Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_03005
(241 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9P7Y4|MED14_SCHPO RNA polymerase II mediator complex su... 31 0.78
sp|P09440|C1TM_YEAST C-1-tetrahydrofolate synthase, mitocho... 30 1.7
sp|P68726|SX25_LEIQH Insect toxin 2-53 precursor (LqhIT2-53) 30 1.7
sp|Q26292|SIX2_LEIQH Insect toxin 2 precursor (Lqh IT2) (Lq... 30 2.3
sp|P69496|CXI2_CONIM I-superfamily conotoxin-2 precursor 29 3.9
sp|P59222|SREC2_MOUSE Scavenger receptor class F member 2 p... 28 5.1
sp|Q96GP6|SREC2_HUMAN Scavenger receptor class F member 2 p... 28 5.1
sp|P59865|SCX7_CENLL Sodium-channel modifier neurotoxin Cll... 28 5.1
sp|P53310|YG55_YEAST Very hypothetical 11.6 kDa protein in ... 28 6.6
sp|O77770|LECT1_RABIT Chondromodulin-I precursor (ChM-I) (L... 28 6.6
>sp|Q9P7Y4|MED14_SCHPO RNA polymerase II mediator complex subunit 14 (RNA polymerase II
mediator complex protein pmc1)
Length = 879
Score = 31.2 bits (69), Expect = 0.78
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -1
Query: 196 IYLHFDLHSRFRFQQPYLHLIPSQFFQQALYVTLQALKQISFQLSAFEW 50
++L+ ++ + F Q+P L LI + + LY L L Q +FQLS W
Sbjct: 242 LHLNEEIAAAFVLQKPILPLIYNILHKFCLYQRLNLLSQQTFQLSRESW 290
>sp|P09440|C1TM_YEAST C-1-tetrahydrofolate synthase, mitochondrial precursor (C1-THF
synthase) [Includes: Methylenetetrahydrofolate
dehydrogenase ; Methenyltetrahydrofolate cyclohydrolase
; Formyltetrahydrofolate synthetase ]
Length = 975
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +1
Query: 88 VLAE*HTMLAGKIVMVLNVNTVAGNEIENVNQNANKLI-ICFKKSVN 225
+L E H L GK +VL +++ GN I ++ +NAN + +C + N
Sbjct: 184 LLEEAHVKLDGKNAVVLGRSSIVGNPIASLLKNANATVTVCHSHTRN 230
>sp|P68726|SX25_LEIQH Insect toxin 2-53 precursor (LqhIT2-53)
Length = 85
Score = 30.0 bits (66), Expect = 1.7
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 3 LIFVLIFAAVFV-TLINHSNAESWKDICLSACRVTYNACWKNCDGIKCKYG-CWKRNREC 176
L+ +++ A++ + +L+N +D C AC V C K C YG CW C
Sbjct: 4 LLLLIVSASMLIESLVNADGYIKRRDGCKVACLVGNEGCDKECKAYGGSYGYCWTWGLAC 63
>sp|Q26292|SIX2_LEIQH Insect toxin 2 precursor (Lqh IT2) (LqhIT2) (LqhIT2-44)
Length = 85
Score = 29.6 bits (65), Expect = 2.3
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Frame = +3
Query: 3 LIFVLIFAAVFV-TLINHSNAESWKDICLSACRVTYNACWKNCDGIKCKYG-CWKRNREC 176
L+ +++ A++ + +L+N +D C AC + C K C YG CW C
Sbjct: 4 LLLLIVSASMLIESLVNADGYIKRRDGCKVACLIGNEGCDKECKAYGGSYGYCWTWGLAC 63
>sp|P69496|CXI2_CONIM I-superfamily conotoxin-2 precursor
Length = 64
Score = 28.9 bits (63), Expect = 3.9
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +3
Query: 3 LIFVLIFAAVFVTLINHSNAESWKDICL---SACRVTYNACWKNCDGIKCKYGC-WKRNR 170
++F L + F+ +I N + C S+CR +Y C K+C +CK+ C W R
Sbjct: 1 MMFRLTSVSCFLLVIVCLNLVVLTNACRLEGSSCRRSYQCCHKSCCIRECKFPCRWDGKR 60
>sp|P59222|SREC2_MOUSE Scavenger receptor class F member 2 precursor (Scavenger receptor
expressed by endothelial cells 2 protein) (SREC-II)
Length = 833
Score = 28.5 bits (62), Expect = 5.1
Identities = 12/44 (27%), Positives = 18/44 (40%)
Frame = +3
Query: 57 NAESWKDICLSACRVTYNACWKNCDGIKCKYGCWKRNRECKSKC 188
+A W C AC+ + C +C+ G W +C S C
Sbjct: 136 HARRWGARCEHACQCQHGTCHPRSGACRCEPGWW--GAQCASAC 177
>sp|Q96GP6|SREC2_HUMAN Scavenger receptor class F member 2 precursor (Scavenger receptor
expressed by endothelial cells 2 protein) (SREC-II)
(SRECRP-1)
Length = 866
Score = 28.5 bits (62), Expect = 5.1
Identities = 12/44 (27%), Positives = 18/44 (40%)
Frame = +3
Query: 57 NAESWKDICLSACRVTYNACWKNCDGIKCKYGCWKRNRECKSKC 188
+A W C AC+ + C +C+ G W +C S C
Sbjct: 144 HARRWGARCEHACQCQHGTCHPRSGACRCEPGWW--GAQCASAC 185
>sp|P59865|SCX7_CENLL Sodium-channel modifier neurotoxin Cll7 precursor
Length = 85
Score = 28.5 bits (62), Expect = 5.1
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Frame = +3
Query: 78 ICLSACRVTYNACWKNCDGIK-----CKYGCWK--RNRECKSKCK 191
+ ++AC V + W + CKY CWK N+ C +CK
Sbjct: 5 LMITACLVLFGTVWAKEGYLVNTYTGCKYICWKLGENKYCIDECK 49
>sp|P53310|YG55_YEAST Very hypothetical 11.6 kDa protein in PFK1-TDS4 intergenic region
Length = 102
Score = 28.1 bits (61), Expect = 6.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -2
Query: 183 LIYILDFVSSNRIYI*YHHNFSSKHCML 100
L+Y D VS R+YI Y + S+ CML
Sbjct: 50 LVYNEDIVSQTRLYIYYRGSRDSRACML 77
>sp|O77770|LECT1_RABIT Chondromodulin-I precursor (ChM-I) (Leukocyte cell-derived
chemotaxin 1) [Contains: Chondrosurfactant protein
(CH-SP)]
Length = 333
Score = 28.1 bits (61), Expect = 6.6
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 78 ICLSACRVTYNACWKNCDGIKCKYGCWKRNRE-CKSKCK 191
IC CR +Y C K C+ + Y W N + C+S C+
Sbjct: 280 ICCIECRRSYTHCQKICEPLG-GYNPWPYNYQGCRSACR 317
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,849,394
Number of Sequences: 369166
Number of extensions: 431200
Number of successful extensions: 1450
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1450
length of database: 68,354,980
effective HSP length: 50
effective length of database: 59,118,230
effective search space used: 1714428670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)