Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_03006
(322 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P14407|FUMB_ECOLI Fumarate hydratase class I, anaerobic ... 154 5e-38
sp|P0AC33|FUMA_ECOLI Fumarate hydratase class I, aerobic (F... 154 8e-38
sp|Q8X4P8|FUMA_ECO57 Fumarate hydratase class I, aerobic (F... 154 8e-38
sp|P40720|FUMA_SALTY Fumarate hydratase class I, aerobic (F... 152 3e-37
sp|Q58034|FUMB_METJA Putative fumarate hydratase beta subun... 44 9e-05
sp|Q8XBK5|TTDB_ECO57 L(+)-tartrate dehydratase beta subunit... 42 4e-04
sp|P0AC37|TTDB_SHIFL L(+)-tartrate dehydratase beta subunit... 41 7e-04
sp|P34545|CBP1_CAEEL Protein cbp-1 31 1.0
sp|Q12231|YMU1_YEAST Transposon Ty1 protein A 30 1.3
sp|Q91X17|UROM_MOUSE Uromodulin precursor (Tamm-Horsfall ur... 30 1.7
>sp|P14407|FUMB_ECOLI Fumarate hydratase class I, anaerobic (Fumarase)
Length = 548
Score = 154 bits (390), Expect = 5e-38
Identities = 73/105 (69%), Positives = 85/105 (80%)
Frame = +1
Query: 7 DVVKVDLNKPMKEVLGLLSKYPIKTRLSLTGTLIVARDIAHAKLLERVNQGQSLPDYMLR 186
+ VKVDLN+PMKE+L LS+YP+ TRLSLTGT+IV RDIAHAKL E ++ G+ LP Y+
Sbjct: 357 EAVKVDLNRPMKEILAQLSQYPVSTRLSLTGTIIVGRDIAHAKLKELIDAGKELPQYIKD 416
Query: 187 HPVYYAGPAKTPPGMPSGSFGPTTAGRMDSYVGQFQKAGGSLIML 321
HP+YYAGPAKTP G PSGS GPTTAGRMDSYV Q GGS+IML
Sbjct: 417 HPIYYAGPAKTPAGYPSGSLGPTTAGRMDSYVDLLQSHGGSMIML 461
>sp|P0AC33|FUMA_ECOLI Fumarate hydratase class I, aerobic (Fumarase)
sp|P0AC34|FUMA_ECOL6 Fumarate hydratase class I, aerobic (Fumarase)
Length = 548
Score = 154 bits (388), Expect = 8e-38
Identities = 72/105 (68%), Positives = 85/105 (80%)
Frame = +1
Query: 7 DVVKVDLNKPMKEVLGLLSKYPIKTRLSLTGTLIVARDIAHAKLLERVNQGQSLPDYMLR 186
+ V+VDLN+PMKE+L LS+YP+ TRLSL GT+IV RDIAHAKL ER++ G+ LP Y+
Sbjct: 357 EAVRVDLNRPMKEILAQLSQYPVSTRLSLNGTIIVGRDIAHAKLKERMDNGEGLPQYIKD 416
Query: 187 HPVYYAGPAKTPPGMPSGSFGPTTAGRMDSYVGQFQKAGGSLIML 321
HP+YYAGPAKTP G SGS GPTTAGRMDSYV Q Q GGS+IML
Sbjct: 417 HPIYYAGPAKTPEGYASGSLGPTTAGRMDSYVDQLQAQGGSMIML 461
>sp|Q8X4P8|FUMA_ECO57 Fumarate hydratase class I, aerobic (Fumarase)
Length = 548
Score = 154 bits (388), Expect = 8e-38
Identities = 72/105 (68%), Positives = 85/105 (80%)
Frame = +1
Query: 7 DVVKVDLNKPMKEVLGLLSKYPIKTRLSLTGTLIVARDIAHAKLLERVNQGQSLPDYMLR 186
+ V+VDLN+PMKE+L LS+YP+ TRLSL GT+IV RDIAHAKL ER++ G+ LP Y+
Sbjct: 357 EAVRVDLNRPMKEILAQLSQYPVSTRLSLNGTIIVGRDIAHAKLKERMDNGEGLPQYIKD 416
Query: 187 HPVYYAGPAKTPPGMPSGSFGPTTAGRMDSYVGQFQKAGGSLIML 321
HP+YYAGPAKTP G SGS GPTTAGRMDSYV Q Q GGS+IML
Sbjct: 417 HPIYYAGPAKTPEGYASGSLGPTTAGRMDSYVDQLQALGGSMIML 461
>sp|P40720|FUMA_SALTY Fumarate hydratase class I, aerobic (Fumarase)
Length = 580
Score = 152 bits (383), Expect = 3e-37
Identities = 71/105 (67%), Positives = 85/105 (80%)
Frame = +1
Query: 7 DVVKVDLNKPMKEVLGLLSKYPIKTRLSLTGTLIVARDIAHAKLLERVNQGQSLPDYMLR 186
+ V+VDLN+PM E+L LS+YP+ TRLSL GT+IV RDIAHAKL ER+++G+ LP Y+
Sbjct: 357 EAVRVDLNRPMSEILQQLSQYPVSTRLSLNGTIIVGRDIAHAKLKERMDRGEGLPQYIKD 416
Query: 187 HPVYYAGPAKTPPGMPSGSFGPTTAGRMDSYVGQFQKAGGSLIML 321
HP+YYAGPAKTP G SGS GPTTAGRMDSYV Q Q GGS+IML
