Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_03023
(549 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q10010|YSV4_CAEEL Hypothetical protein T19C3.4 in chromo... 147 2e-35
sp|Q5RE33|DP1_PONPY Polyposis locus protein 1 homolog 87 3e-17
sp|Q60870|DP1_MOUSE Polyposis locus protein 1 homolog (TB2 ... 86 8e-17
sp|Q51VY4|YOP1_MAGGR Protein YOP1 84 2e-16
sp|Q8LEM6|A22H_ARATH HVA22-like protein h (AtHVA22h) 83 5e-16
sp|Q8GXE9|A22J_ARATH HVA22-like protein j (AtHVA22j) 81 1e-15
sp|Q4P0H0|YOP1_USTMA Protein YOP1 81 2e-15
sp|Q8LE10|A22I_ARATH HVA22-like protein i (AtHVA22i) 79 7e-15
sp|Q9LR09|A22G_ARATH Putative HVA22-like protein g (AtHVA22g) 78 2e-14
sp|Q871R7|YOP1_NEUCR Protein yop-1 74 2e-13
>sp|Q10010|YSV4_CAEEL Hypothetical protein T19C3.4 in chromosome III
Length = 229
Score = 147 bits (371), Expect = 2e-35
Identities = 66/157 (42%), Positives = 108/157 (68%), Gaps = 4/157 (2%)
Frame = +2
Query: 56 LTALLSRCIILVFAILHPAYKSYKSLRQKNQKDILTWMMYWIVFAIFTAVETVTDVLLC- 232
++ LSR +I+ L+PAY+SYK++R K+ ++ + WMMYWIVFAI++ +E + D++L
Sbjct: 1 MSETLSRLLIITAGTLYPAYRSYKAVRTKDTREYVKWMMYWIVFAIYSFLENLLDLVLAF 60
Query: 233 WIPFYYELKILFVLWMVLPVTKGYSIIFRRLIHPELSKREPEIDQIIEKASEKGYNAILE 412
W PFY++LKI+F+ W++ P TKG SI++R+ +HP L++ E +ID ++E A + YN ++
Sbjct: 61 WFPFYFQLKIVFIFWLLSPWTKGASILYRKWVHPTLNRHEKDIDALLESAKSESYNQLMR 120
Query: 413 FGAKGINFAASTVLTTAVKGQQLLAS---RSLSLGDL 514
G+K + +A V AV+GQQ L + RS S D+
Sbjct: 121 IGSKSLVYAKDVVAEAAVRGQQQLVNQLQRSYSANDV 157
>sp|Q5RE33|DP1_PONPY Polyposis locus protein 1 homolog
Length = 189
Score = 86.7 bits (213), Expect = 3e-17
Identities = 34/97 (35%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Frame = +2
Query: 104 HPAYKSYKSLRQKNQKDILTWMMYWIVFAIFTAVETVTDVLLCWIPFYYELKILFVLWMV 283
+PAY S K++ N++D W+ YW+V+ +F+ E +D+ L W PFYY LK F+LW +
Sbjct: 66 YPAYISIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDIFLSWFPFYYMLKCGFLLWCM 125
Query: 284 LP-VTKGYSIIFRRLIHPELSKREPEIDQIIEKASEK 391
P + G ++++R+I P K E ++D +++ +K
Sbjct: 126 APSPSNGAELLYKRIIRPFFLKHESQVDSVVKDLKDK 162
>sp|Q60870|DP1_MOUSE Polyposis locus protein 1 homolog (TB2 protein homolog) (GP106)
Length = 185
Score = 85.5 bits (210), Expect = 8e-17
Identities = 34/97 (35%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Frame = +2
Query: 104 HPAYKSYKSLRQKNQKDILTWMMYWIVFAIFTAVETVTDVLLCWIPFYYELKILFVLWMV 283
