Planaria EST Database


DrC_03000

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_03000
         (488 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O15516|CLOCK_HUMAN  Circadian locomoter output cycles kap...    30   3.9  
sp|P03160|DPOL_WHV1  P protein [Includes: DNA-directed DNA p...    28   8.8  
>sp|O15516|CLOCK_HUMAN Circadian locomoter output cycles kaput protein (hCLOCK)
          Length = 846

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 31  CHLLRSLAEFQFPSTFQYFHFMIMRHNFAALNTCQS 138
           CH+LR   + + PST++Y  F+    NF +LN+  S
Sbjct: 195 CHMLRGTIDPKEPSTYEYVKFI---GNFKSLNSVSS 227
>sp|P03160|DPOL_WHV1 P protein [Includes: DNA-directed DNA polymerase ; RNA-directed DNA
           polymerase ; Ribonuclease H ]
          Length = 879

 Score = 28.5 bits (62), Expect = 8.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +3

Query: 288 THICSVNFYLPINIKMNNNKYW 353
           THICSV   L I++ +N  K+W
Sbjct: 602 THICSVFLDLGIHLNVNKTKWW 623
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,951,725
Number of Sequences: 369166
Number of extensions: 923859
Number of successful extensions: 1615
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1615
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 2970720600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)