Sbjct: 417 HPIYYAGPAKTPEGYASGSLGPTTAGRMDSYVDQLQSQGGSMIML 461
>sp|Q58034|FUMB_METJA Putative fumarate hydratase beta subunit (Fumarase)
Length = 195
Score = 44.3 bits (103), Expect = 9e-05
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +1
Query: 91 LTGTLIVARDIAHAKLLERVNQGQSLPDYMLRHPVYYAGP--AKTPPGMPSGSFGPTTAG 264
L G + ARD AH K++E + + LP + +Y+AGP K S GPTT+
Sbjct: 24 LNGKIYTARDEAHLKIIEMLKSNEKLPFDLNESIIYHAGPIMKKVNDSWVCVSIGPTTSA 83
Query: 265 RMDSYVGQFQK 297
RM+ +F K
Sbjct: 84 RMNDVEEEFIK 94
>sp|Q8XBK5|TTDB_ECO57 L(+)-tartrate dehydratase beta subunit (L-TTD beta)
Length = 201
Score = 42.0 bits (97), Expect = 4e-04
Identities = 27/79 (34%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Frame = +1
Query: 91 LTGTLIVARDIAHAKLLERVNQGQSLPDYMLRHPVYYAGP--AKTPPGMPSGSFGPTTAG 264
LTGTL+ RD+ H +L+E + LP + +++AGP K S GPTT+
Sbjct: 25 LTGTLVTCRDVCHRRLIE---LKRPLPYDLNGKAIFHAGPIVRKNGDKWEMVSVGPTTSM 81
Query: 265 RMDSYVGQF-QKAGGSLIM 318
RM+S+ +F ++ G L++
Sbjct: 82 RMESFEREFIEQTGVKLVV 100
>sp|P0AC37|TTDB_SHIFL L(+)-tartrate dehydratase beta subunit (L-TTD beta)
sp|P0AC35|TTDB_ECOLI L(+)-tartrate dehydratase beta subunit (L-TTD beta)
sp|P0AC36|TTDB_ECOL6 L(+)-tartrate dehydratase beta subunit (L-TTD beta)
Length = 201
Score = 41.2 bits (95), Expect = 7e-04
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Frame = +1
Query: 91 LTGTLIVARDIAHAKLLERVNQGQSLPDYMLRHPVYYAGP--AKTPPGMPSGSFGPTTAG 264
LTGTL+ RD+ H +L+E + +P + +++AGP K S GPTT+
Sbjct: 25 LTGTLVTCRDVCHRRLIE---LKRPIPYDLNGKAIFHAGPIVRKNGDKWEMVSVGPTTSM 81
Query: 265 RMDSYVGQF-QKAGGSLIM 318
RM+S+ +F ++ G L++
Sbjct: 82 RMESFEREFIEQTGVKLVV 100
>sp|P34545|CBP1_CAEEL Protein cbp-1
Length = 2056
Score = 30.8 bits (68), Expect = 1.0
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = +1
Query: 154 QGQSLPDYMLRHPVYYAGPAKTPPGMPSGSFGPTTAG 264
QGQ P M R+P GP GMP G G + G
Sbjct: 189 QGQQFPGMMHRYPYAQGGPPPGAQGMPQGYPGVSRGG 225
>sp|Q12231|YMU1_YEAST Transposon Ty1 protein A
Length = 440
Score = 30.4 bits (67), Expect = 1.3
Identities = 21/52 (40%), Positives = 24/52 (46%)
Frame = +2
Query: 122 SRTQSYWSASTRANLCLTTCSDTPFITRGQRKPRPACPAAHLVRPPQAGWIP 277
S+ Q Y AST+AN TT TP + P A P V PPQ G P
Sbjct: 38 SKIQEYDKASTKANSQQTT---TPASSAVPENPHHASPQPASVPPPQNGPYP 86
>sp|Q91X17|UROM_MOUSE Uromodulin precursor (Tamm-Horsfall urinary glycoprotein) (THP)
Length = 642
Score = 30.0 bits (66), Expect = 1.7
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Frame = -1
Query: 310 GCRPPSGTGQRRNPSCLRWSDQMSRW-------ACRAGF 215
G P S G +C WSDQ RW AC GF
Sbjct: 234 GSHPSSSEGIVSRTACAHWSDQCCRWSTEIQVKACPGGF 272
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.317 0.137 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,201,603
Number of Sequences: 369166
Number of extensions: 945422
Number of successful extensions: 3390
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3385
length of database: 68,354,980
effective HSP length: 75
effective length of database: 54,499,855
effective search space used: 1689495505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)