+PAY S K++ N+ D W+ YW+V+ +F+ E +D+ L W+PFYY LK F+LW +
Sbjct: 62 YPAYISMKAIESPNKDDDTQWLTYWVVYGVFSIAEFFSDLFLSWLPFYYMLKCGFLLWCM 121
Query: 284 LP-VTKGYSIIFRRLIHPELSKREPEIDQIIEKASEK 391
P G +++RR+I P + E ++D +++ +K
Sbjct: 122 APSPANGAEMLYRRIIRPIFLRHESQVDSVVKDVKDK 158
>sp|Q51VY4|YOP1_MAGGR Protein YOP1
Length = 170
Score = 84.0 bits (206), Expect = 2e-16
Identities = 38/80 (47%), Positives = 52/80 (65%)
Frame = +2
Query: 107 PAYKSYKSLRQKNQKDILTWMMYWIVFAIFTAVETVTDVLLCWIPFYYELKILFVLWMVL 286
PAY S +L N++D W+ YW+VFA+FT VE++ V+ W PFYY K +F+LW+ L
Sbjct: 69 PAYYSLDALFSANKEDDTQWLTYWVVFAMFTVVESLVSVVY-WFPFYYMFKFVFLLWLSL 127
Query: 287 PVTKGYSIIFRRLIHPELSK 346
P KG IIFR + P LS+
Sbjct: 128 PAFKGADIIFRSFLAPTLSR 147
>sp|Q8LEM6|A22H_ARATH HVA22-like protein h (AtHVA22h)
Length = 315
Score = 82.8 bits (203), Expect = 5e-16
Identities = 37/136 (27%), Positives = 74/136 (54%), Gaps = 2/136 (1%)
Frame = +2
Query: 53 MLTALLSRCIILVFAILHPAYKSYKSLRQKN--QKDILTWMMYWIVFAIFTAVETVTDVL 226
M+ + L+R +++VF +PAY+ YK++ + + + W YWI+ A T E V D L
Sbjct: 1 MIGSFLTRGLVMVFGYAYPAYECYKAVEKNKPEMQQLRFWCQYWILVAALTIFERVGDAL 60
Query: 227 LCWIPFYYELKILFVLWMVLPVTKGYSIIFRRLIHPELSKREPEIDQIIEKASEKGYNAI 406
W+P Y E K+ F +++ P T+G + ++ P ++K E EID+ + + K +
Sbjct: 61 ASWVPLYCEAKLAFFIYLWFPKTRGTTYVYDSFFQPYVAKHENEIDRSLIELRTKAGDLA 120
Query: 407 LEFGAKGINFAASTVL 454
+ + K +++ + ++
Sbjct: 121 VIYCRKAVSYGQTRIV 136
>sp|Q8GXE9|A22J_ARATH HVA22-like protein j (AtHVA22j)
Length = 258
Score = 81.3 bits (199), Expect = 1e-15
Identities = 42/152 (27%), Positives = 86/152 (56%), Gaps = 3/152 (1%)
Frame = +2
Query: 53 MLTALLSRCIILVFAILHPAYKSYKSLRQKNQKDILT---WMMYWIVFAIFTAVETVTDV 223
ML + R ++L+ +PA++ +K++ +KN+ DI W YWI+ A+ ++ E V D
Sbjct: 1 MLGDFIIRLLVLILGYTYPAFECFKTV-EKNKVDIEELRFWCQYWILLALISSFERVGDF 59
Query: 224 LLCWIPFYYELKILFVLWMVLPVTKGYSIIFRRLIHPELSKREPEIDQIIEKASEKGYNA 403
+ W+P Y E+K++F +++ P TKG ++ L+ P +++ E EID+ I + + ++
Sbjct: 60 FISWLPLYGEMKVVFFVYLWYPKTKGTRHVYETLLKPYMAQHETEIDRKIMELRARAWDF 119
Query: 404 ILEFGAKGINFAASTVLTTAVKGQQLLASRSL 499
+ + N A +T ++G Q + ++S+
Sbjct: 120 FIFY----FNNFAQAGQSTLIQGFQYVLAQSV 147
>sp|Q4P0H0|YOP1_USTMA Protein YOP1
Length = 172
Score = 80.9 bits (198), Expect = 2e-15
Identities = 32/87 (36%), Positives = 56/87 (64%)
Frame = +2
