Planaria EST Database


DrC_02973

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02973
         (593 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q10168|YAUF_SCHPO  Hypothetical protein C26A3.15c in chro...    32   1.6  
sp|P13824|ARP2_PLAFA  Clustered-asparagine-rich protein (CARP)     32   1.6  
sp|P40467|YIN0_YEAST  Putative 108.8 kDa transcriptional reg...    31   2.0  
sp|Q601V6|TRMD_MYCH2  tRNA (Guanine-N(1)-)-methyltransferase...    31   2.7  
sp|O75976|CBPD_HUMAN  Carboxypeptidase D precursor (Metalloc...    31   2.7  
sp|P14196|AAC2_DICDI  AAC-rich mRNA clone AAC11 protein            30   3.5  
sp|Q00193|ZP4_RABIT  Zona pellucida sperm-binding protein 4 ...    30   4.6  
sp|P50109|PSP2_YEAST  Protein PSP2 (Mitochondrial regulator ...    30   4.6  
sp|P18160|KYK1_DICDI  Non-receptor tyrosine kinase spore lys...    30   4.6  
sp|O27051|SERA_METTH  D-3-phosphoglycerate dehydrogenase (PGDH)    29   7.8  
>sp|Q10168|YAUF_SCHPO Hypothetical protein C26A3.15c in chromosome I
          Length = 598

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 27/104 (25%), Positives = 41/104 (39%)
 Frame = -1

Query: 521 STGRY*LKSVSGLINFGFTFRINSPKLPLELLLFIMSSVATINLSNSSKSPQIIHVGGSQ 342
           +TG     S S   +FG T   N+      L   + S+ +  +  + SK+      G + 
Sbjct: 75  TTGNSTNASTSSPFSFGST-NTNNTAGAKPLFGGLGSTGSANSTGDKSKNTASSATGAAT 133

Query: 341 TSPKGQVFHVGGNNPESNFSNSPIQMNMQGPKLAYSASNFPSEA 210
           T+P G  F+ G +N   NF       N   P  A + S F   A
Sbjct: 134 TNPSGSTFNFGSSNNSFNFGKPASTTNTTTPAAASTGSLFGKPA 177
>sp|P13824|ARP2_PLAFA Clustered-asparagine-rich protein (CARP)
          Length = 443

 Score = 31.6 bits (70), Expect = 1.6
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
 Frame = -2

Query: 157 NNNFKCSSNINHSSR*MISN-TFNNSKTFISD---SQNIFRLNTNLKNSFNNSTK 5
           N N   ++N N+S+  M+ N  FNN++   ++   +QN F LN N  N++NN+ K
Sbjct: 187 NKNMNNNNNNNNSNNNMMMNMNFNNNQQMNNNPMLNQNNFMLNNN--NNYNNNAK 239
>sp|P40467|YIN0_YEAST Putative 108.8 kDa transcriptional regulatory protein in FKH1-STH1
           intergenic region
          Length = 964

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = -2

Query: 163 SLNNNFKCSSNINHSSR*MISNTFNNSKTFISDSQNIFRLNTNLKNSFNNS 11
           ++NNN+   S  N+++  + +N+ NN     +D+ N    N N  N+ NNS
Sbjct: 820 TINNNYNNVSGKNNNNNNITNNSNNNHNNNNNDNNNNNNNNNNNNNNNNNS 870
>sp|Q601V6|TRMD_MYCH2 tRNA (Guanine-N(1)-)-methyltransferase (M1G-methyltransferase)
           (tRNA [GM37] methyltransferase)
          Length = 227

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 12/61 (19%)
 Frame = +1

Query: 361 IICGDLEEFDKLIVATLDIINNNSSKGNF----GEF--------ILNVKPKFINPETLFN 504
           I+CG  E FD+ I+   + I+   S G+F    GE         I+ +KP  INPE+L N
Sbjct: 104 ILCGHYEGFDQRIID--NFIDFELSLGDFILTGGEIAAMAIIDAIIRLKPDIINPESLKN 161

Query: 505 Q 507
           +
Sbjct: 162 E 162
>sp|O75976|CBPD_HUMAN Carboxypeptidase D precursor (Metallocarboxypeptidase D) (gp180)
          Length = 1380

 Score = 30.8 bits (68), Expect = 2.7
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +1

Query: 403 ATLDI--INNNSSKGNFGEFILNVKPKFINPETLFNQYLPVEMTKLIV 540
           AT+ +  IN+N + G FG+F   + P   N   +   Y+P+ +T ++V
Sbjct: 400 ATISVAGINHNITTGRFGDFYRLLVPGTYNLTVVLTGYMPLTVTNVVV 447
>sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein
          Length = 448

