Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_03028
(846 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9WVR6|LAT2_RAT Large neutral amino acids transporter sm... 227 4e-59
sp|Q9QXW9|LAT2_MOUSE Large neutral amino acids transporter ... 226 5e-59
sp|Q9UHI5|LAT2_HUMAN Large neutral amino acids transporter ... 221 2e-57
sp|Q9Z127|LAT1_MOUSE Large neutral amino acids transporter ... 219 1e-56
sp|Q63016|LAT1_RAT Large neutral amino acids transporter sm... 218 2e-56
sp|Q01650|LAT1_HUMAN Large neutral amino acids transporter ... 213 5e-55
sp|P63116|AAA1_RAT Asc-type amino acid transporter 1 (Asc-1... 202 1e-51
sp|Q9NS82|AAA1_HUMAN Asc-type amino acid transporter 1 (Asc-1) 198 2e-50
sp|Q9UPY5|XCT_HUMAN Cystine/glutamate transporter (Amino ac... 184 3e-46
sp|Q9UM01|YLA1_HUMAN Y+L amino acid transporter 1 (y(+)L-ty... 183 5e-46
>sp|Q9WVR6|LAT2_RAT Large neutral amino acids transporter small subunit 2 (L-type amino
acid transporter 2)
Length = 533
Score = 227 bits (578), Expect = 4e-59
Identities = 116/274 (42%), Positives = 170/274 (62%), Gaps = 1/274 (0%)
Frame = +1
Query: 22 DIGQLTMGFYNGLFAYCGWNYLNCMMEEMKNPVKDLPRAVLISCIIVTVVYMLANVSYFT 201
DIG + + F G FAY GWN+LN + EE+ +P K+LPRA+ IS +VT VY+ AN++Y T
Sbjct: 231 DIGLVALAFLQGSFAYGGWNFLNYVTEELVDPYKNLPRAIFISIPLVTFVYVFANIAYVT 290
Query: 202 ILSPIEIKLTNAVAVRLGLENFSVMWWIIPMFVSMSTFGGVNGIIMTTSRMFLVAAQSDQ 381
+SP E+ +NAVAV G + VM WI+P+ V++STFGGVNG + T+SR+F A+
Sbjct: 291 AMSPQELLASNAVAVTFGEKLLGVMAWIMPISVALSTFGGVNGSLFTSSRLFFAGAREGH 350
Query: 382 MPASLAMISTRLSTPIPSVVFVSLISFVYLIYPDMYVLMNYVGFVTWLTFAIAIVALLYF 561
+P+ LAMI + TPIP+++F L + + L+ DMY L+NYVGF+ +L + + + +
Sbjct: 351 LPSVLAMIHVKRCTPIPALLFTCLSTLLMLVTSDMYTLINYVGFINYLFYGVTVAGQIVL 410
Query: 562 RFAPKYAGLERPFTVHLIFPIVYLLISXXXXXXXXVGGFYESIMGTIIMLTAVPVYFIGI 741
R+ K + RP + L+FPI+YLL +G IMLT VPVYF+G+
Sbjct: 411 RW--KKPDIPRPIKISLLFPIIYLLFWAFLLIFSLWSEPVVCGIGLAIMLTGVPVYFLGV 468
Query: 742 VWK-KPKLFNRKLNDFTIFVQKLFIVVATQPDES 840
W+ KPK FN + T+ QK+ +VV Q +S
Sbjct: 469 YWQHKPKCFNDFIESLTLVSQKMCVVVYPQEGDS 502
>sp|Q9QXW9|LAT2_MOUSE Large neutral amino acids transporter small subunit 2 (L-type amino
acid transporter 2)
Length = 531
Score = 226 bits (577), Expect = 5e-59