Query: 107 PAYKSYKSLRQKNQKDILTWMMYWIVFAIFTAVETVTDVLLCWIPFYYELKILFVLWMVL 286
PAY S K+L +D + W+ YW+VF +FT +ET +++L +IP+YY +K L ++W++L
Sbjct: 73 PAYFSLKALESPQPQDDIQWLTYWVVFGLFTFLETFINIVLYYIPWYYTIKTLAIVWLML 132
Query: 287 PVTKGYSIIFRRLIHPELSKREPEIDQ 367
P T+G +++ R+I P + + Q
Sbjct: 133 PQTQGAKMVYSRIIRPVFLTTQKTVHQ 159
>sp|Q8LE10|A22I_ARATH HVA22-like protein i (AtHVA22i)
Length = 296
Score = 79.0 bits (193), Expect = 7e-15
Identities = 39/123 (31%), Positives = 70/123 (56%), Gaps = 4/123 (3%)
Frame = +2
Query: 53 MLTALLSRCIILVFAILHPAYKSYKSLRQKNQKDILT---WMMYWIVFAIFTAVETVTDV 223
M+ + L+R +++V +PAY+ YK++ +KN+ +I W YWI+ A T E V D
Sbjct: 1 MIGSFLTRGLVMVLGYAYPAYECYKTV-EKNRPEIEQLRFWCQYWILVACLTVFERVGDA 59
Query: 224 LLCWIPFYYELKILFVLWMVLPVTKGYSIIFRRLIHPELSKREPEID-QIIEKASEKGYN 400
+ W+P Y E K+ F +++ P T+G + ++ P LS+ E +ID ++E + G
Sbjct: 60 FVSWVPMYSEAKLAFFIYLWYPKTRGTTYVYESFFRPYLSQHENDIDHSLLELRTRAGDM 119
Query: 401 AIL 409
A++
Sbjct: 120 AVI 122
>sp|Q9LR09|A22G_ARATH Putative HVA22-like protein g (AtHVA22g)
Length = 166
Score = 77.8 bits (190), Expect = 2e-14
Identities = 36/118 (30%), Positives = 63/118 (53%), Gaps = 2/118 (1%)
Frame = +2
Query: 86 LVFAILHPAYKSYKS--LRQKNQKDILTWMMYWIVFAIFTAVETVTDVLLCWIPFYYELK 259
+VF +PAY+ +K+ L + + + W YWI+ A T E + D L+ W+P Y E K
Sbjct: 1 MVFGYAYPAYECFKTVELNKPEIQQLQFWCQYWIIVAALTIFERIGDALVSWLPMYSEAK 60
Query: 260 ILFVLWMVLPVTKGYSIIFRRLIHPELSKREPEIDQIIEKASEKGYNAILEFGAKGIN 433
+ F +++ P TKG + ++ P ++K E EID+ + K + + + + K IN
Sbjct: 61 LAFFIYLWFPKTKGTTYVYDSFFRPYIAKHENEIDRNLVKVKTRAKDMAMIYLQKAIN 118
>sp|Q871R7|YOP1_NEUCR Protein yop-1
Length = 168
Score = 74.3 bits (181), Expect = 2e-13
Identities = 31/80 (38%), Positives = 49/80 (61%)
Frame = +2
Query: 107 PAYKSYKSLRQKNQKDILTWMMYWIVFAIFTAVETVTDVLLCWIPFYYELKILFVLWMVL 286
P Y S +L +++D W+ YW+VF++FT +E++ V+ W PFY+ K +F+LW+ L
Sbjct: 69 PGYYSLNALFTASKQDDTQWLTYWVVFSLFTVIESLISVVY-WFPFYFTFKFVFLLWLSL 127
Query: 287 PVTKGYSIIFRRLIHPELSK 346
P KG IFR + P L +
Sbjct: 128 PTFKGAETIFRSFLAPTLGR 147
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,009,894
Number of Sequences: 369166
Number of extensions: 999804
Number of successful extensions: 3185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3176
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3833118120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)