Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_03008
(456 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9V4M2|DPLD_DROME Dappled protein 34 0.17
sp|P39000|YES6_YEAST Hypothetical 56.6 kDa protein in RAD51... 34 0.17
sp|P41423|Y013_NPVAC Hypothetical 38.7 kDa protein in PK1-L... 31 1.1
sp|Q07243|MTF1_MOUSE Metal-regulatory transcription factor ... 31 1.1
sp|Q14872|MTF1_HUMAN Metal-regulatory transcription factor ... 31 1.5
sp|Q9P7E9|YDZF_SCHPO Putative dipeptidyl aminopeptidase C14... 30 1.9
sp|P43094|CARP5_CANAL Candidapepsin-5 precursor (Aspartate ... 30 2.5
sp|Q9C040|TRIM2_HUMAN Tripartite motif protein 2 (RING fing... 30 3.3
sp|Q9ESN6|TRIM2_MOUSE Tripartite motif protein 2 (Neural ac... 30 3.3
sp|Q10064|YAMB_SCHPO Hypothetical protein C1F5.11c in chrom... 29 4.3
>sp|Q9V4M2|DPLD_DROME Dappled protein
Length = 832
Score = 33.9 bits (76), Expect = 0.17
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 6/99 (6%)
Frame = +3
Query: 84 VWIADRENRKVIGFSYDGNIKF-----SISLGKSSLPVYGIEFNPFNKLIYGITTNGENR 248
V ++DR N +V F+ DG++KF + G+ LP GI + N++I + +R
Sbjct: 564 VLVSDRRNNRVQVFNPDGSLKFKFGRKGVGNGEFDLPA-GICVDVDNRII--VVDKDNHR 620
Query: 249 GSSFTFNTTTLSKMEPWNNNY-EFRSPHDLCLAENGNIV 362
FT + L K + Y +F+ P D+ + IV
Sbjct: 621 VQIFTASGVFLLKFGSYGKEYGQFQYPWDVAVNSRRQIV 659
>sp|P39000|YES6_YEAST Hypothetical 56.6 kDa protein in RAD51-UBP9 intergenic region
Length = 512
Score = 33.9 bits (76), Expect = 0.17
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 8/132 (6%)
Frame = +3
Query: 45 IEEDPSGDVSKNV-----VWIADRENRKVI-GFSYDGNIKFS--ISLGKSSLPVYGIEFN 200
+E+D S + + + IA + +++ G S DGN +F S + F+
Sbjct: 109 VEDDASSSLKEKSQGSCEIEIASEISSEILNGTSADGNSEFHDFAEPPPSQNESVALSFS 168
Query: 201 PFNKLIYGITTNGENRGSSFTFNTTTLSKMEPWNNNYEFRSPHDLCLAENGNIVFVAELH 380
N L + N GSS N +T S P + + +F + LCL N V +E H
Sbjct: 169 QSNDLDF--LNNPSGSGSSNDINRSTSSISLPRHVSLDFNVYNSLCLT---NEVTASESH 223
Query: 381 LKTVIKFHLGRR 416
V KFHLG++
Sbjct: 224 --NVAKFHLGKK 233
>sp|P41423|Y013_NPVAC Hypothetical 38.7 kDa protein in PK1-LEF1 intergenic region
Length = 327
Score = 31.2 bits (69), Expect = 1.1
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Frame = -2
Query: 143 NISIVAE----SDDFPVFSISNPNHIFTHITRWIFFYCNTMNYKHRF 15
N +I AE +DD+ + I+ ++HI +W F CNT ++K+R+
Sbjct: 17 NDAIAAEDRFNADDYKKYHINAQQ--WSHIVKWDSFKCNTHSFKYRY 61
>sp|Q07243|MTF1_MOUSE Metal-regulatory transcription factor 1 (Transcription factor
MTF-1) (MRE-binding transcription factor)
Length = 675
Score = 31.2 bits (69), Expect = 1.1
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Frame = +3
Query: 210 KLIYGITTNGENRGSSFTFNTTTLSKMEPWNNNYE----FRSPHDLCLAENGNIVFVAEL 377
+L G T N E++G S F TTLS + + FR HD C F A
Sbjct: 221 RLHTGKTFNCESQGCSKYF--TTLSDLRKHIRTHTGEKPFRCDHDGC-----GKAFAASH 273
Query: 378 HLKTVIKFHLGRR 416
HLKT ++ H G R
Sbjct: 274 HLKTHVRTHTGER 286
>sp|Q14872|MTF1_HUMAN Metal-regulatory transcription factor 1 (Transcription factor
MTF-1) (MRE-binding transcription factor)
Length = 753
Score = 30.8 bits (68), Expect = 1.5
Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Frame = +3
Query: 210 KLIYGITTNGENRGSSFTFNTTTLSKMEPWNNNYE----FRSPHDLCLAENGNIVFVAEL 377
+L G T N E+ G S F TTLS + + FR HD C F A
Sbjct: 222 RLHTGKTFNCESEGCSKYF--TTLSDLRKHIRTHTGEKPFRCDHDGC-----GKAFAASH 274
Query: 378 HLKTVIKFHLGRR 416
HLKT ++ H G R
Sbjct: 275 HLKTHVRTHTGER 287
>sp|Q9P7E9|YDZF_SCHPO Putative dipeptidyl aminopeptidase C14C4.15c
Length = 853
Score = 30.4 bits (67), Expect = 1.9
Identities = 21/82 (25%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Frame = +3
Query: 39 ITIEEDPSGDVSKNVVWIADRE---NRKVIGFSYDGNIKFSISLGKSSLPVYGIEFNPFN 209
IT + D G + N W+ + E + K + +S DGN +S+ S +PV+ + F +
Sbjct: 260 ITDQSDLDGLFNGNSDWVYEEEILQSSKAVWWSPDGNCLSYLSIDDSKVPVHVLPFEQLD 319
Query: 210 KLIYGITTNGENRGSSFTFNTT 275
+ +NR ++F +T
Sbjct: 320 SKV-----EDQNRVNNFFHYST 336
>sp|P43094|CARP5_CANAL Candidapepsin-5 precursor (Aspartate protease 5) (ACP 5) (Secreted
aspartic protease 5)
Length = 418
Score = 30.0 bits (66), Expect = 2.5
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +3
Query: 66 DVSKNVVWIADRENRKVIGFSYDGNIKFSISLGKSSLPVYGIEFNPFNKLIYGITTNGEN 245
D + N V++AD + I F + N+K S+ + + Y PF K I + +N
Sbjct: 321 DSAGNKVYVADCKTSGTIDFQFGNNLKISVPVSEFLFQTYYTSGKPFPKCEVRIRESEDN 380
>sp|Q9C040|TRIM2_HUMAN Tripartite motif protein 2 (RING finger protein 86)
Length = 744
Score = 29.6 bits (65), Expect = 3.3
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Frame = +3
Query: 57 PSGDVSKNVVWIADRENRKVIGFSYDGNIKFSISLGKSSLPVYGIEFNPFNKLIYGITTN 236
PSGD+ IAD +N+ V FS DG K I GK P G+ + +I + N
Sbjct: 543 PSGDII-----IADYDNKWVSIFSSDGKFKTKIGSGKLMGP-KGVSVDRNGHII--VVDN 594
Query: 237 GENRGSSFTFNTTTLSKM-EPWNNNYEFRSPHDLCLAENGNIVFVAELHLKTVIKFH 404
F N +++ N + +F PH + N I+ + + H +V F+
Sbjct: 595 KACCVFIFQPNGKIVTRFGSRGNGDRQFAGPHFAAVNSNNEII-ITDFHNHSVKVFN 650
>sp|Q9ESN6|TRIM2_MOUSE Tripartite motif protein 2 (Neural activity-related RING finger
protein)
Length = 744
Score = 29.6 bits (65), Expect = 3.3
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 1/117 (0%)
Frame = +3
Query: 57 PSGDVSKNVVWIADRENRKVIGFSYDGNIKFSISLGKSSLPVYGIEFNPFNKLIYGITTN 236
PSGD+ IAD +N+ V FS DG K I GK P G+ + +I + N
Sbjct: 543 PSGDII-----IADYDNKWVSIFSNDGKFKTKIGSGKLMGP-KGVSVDRNGHII--VVDN 594
Query: 237 GENRGSSFTFNTTTLSKM-EPWNNNYEFRSPHDLCLAENGNIVFVAELHLKTVIKFH 404
F N +++ N + +F PH + N I+ + + H +V F+
Sbjct: 595 KACCVFIFQPNGKIVTRFGSRGNGDRQFAGPHFAAVNSNNEII-ITDFHNHSVKVFN 650
>sp|Q10064|YAMB_SCHPO Hypothetical protein C1F5.11c in chromosome I
Length = 3655
Score = 29.3 bits (64), Expect = 4.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 261 TFNTTTLSKMEPWNNNYEFRSPHDLCLAENGNIV 362
TFNT SK+E N N+ F+ P + L+ + I+
Sbjct: 3335 TFNTVLRSKIEIQNRNFSFQIPSSIPLSSHMRII 3368
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,824,480
Number of Sequences: 369166
Number of extensions: 995495
Number of successful extensions: 2271
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2268
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2484837250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)