Identities = 117/274 (42%), Positives = 169/274 (61%), Gaps = 1/274 (0%)
Frame = +1
Query: 22 DIGQLTMGFYNGLFAYCGWNYLNCMMEEMKNPVKDLPRAVLISCIIVTVVYMLANVSYFT 201
DIG + + F G FAY GWN+LN + EE+ +P K+LPRA+ IS +VT VY+ AN++Y T
Sbjct: 229 DIGLVALAFLQGSFAYGGWNFLNYVTEELVDPYKNLPRAIFISIPLVTFVYVFANIAYVT 288
Query: 202 ILSPIEIKLTNAVAVRLGLENFSVMWWIIPMFVSMSTFGGVNGIIMTTSRMFLVAAQSDQ 381
+SP E+ +NAVAV G + VM WI+P+ V++STFGGVNG + T+SR+F A+
Sbjct: 289 AMSPQELLASNAVAVTFGEKLLGVMAWIMPISVALSTFGGVNGSLFTSSRLFFAGAREGH 348
Query: 382 MPASLAMISTRLSTPIPSVVFVSLISFVYLIYPDMYVLMNYVGFVTWLTFAIAIVALLYF 561
+P+ LAMI + TPIP+++F L + + L+ DMY L+NYVGF+ +L + + + +
Sbjct: 349 LPSVLAMIHVKRCTPIPALLFTCLSTLLMLVTSDMYTLINYVGFINYLFYGVTVAGQIVL 408
Query: 562 RFAPKYAGLERPFTVHLIFPIVYLLISXXXXXXXXVGGFYESIMGTIIMLTAVPVYFIGI 741
R+ K + RP V L+FPI+YLL +G IMLT VPVYF+G+
Sbjct: 409 RW--KKPDIPRPIKVSLLFPIIYLLFWAFLLIFSLWSEPVVCGIGLAIMLTGVPVYFLGV 466
Query: 742 VWK-KPKLFNRKLNDFTIFVQKLFIVVATQPDES 840
W+ KPK FN + T+ QK+ +VV Q S
Sbjct: 467 YWQHKPKCFNDFIKSLTLVSQKMCVVVYPQEGNS 500
>sp|Q9UHI5|LAT2_HUMAN Large neutral amino acids transporter small subunit 2 (L-type amino
acid transporter 2) (hLAT2)
Length = 535
Score = 221 bits (564), Expect = 2e-57
Identities = 113/267 (42%), Positives = 168/267 (62%), Gaps = 1/267 (0%)
Frame = +1
Query: 22 DIGQLTMGFYNGLFAYCGWNYLNCMMEEMKNPVKDLPRAVLISCIIVTVVYMLANVSYFT 201
DIG + + F G FAY GWN+LN + EE+ +P K+LPRA+ IS +VT VY+ ANV+Y T
Sbjct: 230 DIGLVALAFLQGSFAYGGWNFLNYVTEELVDPYKNLPRAIFISIPLVTFVYVFANVAYVT 289
Query: 202 ILSPIEIKLTNAVAVRLGLENFSVMWWIIPMFVSMSTFGGVNGIIMTTSRMFLVAAQSDQ 381
+SP E+ +NAVAV G + VM WI+P+ V++STFGGVNG + T+SR+F A+
Sbjct: 290 AMSPQELLASNAVAVTFGEKLLGVMAWIMPISVALSTFGGVNGSLFTSSRLFFAGAREGH 349
Query: 382 MPASLAMISTRLSTPIPSVVFVSLISFVYLIYPDMYVLMNYVGFVTWLTFAIAIVALLYF 561
+P+ LAMI + TPIP+++F + + + L+ DMY L+NYVGF+ +L + + + +
Sbjct: 350 LPSVLAMIHVKRCTPIPALLFTCISTLLMLVTSDMYTLINYVGFINYLFYGVTVAGQIVL 409
Query: 562 RFAPKYAGLERPFTVHLIFPIVYLLISXXXXXXXXVGGFYESIMGTIIMLTAVPVYFIGI 741
R+ K + RP ++L+FPI+YLL +G IMLT VPVYF+G+
Sbjct: 410 RW--KKPDIPRPIKINLLFPIIYLLFWAFLLVFSLWSEPVVCGIGLAIMLTGVPVYFLGV 467
Query: 742 VWK-KPKLFNRKLNDFTIFVQKLFIVV 819
W+ KPK F+ + T+ QK+ +VV
Sbjct: 468 YWQHKPKCFSDFIELLTLVSQKMCVVV 494
