVRMAGTLQKSTEVMKSMSSLIKVPEIQKTMQELSKEMTKAGIMEELVN 361
           SV+M++ +Q +++R++G+LQKSTEVMK+M +L+K+PEIQ TM+ELSKEM KAGI+EE++ 
Sbjct: 86  SVLMSMKNQLAVLRVSGSLQKSTEVMKAMQNLVKLPEIQATMRELSKEMMKAGIIEEMLE 145

Query: 362 DTLXXXXXXXXXXXXXXXXXVDKILFDLTAGAMGAAPDAVRDTLPSGTPVAKGASSSVPV 541
           DT                  +D+ILF++TAGA+G AP  V D LP   P   GA ++   
Sbjct: 146 DTF-EGMEDQDEMEEQAEMEIDRILFEVTAGALGKAPSKVTDALPE--PEITGAMAASDE 202

Query: 542 EDDEDFDEMKARLEALRS 595
           E++ED + M +RL ALRS
Sbjct: 203 EEEEDLEAMHSRLAALRS 220
>sp|Q6NY88|CHMP3_BRARE Charged multivesicular body protein 3 (Chromatin modifying protein
           3) (Vacuolar protein sorting 24)
          Length = 221

 Score =  175 bits (444), Expect = 9e-44
 Identities = 96/198 (48%), Positives = 136/198 (68%)
 Frame = +2

Query: 2   EERKLDRDINSIDRSLKQQELEIKKYAKQGNLDAAKILAKELINAKKSISRLYSAKAQMN 181
           E R +DR I  I R  ++ +  IK  AK+G  D   ILAKE+I +K++I++LY++KAQMN
Sbjct: 26  EMRVIDRQIRDIQREEEKVKRSIKDAAKKGQKDVCIILAKEMIQSKRAINKLYASKAQMN 85

Query: 182 SVVMNLNHQASLVRMAGTLQKSTEVMKSMSSLIKVPEIQKTMQELSKEMTKAGIMEELVN 361
           SV++++ +Q S++R+AG LQKSTEVMK+M SL+K+PEIQ TM++LSKEM KAGI+EE++ 
Sbjct: 86  SVLLSMKNQLSVLRVAGALQKSTEVMKAMQSLVKIPEIQATMRDLSKEMMKAGIIEEMLE 145

Query: 362 DTLXXXXXXXXXXXXXXXXXVDKILFDLTAGAMGAAPDAVRDTLPSGTPVAKGASSSVPV 541
           DTL                 VDKILF++TAGA+G AP  V D LP    +   A+     
Sbjct: 146 DTL-EGMDDEEEMEEAAEAEVDKILFEITAGALGKAPSKVTD-LPDPVAIGATAAPEEES 203

Query: 542 EDDEDFDEMKARLEALRS 595
           E++E+ +EM++RL ALRS
Sbjct: 204 EEEEEIEEMQSRLAALRS 221
>sp|Q8CGS4|CHMP3_RAT Charged multivesicular body protein 3 (Chromatin modifying protein
           3) (Vacuolar protein sorting 24) (mVps24p)
          Length = 223

 Score =  173 bits (439), Expect = 3e-43
 Identities = 93/199 (46%), Positives = 133/199 (66%), Gaps = 1/199 (0%)
 Frame = +2

Query: 2   EERKLDRDINSIDRSLKQQELEIKKYAKQGNLDAAKILAKELINAKKSISRLYSAKAQMN 181
           E R +DR I  I R  ++ +  +K  AK+G  +   +LAKE+I ++K++S+LY++KA MN
Sbjct: 26  EMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMN 85

Query: 182 SVVMNLNHQASLVRMAGTLQKSTEVMKSMSSLIKVPEIQKTMQELSKEMTKAGIMEELVN 361
           SV+M + +Q +++R+AG+LQKSTEVMK+M SL+K+PEIQ TM+ELSKEM KAGI+EE++ 
Sbjct: 86  SVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLE 145

Query: 362 DTLXXXXXXXXXXXXXXXXXVDKILFDLTAGAMGAAPDAVRDTLPSGTPVAKGASSSVPV 541
           DT                  +D+ILF++TAGA+G AP  V D LP   P    A+S    
Sbjct: 146 DTF-ESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKVTDALPEPEPAGAMAASEGDE 204

Query: 542 EDD-EDFDEMKARLEALRS 595
           EDD ED + M++RL  LRS
Sbjct: 205 EDDEEDLEAMQSRLATLRS 223
>sp|Q5RAU5|CHMP3_PONPY Charged multivesicular body protein 3 (Chromatin modifying protein
           3) (Vacuolar protein sorting 24)
          Length = 222

 Score =  172 bits (437), Expect = 6e-43
 Identities = 91/198 (45%), Positives = 132/198 (66%)
 Frame = +2