 Score = 30.4 bits (67), Expect = 3.5
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -2

Query: 157 NNNFKCSSNINHSSR*MISNTFNNSKTFISDSQNIFRLNTNLKNSFNNS 11
           NNN   +SNIN+ +    +N+ NN+ +  +++ N    N N  N+ NN+
Sbjct: 273 NNNNNNNSNINNINNNNNNNSNNNNNSSNNNNNNNNSTNNNTNNNNNNT 321

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = -2

Query: 160 LNNNFKCSSNINHSSR*MISNTFNNSKTFISDSQNIFRLNTNLKNSFNNST 8
           LN+N   ++N N+S+   I+N  NN+    +++ N    N N  NS NN+T
Sbjct: 267 LNSNNNNNNNNNNSN---INNINNNNNNNSNNNNNSSNNNNNNNNSTNNNT 314

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = -2

Query: 157 NNNFKCSSNINHSSR*MISNTFNNSKTFISDSQNIFRLNTNLKNSFNNSTKL 2
           NNN   ++N N+++    +NT NN+    +++ N    N N  N   N+  +
Sbjct: 305 NNNNSTNNNTNNNNNNTNNNTNNNNNNINNNNNNTNNNNNNANNQNTNNNNM 356
>sp|Q00193|ZP4_RABIT Zona pellucida sperm-binding protein 4 precursor (Zona pellucida
           sperm-binding protein B) (Zona pellucida glycoprotein
           ZP-X) (RC55)
          Length = 540

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 24/95 (25%), Positives = 36/95 (37%), Gaps = 7/95 (7%)
 Frame = -1

Query: 476 FGFTFRINSPKLPLELLLFIMSSVATINLSNSSKSPQIIHVGGSQTSPKGQV-------F 318
           F   F  +  +  +    F+ SSVA      + K P  +H   S   P G          
Sbjct: 410 FDLPFPSHHQRFSISTFSFLDSSVA----KEALKGPIYLHCSVSVCQPTGTQSCTVTCPI 465

Query: 317 HVGGNNPESNFSNSPIQMNMQGPKLAYSASNFPSE 213
                N + NF NS   ++ +GP +   A+  PSE
Sbjct: 466 DSRRRNSDINFQNSTANISSKGPMILLQATEDPSE 500
>sp|P50109|PSP2_YEAST Protein PSP2 (Mitochondrial regulator of splicing 15)
          Length = 578

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 21/50 (42%), Positives = 25/50 (50%)
 Frame = -2

Query: 157 NNNFKCSSNINHSSR*MISNTFNNSKTFISDSQNIFRLNTNLKNSFNNST 8
           NNN   SSN N+ SR    +  NN +   SDS      + N KN F NST
Sbjct: 449 NNNNNSSSNNNNGSR--YHDRQNNEEGLTSDSS--LDASGNKKNDFTNST 494
>sp|P18160|KYK1_DICDI Non-receptor tyrosine kinase spore lysis A (Tyrosine-protein kinase
           1)
          Length = 1584

 Score = 30.0 bits (66), Expect = 4.6
 Identities = 17/48 (35%), Positives = 29/48 (60%)
 Frame = -2

Query: 157 NNNFKCSSNINHSSR*MISNTFNNSKTFISDSQNIFRLNTNLKNSFNN 14
           NNN   SSN N+++   I+NT NN+ +  +++ N    N+N  ++ NN
Sbjct: 475 NNNNSNSSNTNNNN---INNTTNNNNSNSNNNNNNNNSNSNSNSNNNN 519

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -2

Query: 157 NNNFKCSSNINHSSR*MISNTFNNSKTFISDSQNIFRLNTNLKNSFNNS 11
           NNN   ++N N+++    SN+ N +   I+++ N    N+N  N+ NNS
Sbjct: 461 NNNNNNNNNNNNNNNNNNSNSSNTNNNNINNTTNNNNSNSNNNNNNNNS 509
>sp|O27051|SERA_METTH D-3-phosphoglycerate dehydrogenase (PGDH)
          Length = 525

 Score = 29.3 bits (64), Expect = 7.8
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +2

Query: 2   EFGTVVETVLEVGIEPENILAVADKRFAVVESIADHLTAAVVDIAAAFEIVVEAGIEV 175
           E   V E V+   I PE +L       A+V      +T  V++ A   +I+  AG+ V
Sbjct: 19  ELEEVAEVVVNTTITPEELLDAIKDFDAIVVRSRTKVTREVIEAAPRLKIIARAGVGV 76
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,199,792
Number of Sequences: 369166
Number of extensions: 917707
Number of successful extensions: 3068
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3005
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4504118060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)