>sp|Q9Z127|LAT1_MOUSE Large neutral amino acids transporter small subunit 1 (L-type amino
acid transporter 1) (4F2 light chain) (4F2 LC) (4F2LC)
Length = 512
Score = 219 bits (557), Expect = 1e-56
Identities = 113/273 (41%), Positives = 170/273 (62%), Gaps = 1/273 (0%)
Frame = +1
Query: 4 FTDTSGDIGQLTMGFYNGLFAYCGWNYLNCMMEEMKNPVKDLPRAVLISCIIVTVVYMLA 183
F T+ D+G + + Y+GLFAY GWNYLN + EEM NP ++LP A++IS IVT+VY+L
Sbjct: 238 FEGTNLDVGNIVLALYSGLFAYGGWNYLNFVTEEMINPYRNLPLAIIISLPIVTLVYVLT 297
Query: 184 NVSYFTILSPIEIKLTNAVAVRLGLENFSVMWWIIPMFVSMSTFGGVNGIIMTTSRMFLV 363
N++YFT LS ++ + AVAV G + VM WIIP+FV +S FG VNG + T+SR+F V
Sbjct: 298 NLAYFTTLSTNQMLTSEAVAVDFGNYHLGVMSWIIPVFVGLSCFGSVNGSLFTSSRLFFV 357
Query: 364 AAQSDQMPASLAMISTRLSTPIPSVVFVSLISFVYLIYPDMYVLMNYVGFVTWLTFAIAI 543
++ +P+ L+MI +L TP+PS+VF +++ +Y D++ ++N+ F WL A+AI
Sbjct: 358 GSREGHLPSVLSMIHPQLLTPVPSLVFTCIMTLMYAFSRDIFSIINFFSFFNWLCVALAI 417
Query: 544 VALLYFRFAPKYAGLERPFTVHLIFPIVYLLISXXXXXXXXVGGFYESIMGTIIMLTAVP 723
+ +++ RF K LERP V+L P+ ++L E +G I+L+ +P
Sbjct: 418 IGMMWLRF--KKPELERPIKVNLALPVFFILACLFLIAVSFWKTPMECGIGFAIILSGLP 475
Query: 724 VYFIGIVWK-KPKLFNRKLNDFTIFVQKLFIVV 819
VYF G+ WK KPK + + T+ QKL VV
Sbjct: 476 VYFFGVWWKNKPKWILQAIFSVTVLCQKLMQVV 508
>sp|Q63016|LAT1_RAT Large neutral amino acids transporter small subunit 1 (L-type amino
acid transporter 1) (4F2 light chain) (4F2 LC) (4F2LC)
(Integral membrane protein E16) (TA1 protein)
Length = 512
Score = 218 bits (555), Expect = 2e-56
Identities = 113/273 (41%), Positives = 170/273 (62%), Gaps = 1/273 (0%)
Frame = +1
Query: 4 FTDTSGDIGQLTMGFYNGLFAYCGWNYLNCMMEEMKNPVKDLPRAVLISCIIVTVVYMLA 183
F T+ D+G + + Y+GLFAY GWNYLN + EEM NP ++LP A++IS IVT+VY+L
Sbjct: 238 FEGTNLDVGNIVLALYSGLFAYGGWNYLNFVTEEMINPYRNLPLAIIISLPIVTLVYVLT 297
Query: 184 NVSYFTILSPIEIKLTNAVAVRLGLENFSVMWWIIPMFVSMSTFGGVNGIIMTTSRMFLV 363
N++YFT LS ++ + AVAV G + VM WIIP+FV +S FG VNG + T+SR+F V
Sbjct: 298 NLAYFTTLSTNQMLTSEAVAVDFGNYHLGVMSWIIPVFVGLSCFGSVNGSLFTSSRLFFV 357
Query: 364 AAQSDQMPASLAMISTRLSTPIPSVVFVSLISFVYLIYPDMYVLMNYVGFVTWLTFAIAI 543
++ +P+ L+MI +L TP+PS+VF +++ +Y D++ ++N+ F WL A+AI
Sbjct: 358 GSREGHLPSILSMIHPQLLTPVPSLVFTCVMTLMYAFSRDIFSIINFFSFFNWLCVALAI 417
Query: 544 VALLYFRFAPKYAGLERPFTVHLIFPIVYLLISXXXXXXXXVGGFYESIMGTIIMLTAVP 723
