Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_03020
(348 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P16113|PYP_ECTHA Photoactive yellow protein (PYP) 31 1.0
sp|Q04705|YME7_YEAST Hypothetical 41.4 kDa protein in GAL80... 30 1.3
>sp|P16113|PYP_ECTHA Photoactive yellow protein (PYP)
Length = 125
Score = 30.8 bits (68), Expect = 1.0
Identities = 20/46 (43%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 116 ENLL--LDDTQLEDGILLGMINMKSDGFFLQENILQEDIFNRLDKE 247
EN L +DD QL DG+ G I + DG LQ N + DI R K+
Sbjct: 12 ENTLAKMDDGQL-DGLAFGAIQLDGDGNILQYNAAEGDITGRDPKQ 56
>sp|Q04705|YME7_YEAST Hypothetical 41.4 kDa protein in GAL80-PRP39 intergenic region
Length = 352
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = -1
Query: 342 YFNNIIRLLI*NCMFNYQLLRLTDNYIINEDYSLSKRLKMSSCSIFSC 199
Y N I RL+ NC+FN++ ++ + ++ ++ SK L S I C
Sbjct: 109 YMNGISRLI--NCLFNFKKYQIFELIVLTDEKKFSKWLFFSYFEISGC 154
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,442,146
Number of Sequences: 369166
Number of extensions: 532967
Number of successful extensions: 1227
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 68,354,980
effective HSP length: 83
effective length of database: 53,021,975
effective search space used: 1696703200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)