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Planaria EST Database

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02975
         (440 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P48571|LEU1_BUCRP  2-isopropylmalate synthase (Alpha-isop...    29   4.0  

>sp|P48571|LEU1_BUCRP 2-isopropylmalate synthase (Alpha-isopropylmalate synthase)
           (Alpha-IPM synthetase)
          Length = 518

 Score = 29.3 bits (64), Expect = 4.0
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 15  VSIEKNVWKVS*IFESIKKLTKFNN 89
           V++  N+WK + + E +KKL K NN
Sbjct: 494 VNVLNNIWKANQVNEKLKKLKKINN 518

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,228,758
Number of Sequences: 369166
Number of extensions: 660459
Number of successful extensions: 1062
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1062
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2294548080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)