Planaria EST Database


DrC_03005

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_03005
         (241 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9P7Y4|MED14_SCHPO  RNA polymerase II mediator complex su...    31   0.78 
sp|P09440|C1TM_YEAST  C-1-tetrahydrofolate synthase, mitocho...    30   1.7  
sp|P68726|SX25_LEIQH  Insect toxin 2-53 precursor (LqhIT2-53)      30   1.7  
sp|Q26292|SIX2_LEIQH  Insect toxin 2 precursor (Lqh IT2) (Lq...    30   2.3  
sp|P69496|CXI2_CONIM  I-superfamily conotoxin-2 precursor          29   3.9  
sp|P59222|SREC2_MOUSE  Scavenger receptor class F member 2 p...    28   5.1  
sp|Q96GP6|SREC2_HUMAN  Scavenger receptor class F member 2 p...    28   5.1  
sp|P59865|SCX7_CENLL  Sodium-channel modifier neurotoxin Cll...    28   5.1  
sp|P53310|YG55_YEAST  Very hypothetical 11.6 kDa protein in ...    28   6.6  
sp|O77770|LECT1_RABIT  Chondromodulin-I precursor (ChM-I) (L...    28   6.6  
>sp|Q9P7Y4|MED14_SCHPO RNA polymerase II mediator complex subunit 14 (RNA polymerase II
           mediator complex protein pmc1)
          Length = 879

 Score = 31.2 bits (69), Expect = 0.78
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = -1

Query: 196 IYLHFDLHSRFRFQQPYLHLIPSQFFQQALYVTLQALKQISFQLSAFEW 50
           ++L+ ++ + F  Q+P L LI +   +  LY  L  L Q +FQLS   W
Sbjct: 242 LHLNEEIAAAFVLQKPILPLIYNILHKFCLYQRLNLLSQQTFQLSRESW 290
>sp|P09440|C1TM_YEAST C-1-tetrahydrofolate synthase, mitochondrial precursor (C1-THF
           synthase) [Includes: Methylenetetrahydrofolate
           dehydrogenase ; Methenyltetrahydrofolate cyclohydrolase
           ; Formyltetrahydrofolate synthetase ]
          Length = 975

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 88  VLAE*HTMLAGKIVMVLNVNTVAGNEIENVNQNANKLI-ICFKKSVN 225
           +L E H  L GK  +VL  +++ GN I ++ +NAN  + +C   + N
Sbjct: 184 LLEEAHVKLDGKNAVVLGRSSIVGNPIASLLKNANATVTVCHSHTRN 230
>sp|P68726|SX25_LEIQH Insect toxin 2-53 precursor (LqhIT2-53)
          Length = 85

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +3

Query: 3   LIFVLIFAAVFV-TLINHSNAESWKDICLSACRVTYNACWKNCDGIKCKYG-CWKRNREC 176
           L+ +++ A++ + +L+N       +D C  AC V    C K C      YG CW     C
Sbjct: 4   LLLLIVSASMLIESLVNADGYIKRRDGCKVACLVGNEGCDKECKAYGGSYGYCWTWGLAC 63
>sp|Q26292|SIX2_LEIQH Insect toxin 2 precursor (Lqh IT2) (LqhIT2) (LqhIT2-44)
          Length = 85

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +3

Query: 3   LIFVLIFAAVFV-TLINHSNAESWKDICLSACRVTYNACWKNCDGIKCKYG-CWKRNREC 176
           L+ +++ A++ + +L+N       +D C  AC +    C K C      YG CW     C
Sbjct: 4   LLLLIVSASMLIESLVNADGYIKRRDGCKVACLIGNEGCDKECKAYGGSYGYCWTWGLAC 63
>sp|P69496|CXI2_CONIM I-superfamily conotoxin-2 precursor
          Length = 64

 Score = 28.9 bits (63), Expect = 3.9
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +3

Query: 3   LIFVLIFAAVFVTLINHSNAESWKDICL---SACRVTYNACWKNCDGIKCKYGC-WKRNR 170
           ++F L   + F+ +I   N     + C    S+CR +Y  C K+C   +CK+ C W   R
Sbjct: 1   MMFRLTSVSCFLLVIVCLNLVVLTNACRLEGSSCRRSYQCCHKSCCIRECKFPCRWDGKR 60
>sp|P59222|SREC2_MOUSE Scavenger receptor class F member 2 precursor (Scavenger receptor
           expressed by endothelial cells 2 protein) (SREC-II)
          Length = 833

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = +3

Query: 57  NAESWKDICLSACRVTYNACWKNCDGIKCKYGCWKRNRECKSKC 188
           +A  W   C  AC+  +  C       +C+ G W    +C S C
Sbjct: 136 HARRWGARCEHACQCQHGTCHPRSGACRCEPGWW--GAQCASAC 177
>sp|Q96GP6|SREC2_HUMAN Scavenger receptor class F member 2 precursor (Scavenger receptor
           expressed by endothelial cells 2 protein) (SREC-II)
           (SRECRP-1)
          Length = 866

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 12/44 (27%), Positives = 18/44 (40%)
 Frame = +3

Query: 57  NAESWKDICLSACRVTYNACWKNCDGIKCKYGCWKRNRECKSKC 188
           +A  W   C  AC+  +  C       +C+ G W    +C S C
Sbjct: 144 HARRWGARCEHACQCQHGTCHPRSGACRCEPGWW--GAQCASAC 185
>sp|P59865|SCX7_CENLL Sodium-channel modifier neurotoxin Cll7 precursor
          Length = 85

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
 Frame = +3

Query: 78  ICLSACRVTYNACWKNCDGIK-----CKYGCWK--RNRECKSKCK 191
           + ++AC V +   W     +      CKY CWK   N+ C  +CK
Sbjct: 5   LMITACLVLFGTVWAKEGYLVNTYTGCKYICWKLGENKYCIDECK 49
>sp|P53310|YG55_YEAST Very hypothetical 11.6 kDa protein in PFK1-TDS4 intergenic region
          Length = 102

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -2

Query: 183 LIYILDFVSSNRIYI*YHHNFSSKHCML 100
           L+Y  D VS  R+YI Y  +  S+ CML
Sbjct: 50  LVYNEDIVSQTRLYIYYRGSRDSRACML 77
>sp|O77770|LECT1_RABIT Chondromodulin-I precursor (ChM-I) (Leukocyte cell-derived
           chemotaxin 1) [Contains: Chondrosurfactant protein
           (CH-SP)]
          Length = 333

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 78  ICLSACRVTYNACWKNCDGIKCKYGCWKRNRE-CKSKCK 191
           IC   CR +Y  C K C+ +   Y  W  N + C+S C+
Sbjct: 280 ICCIECRRSYTHCQKICEPLG-GYNPWPYNYQGCRSACR 317
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,849,394
Number of Sequences: 369166
Number of extensions: 431200
Number of successful extensions: 1450
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1450
length of database: 68,354,980
effective HSP length: 50
effective length of database: 59,118,230
effective search space used: 1714428670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)