Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02973
(593 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q10168|YAUF_SCHPO Hypothetical protein C26A3.15c in chro... 32 1.6
sp|P13824|ARP2_PLAFA Clustered-asparagine-rich protein (CARP) 32 1.6
sp|P40467|YIN0_YEAST Putative 108.8 kDa transcriptional reg... 31 2.0
sp|Q601V6|TRMD_MYCH2 tRNA (Guanine-N(1)-)-methyltransferase... 31 2.7
sp|O75976|CBPD_HUMAN Carboxypeptidase D precursor (Metalloc... 31 2.7
sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein 30 3.5
sp|Q00193|ZP4_RABIT Zona pellucida sperm-binding protein 4 ... 30 4.6
sp|P50109|PSP2_YEAST Protein PSP2 (Mitochondrial regulator ... 30 4.6
sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lys... 30 4.6
sp|O27051|SERA_METTH D-3-phosphoglycerate dehydrogenase (PGDH) 29 7.8
>sp|Q10168|YAUF_SCHPO Hypothetical protein C26A3.15c in chromosome I
Length = 598
Score = 31.6 bits (70), Expect = 1.6
Identities = 27/104 (25%), Positives = 41/104 (39%)
Frame = -1
Query: 521 STGRY*LKSVSGLINFGFTFRINSPKLPLELLLFIMSSVATINLSNSSKSPQIIHVGGSQ 342
+TG S S +FG T N+ L + S+ + + + SK+ G +
Sbjct: 75 TTGNSTNASTSSPFSFGST-NTNNTAGAKPLFGGLGSTGSANSTGDKSKNTASSATGAAT 133
Query: 341 TSPKGQVFHVGGNNPESNFSNSPIQMNMQGPKLAYSASNFPSEA 210
T+P G F+ G +N NF N P A + S F A
Sbjct: 134 TNPSGSTFNFGSSNNSFNFGKPASTTNTTTPAAASTGSLFGKPA 177
>sp|P13824|ARP2_PLAFA Clustered-asparagine-rich protein (CARP)
Length = 443
Score = 31.6 bits (70), Expect = 1.6
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Frame = -2
Query: 157 NNNFKCSSNINHSSR*MISN-TFNNSKTFISD---SQNIFRLNTNLKNSFNNSTK 5
N N ++N N+S+ M+ N FNN++ ++ +QN F LN N N++NN+ K
Sbjct: 187 NKNMNNNNNNNNSNNNMMMNMNFNNNQQMNNNPMLNQNNFMLNNN--NNYNNNAK 239
>sp|P40467|YIN0_YEAST Putative 108.8 kDa transcriptional regulatory protein in FKH1-STH1
intergenic region
Length = 964
Score = 31.2 bits (69), Expect = 2.0
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -2
Query: 163 SLNNNFKCSSNINHSSR*MISNTFNNSKTFISDSQNIFRLNTNLKNSFNNS 11
++NNN+ S N+++ + +N+ NN +D+ N N N N+ NNS
Sbjct: 820 TINNNYNNVSGKNNNNNNITNNSNNNHNNNNNDNNNNNNNNNNNNNNNNNS 870
>sp|Q601V6|TRMD_MYCH2 tRNA (Guanine-N(1)-)-methyltransferase (M1G-methyltransferase)
(tRNA [GM37] methyltransferase)
Length = 227
Score = 30.8 bits (68), Expect = 2.7
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 12/61 (19%)
Frame = +1
Query: 361 IICGDLEEFDKLIVATLDIINNNSSKGNF----GEF--------ILNVKPKFINPETLFN 504
I+CG E FD+ I+ + I+ S G+F GE I+ +KP INPE+L N
Sbjct: 104 ILCGHYEGFDQRIID--NFIDFELSLGDFILTGGEIAAMAIIDAIIRLKPDIINPESLKN 161
Query: 505 Q 507
+
Sbjct: 162 E 162
>sp|O75976|CBPD_HUMAN Carboxypeptidase D precursor (Metallocarboxypeptidase D) (gp180)
Length = 1380
Score = 30.8 bits (68), Expect = 2.7
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +1
Query: 403 ATLDI--INNNSSKGNFGEFILNVKPKFINPETLFNQYLPVEMTKLIV 540
AT+ + IN+N + G FG+F + P N + Y+P+ +T ++V
Sbjct: 400 ATISVAGINHNITTGRFGDFYRLLVPGTYNLTVVLTGYMPLTVTNVVV 447
>sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein
Length = 448
Score = 30.4 bits (67), Expect = 3.5
