Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_03000
(488 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O15516|CLOCK_HUMAN Circadian locomoter output cycles kap... 30 3.9
sp|P03160|DPOL_WHV1 P protein [Includes: DNA-directed DNA p... 28 8.8
>sp|O15516|CLOCK_HUMAN Circadian locomoter output cycles kaput protein (hCLOCK)
Length = 846
Score = 29.6 bits (65), Expect = 3.9
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 31 CHLLRSLAEFQFPSTFQYFHFMIMRHNFAALNTCQS 138
CH+LR + + PST++Y F+ NF +LN+ S
Sbjct: 195 CHMLRGTIDPKEPSTYEYVKFI---GNFKSLNSVSS 227
>sp|P03160|DPOL_WHV1 P protein [Includes: DNA-directed DNA polymerase ; RNA-directed DNA
polymerase ; Ribonuclease H ]
Length = 879
Score = 28.5 bits (62), Expect = 8.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 288 THICSVNFYLPINIKMNNNKYW 353
THICSV L I++ +N K+W
Sbjct: 602 THICSVFLDLGIHLNVNKTKWW 623
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,951,725
Number of Sequences: 369166
Number of extensions: 923859
Number of successful extensions: 1615
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1615
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2970720600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)