Query: 2   EERKLDRDINSIDRSLKQQELEIKKYAKQGNLDAAKILAKELINAKKSISRLYSAKAQMN 181
           E R +DR I  I R  ++ +  +K  AK+G  D   +LAKE+I ++K++S+LY++KA MN
Sbjct: 26  EMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMN 85

Query: 182 SVVMNLNHQASLVRMAGTLQKSTEVMKSMSSLIKVPEIQKTMQELSKEMTKAGIMEELVN 361
           SV+M + +Q +++R+AG+LQKSTEVMK+M SL+K+PEIQ TM+ELSKEM KAGI+EE++ 
Sbjct: 86  SVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLE 145

Query: 362 DTLXXXXXXXXXXXXXXXXXVDKILFDLTAGAMGAAPDAVRDTLPSGTPVAKGASSSVPV 541
           DT                  +D+ILF++TAGA+G AP  V D LP   P    A+S    
Sbjct: 146 DTF-ESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKVTDALPEPEPSGAMAASEDEE 204

Query: 542 EDDEDFDEMKARLEALRS 595
           E++E  + M++RL  LRS
Sbjct: 205 EEEEALEAMQSRLATLRS 222
>sp|Q9Y3E7|CHMP3_HUMAN Charged multivesicular body protein 3 (Chromatin modifying protein
           3) (Vacuolar protein sorting 24) (hVps24)
           (Neuroendocrine differentiation factor)
          Length = 222

 Score =  172 bits (436), Expect = 7e-43
 Identities = 91/198 (45%), Positives = 132/198 (66%)
 Frame = +2

Query: 2   EERKLDRDINSIDRSLKQQELEIKKYAKQGNLDAAKILAKELINAKKSISRLYSAKAQMN 181
           E R +DR I  I R  ++ +  +K  AK+G  D   +LAKE+I ++K++S+LY++KA MN
Sbjct: 26  EMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMN 85

Query: 182 SVVMNLNHQASLVRMAGTLQKSTEVMKSMSSLIKVPEIQKTMQELSKEMTKAGIMEELVN 361
           SV+M + +Q +++R+AG+LQKSTEVMK+M SL+K+PEIQ TM+ELSKEM KAGI+EE++ 
Sbjct: 86  SVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLE 145

Query: 362 DTLXXXXXXXXXXXXXXXXXVDKILFDLTAGAMGAAPDAVRDTLPSGTPVAKGASSSVPV 541
           DT                  +D+ILF++TAGA+G AP  V D LP   P    A+S    
Sbjct: 146 DTF-ESMDDQEEMEEEAEMEIDRILFEITAGALGKAPSKVTDALPEPEPPGAMAASEDEE 204

Query: 542 EDDEDFDEMKARLEALRS 595
           E++E  + M++RL  LRS
Sbjct: 205 EEEEALEAMQSRLATLRS 222
>sp|Q9CQ10|CHMP3_MOUSE Charged multivesicular body protein 3 (Chromatin modifying protein
           3) (Vacuolar protein sorting 24)
          Length = 224

 Score =  172 bits (435), Expect = 1e-42
 Identities = 92/200 (46%), Positives = 133/200 (66%), Gaps = 2/200 (1%)
 Frame = +2

Query: 2   EERKLDRDINSIDRSLKQQELEIKKYAKQGNLDAAKILAKELINAKKSISRLYSAKAQMN 181
           E R +DR I  I R  ++ +  +K  AK+G  +   +LAKE+I ++K++S+LY++KA MN
Sbjct: 26  EMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKEVCVVLAKEMIRSRKAVSKLYASKAHMN 85

Query: 182 SVVMNLNHQASLVRMAGTLQKSTEVMKSMSSLIKVPEIQKTMQELSKEMTKAGIMEELVN 361
           SV+M + +Q +++R+AG+LQKSTEVMK+M SL+K+PEIQ TM+ELSKEM KAGI+EE++ 
Sbjct: 86  SVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLE 145

Query: 362 DTLXXXXXXXXXXXXXXXXXVDKILFDLTAGAMGAAPDAVRDTLPSGTPVAKGASS--SV 535
           DT                  +D+ILF++TAGA+G AP  V D LP   P    A+S    
Sbjct: 146 DTF-ESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKVTDALPEPEPAGAMAASEEGE 204

Query: 536 PVEDDEDFDEMKARLEALRS 595
             ED+ED + M++RL  LRS
Sbjct: 205 EEEDEEDLEAMQSRLATLRS 224
>sp|Q4R574|CHMP3_MACFA Charged multivesicular body protein 3 (Chromatin modifying protein
           3) (Vacuolar protein sorting 24)
          Length = 222

 Score =  171 bits (434), Expect = 1e-42
 Identities = 90/198 (45%), Positives = 132/198 (66%)
 Frame = +2