+ +++ RF K LERP V+L P+ ++L E +G I+L+ +P
Sbjct: 418 IGMMWLRF--KKPELERPIKVNLALPVFFILACLFLIAVSFWKTPLECGIGFAIILSGLP 475
Query: 724 VYFIGIVWK-KPKLFNRKLNDFTIFVQKLFIVV 819
VYF G+ WK KPK + + T+ QKL VV
Sbjct: 476 VYFFGVWWKNKPKWILQVIFSVTVLCQKLMQVV 508
>sp|Q01650|LAT1_HUMAN Large neutral amino acids transporter small subunit 1 (L-type amino
acid transporter 1) (4F2 light chain) (4F2 LC) (4F2LC)
(CD98 light chain) (Integral membrane protein E16)
(hLAT1)
Length = 507
Score = 213 bits (542), Expect = 5e-55
Identities = 111/273 (40%), Positives = 168/273 (61%), Gaps = 1/273 (0%)
Frame = +1
Query: 4 FTDTSGDIGQLTMGFYNGLFAYCGWNYLNCMMEEMKNPVKDLPRAVLISCIIVTVVYMLA 183
F T D+G + + Y+GLFAY GWNYLN + EEM NP ++LP A++IS IVT+VY+L
Sbjct: 233 FEGTKLDVGNIVLALYSGLFAYGGWNYLNFVTEEMINPYRNLPLAIIISLPIVTLVYVLT 292
Query: 184 NVSYFTILSPIEIKLTNAVAVRLGLENFSVMWWIIPMFVSMSTFGGVNGIIMTTSRMFLV 363
N++YFT LS ++ + AVAV G + VM WIIP+FV +S FG VNG + T+SR+F V
Sbjct: 293 NLAYFTTLSTEQMLSSEAVAVDFGNYHLGVMSWIIPVFVGLSCFGSVNGSLFTSSRLFFV 352
Query: 364 AAQSDQMPASLAMISTRLSTPIPSVVFVSLISFVYLIYPDMYVLMNYVGFVTWLTFAIAI 543
++ +P+ L+MI +L TP+PS+VF +++ +Y D++ ++N+ F WL A+AI
Sbjct: 353 GSREGHLPSILSMIHPQLLTPVPSLVFTCVMTLLYAFSKDIFSVINFFSFFNWLCVALAI 412
Query: 544 VALLYFRFAPKYAGLERPFTVHLIFPIVYLLISXXXXXXXXVGGFYESIMGTIIMLTAVP 723
+ +++ R + LERP V+L P+ ++L E +G I+L+ +P
Sbjct: 413 IGMIWLRH--RKPELERPIKVNLALPVFFILACLFLIAVSFWKTPVECGIGFTIILSGLP 470
Query: 724 VYFIGIVWK-KPKLFNRKLNDFTIFVQKLFIVV 819
VYF G+ WK KPK + + T+ QKL VV
Sbjct: 471 VYFFGVWWKNKPKWLLQGIFSTTVLCQKLMQVV 503
>sp|P63116|AAA1_RAT Asc-type amino acid transporter 1 (Asc-1) (D-serine transporter)
sp|P63115|AAA1_MOUSE Asc-type amino acid transporter 1 (Asc-1) (D-serine transporter)
Length = 530
Score = 202 bits (513), Expect = 1e-51
Identities = 105/269 (39%), Positives = 161/269 (59%), Gaps = 1/269 (0%)
Frame = +1
Query: 25 IGQLTMGFYNGLFAYCGWNYLNCMMEEMKNPVKDLPRAVLISCIIVTVVYMLANVSYFTI 204
+G L + F G FA+ GWN+LN + EE+ +P K+LPRA+ IS +VT VY NV+YFT
Sbjct: 237 VGHLALAFLQGSFAFSGWNFLNYVTEELVDPRKNLPRAIFISIPLVTFVYTFTNVAYFTA 296
Query: 205 LSPIEIKLTNAVAVRLGLENFSVMWWIIPMFVSMSTFGGVNGIIMTTSRMFLVAAQSDQM 384
+SP E+ +NAVAV G + W++P+ V++STFGG+NG + T+SR+ A+ +
Sbjct: 297 MSPQELLSSNAVAVTFGEKLLGYFSWVMPVSVALSTFGGINGYLFTSSRLCFSGAREGHL 356