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = -2
Query: 157 NNNFKCSSNINHSSR*MISNTFNNSKTFISDSQNIFRLNTNLKNSFNNS 11
NNN +SNIN+ + +N+ NN+ + +++ N N N N+ NN+
Sbjct: 273 NNNNNNNSNINNINNNNNNNSNNNNNSSNNNNNNNNSTNNNTNNNNNNT 321
Score = 30.0 bits (66), Expect = 4.6
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = -2
Query: 160 LNNNFKCSSNINHSSR*MISNTFNNSKTFISDSQNIFRLNTNLKNSFNNST 8
LN+N ++N N+S+ I+N NN+ +++ N N N NS NN+T
Sbjct: 267 LNSNNNNNNNNNNSN---INNINNNNNNNSNNNNNSSNNNNNNNNSTNNNT 314
Score = 30.0 bits (66), Expect = 4.6
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = -2
Query: 157 NNNFKCSSNINHSSR*MISNTFNNSKTFISDSQNIFRLNTNLKNSFNNSTKL 2
NNN ++N N+++ +NT NN+ +++ N N N N N+ +
Sbjct: 305 NNNNSTNNNTNNNNNNTNNNTNNNNNNINNNNNNTNNNNNNANNQNTNNNNM 356
>sp|Q00193|ZP4_RABIT Zona pellucida sperm-binding protein 4 precursor (Zona pellucida
sperm-binding protein B) (Zona pellucida glycoprotein
ZP-X) (RC55)
Length = 540
Score = 30.0 bits (66), Expect = 4.6
Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 7/95 (7%)
Frame = -1
Query: 476 FGFTFRINSPKLPLELLLFIMSSVATINLSNSSKSPQIIHVGGSQTSPKGQV-------F 318
F F + + + F+ SSVA + K P +H S P G
Sbjct: 410 FDLPFPSHHQRFSISTFSFLDSSVA----KEALKGPIYLHCSVSVCQPTGTQSCTVTCPI 465
Query: 317 HVGGNNPESNFSNSPIQMNMQGPKLAYSASNFPSE 213
N + NF NS ++ +GP + A+ PSE
Sbjct: 466 DSRRRNSDINFQNSTANISSKGPMILLQATEDPSE 500
>sp|P50109|PSP2_YEAST Protein PSP2 (Mitochondrial regulator of splicing 15)
Length = 578
Score = 30.0 bits (66), Expect = 4.6
Identities = 21/50 (42%), Positives = 25/50 (50%)
Frame = -2
Query: 157 NNNFKCSSNINHSSR*MISNTFNNSKTFISDSQNIFRLNTNLKNSFNNST 8
NNN SSN N+ SR + NN + SDS + N KN F NST
Sbjct: 449 NNNNNSSSNNNNGSR--YHDRQNNEEGLTSDSS--LDASGNKKNDFTNST 494
>sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lysis A (Tyrosine-protein kinase
1)
Length = 1584
Score = 30.0 bits (66), Expect = 4.6
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = -2
Query: 157 NNNFKCSSNINHSSR*MISNTFNNSKTFISDSQNIFRLNTNLKNSFNN 14
NNN SSN N+++ I+NT NN+ + +++ N N+N ++ NN
Sbjct: 475 NNNNSNSSNTNNNN---INNTTNNNNSNSNNNNNNNNSNSNSNSNNNN 519
Score = 29.3 bits (64), Expect = 7.8
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = -2
Query: 157 NNNFKCSSNINHSSR*MISNTFNNSKTFISDSQNIFRLNTNLKNSFNNS 11
NNN ++N N+++ SN+ N + I+++ N N+N N+ NNS
Sbjct: 461 NNNNNNNNNNNNNNNNNNSNSSNTNNNNINNTTNNNNSNSNNNNNNNNS 509
>sp|O27051|SERA_METTH D-3-phosphoglycerate dehydrogenase (PGDH)
Length = 525
Score = 29.3 bits (64), Expect = 7.8
Identities = 17/58 (29%), Positives = 26/58 (44%)
Frame = +2
Query: 2 EFGTVVETVLEVGIEPENILAVADKRFAVVESIADHLTAAVVDIAAAFEIVVEAGIEV 175
E V E V+ I PE +L A+V +T V++ A +I+ AG+ V
Sbjct: 19 ELEEVAEVVVNTTITPEELLDAIKDFDAIVVRSRTKVTREVIEAAPRLKIIARAGVGV 76
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,199,792
Number of Sequences: 369166
Number of extensions: 917707
Number of successful extensions: 3068
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3005
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4504118060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)