Query: 2   EERKLDRDINSIDRSLKQQELEIKKYAKQGNLDAAKILAKELINAKKSISRLYSAKAQMN 181
           E R +DR I  I R  ++ +  +K  AK+G  D   +LAKE+I ++K++S+LY++KA MN
Sbjct: 26  EMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMN 85

Query: 182 SVVMNLNHQASLVRMAGTLQKSTEVMKSMSSLIKVPEIQKTMQELSKEMTKAGIMEELVN 361
           SV+M + +Q +++R+AG+LQKSTEVMK+M SL+K+PEI+ TM+ELSKEM KAGI+EE++ 
Sbjct: 86  SVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIRATMRELSKEMMKAGIIEEMLE 145

Query: 362 DTLXXXXXXXXXXXXXXXXXVDKILFDLTAGAMGAAPDAVRDTLPSGTPVAKGASSSVPV 541
           DT                  +D+ILF++TAGA+G AP  V D LP   P    A+S    
Sbjct: 146 DTF-ESMDDQEEMEEAAEMEIDRILFEITAGALGKAPSKVTDALPEPEPSGAMAASDEEE 204

Query: 542 EDDEDFDEMKARLEALRS 595
           E++E  + M++RL  LRS
Sbjct: 205 EEEEALEAMQSRLATLRS 222
>sp|Q58CS7|CHMP3_BOVIN Charged multivesicular body protein 3 (Chromatin modifying protein
           3) (Vacuolar protein sorting 24)
          Length = 222

 Score =  171 bits (433), Expect = 2e-42
 Identities = 90/198 (45%), Positives = 132/198 (66%)
 Frame = +2

Query: 2   EERKLDRDINSIDRSLKQQELEIKKYAKQGNLDAAKILAKELINAKKSISRLYSAKAQMN 181
           E R +DR I  I R  ++ +  +K  AK+G  D   +LAKE+I ++K++S+LY++KA MN
Sbjct: 26  EMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCVVLAKEMIRSRKAVSKLYASKAHMN 85

Query: 182 SVVMNLNHQASLVRMAGTLQKSTEVMKSMSSLIKVPEIQKTMQELSKEMTKAGIMEELVN 361
           SV+M + +Q +++R+AG+LQKSTEVMK+M SL+K+PEIQ TM+ELSKEM KAGI+EE++ 
Sbjct: 86  SVLMGMKNQLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMMKAGIIEEMLE 145

Query: 362 DTLXXXXXXXXXXXXXXXXXVDKILFDLTAGAMGAAPDAVRDTLPSGTPVAKGASSSVPV 541
           DT                  +D+ILF++TAGA+  AP  V D LP   P+   A+S    
Sbjct: 146 DTF-ESMDDQEEMEEAAEMEIDRILFEITAGALXKAPSKVTDALPEPEPLGAMAASEDEE 204

Query: 542 EDDEDFDEMKARLEALRS 595
           E++E  + M++RL  LRS
Sbjct: 205 EEEEALEAMQSRLATLRS 222
>sp|Q6NXD2|CHM2B_BRARE Charged multivesicular body protein 2b (Chromatin modifying protein
           2b) (CHMP2b)
          Length = 214

 Score = 94.7 bits (234), Expect = 2e-19
 Identities = 60/194 (30%), Positives = 104/194 (53%), Gaps = 4/194 (2%)
 Frame = +2

Query: 5   ERKLDRDINSIDRSLKQQELEIKKYAKQGNLDAAKILAKELINAKKSISRLYSAKAQMNS 184
           +R++ RD  ++++  KQ E+EIKK AK GN DA K+LAK+L+  +K  +R Y+  +++ S
Sbjct: 25  QRQIARDRTALEKQEKQLEMEIKKMAKTGNRDACKVLAKQLVQVRKQKTRTYAVSSKVTS 84

Query: 185 VVMNLNHQASLVRMAGTLQKSTEVMKSMSSLIKVPEIQKTMQELSKEMTKAGIMEELVND 364
           +        S ++MAG +  +T+ M++++  +   +  +T+Q   KE  K  + EE++ND
Sbjct: 85  MSTQTKLMNSQMKMAGAMATTTKTMQAVNKKMDPKKTMQTLQNFQKETAKMDMTEEMMND 144

Query: 365 TLXXXXXXXXXXXXXXXXXVDKILFDL---TAGAMGAAPDAVRDTLPSGTPVAKGASSSV 535
           TL                 V+++L ++    +G M  AP A R T  + T  A G S   
Sbjct: 145 TL-DEIFEDSGDEEESQDIVNQVLDEIGIEISGKMAHAPSAARKTPSAATAKADGIS--- 200

Query: 536 PVEDDEDFD-EMKA 574
               DED + ++KA
Sbjct: 201 ----DEDIERQLKA 210
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,324,115
Number of Sequences: 369166
Number of extensions: 871995
Number of successful extensions: 3398
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3380
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5782011865
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)