Query: 385 PASLAMISTRLSTPIPSVVFVSLISFVYLIYPDMYVLMNYVGFVTWLTFAIAIVALLYFR 564
P+ LAMI R TPIP+++ + V ++ D Y L+NYV F+ +L + + I+ LL R
Sbjct: 357 PSFLAMIHVRRCTPIPALLVCCGATAVIMLVGDTYTLINYVSFINYLCYGVTILGLLVLR 416
Query: 565 FAPKYAGLERPFTVHLIFPIVYLLISXXXXXXXXVGGFYESIMGTIIMLTAVPVYFIGIV 744
+ + L RP V+L+ P+VYL+ + +G II+LT VP++F+G+
Sbjct: 417 W--RRPALHRPIKVNLLVPVVYLVFWAFLLVFSFISEPMVCGVGIIIILTGVPIFFLGVF 474
Query: 745 WK-KPKLFNRKLNDFTIFVQKLFIVVATQ 828
W+ KPK +R T + Q+L VV Q
Sbjct: 475 WRSKPKCVHRFTESMTRWGQELCFVVYPQ 503
>sp|Q9NS82|AAA1_HUMAN Asc-type amino acid transporter 1 (Asc-1)
Length = 523
Score = 198 bits (503), Expect = 2e-50
Identities = 105/274 (38%), Positives = 161/274 (58%), Gaps = 3/274 (1%)
Frame = +1
Query: 25 IGQLTMGFYNGLFAYCGWNYLNCMMEEMKNPVKDLPRAVLISCIIVTVVYMLANVSYFTI 204
+G L + F G FA+ GWN+LN + EEM + K+LPRA+ IS +VT VY N++YFT
Sbjct: 231 VGHLALAFLQGSFAFSGWNFLNYVTEEMVDARKNLPRAIFISIPLVTFVYTFTNIAYFTA 290
Query: 205 LSPIEIKLTNAVAVRLGLENFSVMWWIIPMFVSMSTFGGVNGIIMTTSRMFLVAAQSDQM 384
+SP E+ +NAVAV G + W++P+ V++STFGG+NG + T SR+ A+ +
Sbjct: 291 MSPQELLSSNAVAVTFGEKLLGYFSWVMPVSVALSTFGGINGYLFTYSRLCFSGAREGHL 350
Query: 385 PASLAMISTRLSTPIPSVVFVSLISFVYLIYPDMYVLMNYVGFVTWLTFAIAIVALLYFR 564
P+ LAMI R TPIP+++ + V ++ D Y L+NYV F+ +L + + I+ LL R
Sbjct: 351 PSLLAMIHVRHCTPIPALLVCCGATAVIMLVGDTYTLINYVSFINYLCYGVTILGLLLLR 410
Query: 565 FAPKYAGLERPFTVHLIFPIVYLLISXXXXXXXXVGGFYESIMGTIIMLTAVPVYFIGIV 744
+ + L RP V+L+ P+ YL+ + +G II+LT VP++F+G+
Sbjct: 411 W--RRPALHRPIKVNLLIPVAYLVFWAFLLVFSFISEPMVCGVGVIIILTGVPIFFLGVF 468
Query: 745 WK-KPKLFNRKLNDFTIFVQKLFIVVATQ--PDE 837
W+ KPK +R T + Q+L VV Q P+E
Sbjct: 469 WRSKPKCVHRLTESMTHWGQELCFVVYPQDAPEE 502
>sp|Q9UPY5|XCT_HUMAN Cystine/glutamate transporter (Amino acid transport system xc-) (xCT)
(Calcium channel blocker resistance protein CCBR1)
Length = 501
Score = 184 bits (466), Expect = 3e-46
Identities = 101/282 (35%), Positives = 160/282 (56%), Gaps = 4/282 (1%)
Frame = +1
Query: 4 FTDTSGDIGQLTMGFYNGLFAYCGWNYLNCMMEEMKNPVKDLPRAVLISCIIVTVVYMLA 183
F+ I +L + FY G++AY GW YLN + EE++NP K +P A+ IS IVT+ Y+L
Sbjct: 225 FSGRDSSITRLPLAFYYGMYAYAGWFYLNFVTEEVENPEKTIPLAICISMAIVTIGYVLT 284
Query: 184 NVSYFTILSPIEIKLTNAVAVRLG---LENFSVMWWIIPMFVSMSTFGGVNGIIMTTSRM 354
NV+YFT ++ E+ L+NAVAV L NFS+ +P+FV++S FG +NG + SR+
Sbjct: 285 NVAYFTTINAEELLLSNAVAVTFSERLLGNFSLA---VPIFVALSCFGSMNGGVFAVSRL 341
Query: 355 FLVAAQSDQMPASLAMISTRLSTPIPSVVFVSLISFVYLIYPDMYVLMNYVGFVTWLTFA 534
F VA++ +P L+MI R TP+P+V+ + ++ + L D+ L+N++ F WL
Sbjct: 342 FYVASREGHLPEILSMIHVRKHTPLPAVIVLHPLTMIMLFSGDLDSLLNFLSFARWLFIG 401
Query: 535 IAIVALLYFRFAPKYAGLERPFTVHLIFPIVYLLISXXXXXXXXVGGFYESIMGTIIMLT 714
+A+ L+Y R+ K + RPF V L P ++ + + +G +I LT
Sbjct: 402 LAVAGLIYLRY--KCPDMHRPFKVPLFIPALFSFTCLFMVALSLYSDPFSTGIGFVITLT 459
Query: 715 AVPVYFIGIVW-KKPKLFNRKLNDFTIFVQKLFIVVATQPDE 837
VP Y++ I+W KKP+ F T + L I++ P+E
Sbjct: 460 GVPAYYLFIIWDKKPRWFRIMSEKIT---RTLQIILEVVPEE 498
>sp|Q9UM01|YLA1_HUMAN Y+L amino acid transporter 1 (y(+)L-type amino acid transporter 1)
(y+LAT-1) (Y+LAT1) (Monocyte amino acid permease 2)
(MOP-2)
Length = 511
Score = 183 bits (465), Expect = 5e-46
Identities = 97/280 (34%), Positives = 160/280 (57%), Gaps = 3/280 (1%)
Frame = +1
Query: 4 FTDTSGDIGQLTMGFYNGLFAYCGWNYLNCMMEEMKNPVKDLPRAVLISCIIVTVVYMLA 183
F +S +G + + Y+ LF+Y GW+ LN + EE+KNP ++LP ++ IS IVT++Y+L
Sbjct: 218 FEGSSFAVGDIALALYSALFSYSGWDTLNYVTEEIKNPERNLPLSIGISMPIVTIIYILT 277
Query: 184 NVSYFTILSPIEIKLTNAVAVRLGLENFSVMWWIIPMFVSMSTFGGVNGIIMTTSRMFLV 363
NV+Y+T+L +I ++AVAV + F + WIIP+ V++S FGG+N I+ SR+F V
Sbjct: 278 NVAYYTVLDMRDILASDAVAVTFADQIFGIFNWIIPLSVALSCFGGLNASIVAASRLFFV 337
Query: 364 AAQSDQMPASLAMISTRLSTPIPSVVFVSLISFVYLIYPDMYVLMNYVGFVTWLTFAIAI 543
++ +P ++ MI TP+PS++F +++ +YL D++ L+NY F W ++I
Sbjct: 338 GSREGHLPDAICMIHVERFTPVPSLLFNGIMALIYLCVEDIFQLINYYSFSYWFFVGLSI 397
Query: 544 VALLYFRFAPKYAGLERPFTVHLIFPIVYLLISXXXXXXXXVGGFYESIMGTIIMLTAVP 723
V LY R+ K RP + + FPIV+ L + S++G I L+ +P
Sbjct: 398 VGQLYLRW--KEPDRPRPLKLSVFFPIVFCLCTIFLVAVPLYSDTINSLIGIAIALSGLP 455
Query: 724 VYFIGI---VWKKPKLFNRKLNDFTIFVQKLFIVVATQPD 834
YF+ I K+P R + T ++Q L + VA + D
Sbjct: 456 FYFLIIRVPEHKRPLYLRRIVGSATRYLQVLCMSVAAEMD 495
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,136,293
Number of Sequences: 369166
Number of extensions: 1857221
Number of successful extensions: 4689
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4663
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)