Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02966
(801 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38538|SLAPH_BRECH Surface layer protein precursor (Hexa... 35 0.18
sp|Q10367|YDBH_SCHPO Hypothetical protein C22E12.17c in chr... 32 2.0
sp|Q49419|Y328_MYCGE Hypothetical protein MG328 32 2.0
sp|P27241|RFAZ_ECOLI Lipopolysaccharide core biosynthesis p... 32 2.6
sp|O75001|MCM7_SCHPO DNA replication licensing factor mcm7 ... 32 2.6
sp|Q98QL0|RNR_MYCPU Ribonuclease R (RNase R) (VacB protein ... 31 3.4
sp|Q8XMJ8|ARLY_CLOPE Argininosuccinate lyase (Arginosuccina... 31 4.5
sp|Q9R0X5|RPGR_MOUSE X-linked retinitis pigmentosa GTPase r... 30 5.9
sp|P09612|VGLM_BUNL7 M polyprotein precursor [Contains: Gly... 30 5.9
sp|P42694|HELZ_HUMAN Probable helicase with zinc-finger domain 30 5.9
>sp|P38538|SLAPH_BRECH Surface layer protein precursor (Hexagonal wall protein) (HWP)
Length = 1116
Score = 35.4 bits (80), Expect = 0.18
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Frame = +3
Query: 402 ILSIDQFEFTD---LQDPFSTEKSKIFDKELISQKQSTIVKAIKPKPI-------INENF 551
I+S+DQ + D + S +K + F+K+L+ Q +VK +N +
Sbjct: 633 IVSLDQKDIYDRYGVNYDKSNDKRQAFEKDLVELLQPKVVKEDSATDANQTVLLEVNFDS 692
Query: 552 QGSIQPIILID-KVNQNENIKSTKDKLSSTIDSGFTMTDGFYANNFESTDKTNIFK 716
+G + + ++D K+ +E KST DKL+ D ++E TDKT +FK
Sbjct: 693 KGEVDKVKVLDSKLKYSE--KSTWDKLADEDDD--------VVGDYEVTDKTAVFK 738
>sp|Q10367|YDBH_SCHPO Hypothetical protein C22E12.17c in chromosome I
Length = 486
Score = 32.0 bits (71), Expect = 2.0
Identities = 38/130 (29%), Positives = 61/130 (46%), Gaps = 9/130 (6%)
Frame = +3
Query: 273 SSVTVQQECEIVKVPLAELSVSKVKKYPPVLKMDNLSNFND-----DTILSIDQFEFTDL 437
SS T +Q E +K L+V YP +L MD LSN ++ DT D +F
Sbjct: 111 SSKTAKQYLEKLK----SLAVEDEANYPDILDMDFLSNTHEGSSAADTTNEDD--DFFSA 164
Query: 438 QDPFSTEKS--KIFDK-ELISQKQSTIVKA-IKPKPIINENFQGSIQPIILIDKVNQNEN 605
D S +KS + DK +L S S +V++ K +P++ + + P ++ ++
Sbjct: 165 WDKASVKKSDDNLDDKTDLASTSSSVVVESGEKDEPVVVTEEKTMVSP------PSRPDS 218
Query: 606 IKSTKDKLSS 635
+TK K SS
Sbjct: 219 TSTTKSKTSS 228
>sp|Q49419|Y328_MYCGE Hypothetical protein MG328
Length = 756
Score = 32.0 bits (71), Expect = 2.0
Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 27/129 (20%)
Frame = +3
Query: 342 VKKYPPVLKMDNLSNF----------------------NDDTILSIDQFEFTDLQDPFST 455
+K+ P K+D L ++ N+D I ++Q E DL+ S
Sbjct: 224 LKEQHPTKKVDELDDYNNKELLLENADLKKQIDDLKENNNDQIFDLEQ-EIDDLKRRLSE 282
Query: 456 EKSK-IFDKEL---ISQKQSTIVKAIKPKPIINENFQGSIQPIILIDKVNQN-ENIKSTK 620
EKSK + K+L + Q+ + + ++ KP+ +I P L D+VN+ EN+K K
Sbjct: 283 EKSKHLHTKKLQDDLLQENRDLYEQLQNKPV-------AINP--LSDEVNEELENLKQEK 333
Query: 621 DKLSSTIDS 647
LS +D+
Sbjct: 334 ALLSDQLDA 342
>sp|P27241|RFAZ_ECOLI Lipopolysaccharide core biosynthesis protein rfaZ
Length = 283
Score = 31.6 bits (70), Expect = 2.6
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 375 NLSNFNDDTILSIDQFEFTDLQDPFSTEKSKIFDKELISQKQST 506
N+ N +DDT +S D F LQD S E+SK ++ + + ST
Sbjct: 236 NIYNLSDDTAISYDVIPFIKLQD-ISAEESKDMTRKKMQYRTST 278
>sp|O75001|MCM7_SCHPO DNA replication licensing factor mcm7 (Minichromosome maintenance
protein 7)
Length = 760
Score = 31.6 bits (70), Expect = 2.6
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Frame = +3
Query: 348 KYPPVLKMDNLSNFNDDTILSID-----QFEFTDLQDPFSTEKSKIFDKELISQKQSTIV 512
KY +L+ +SN + ++++D +F+ +D Q + E + EL SQ
Sbjct: 55 KYMDILQ--KISN-RESNVINVDLNDLYEFDPSDTQLLHNIESNAKRFVELFSQ----CA 107
Query: 513 KAIKPKPIINENFQGSIQPIILIDKVNQNENI 608
A+ P P + N++ + +I+ +V +NENI
Sbjct: 108 DALMPPPTVEINYRNEVLDVIMQQRVQRNENI 139
>sp|Q98QL0|RNR_MYCPU Ribonuclease R (RNase R) (VacB protein homolog)
Length = 725
Score = 31.2 bits (69), Expect = 3.4
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 5/95 (5%)
Frame = +3
Query: 375 NLSNFNDDTILSI-----DQFEFTDLQDPFSTEKSKIFDKELISQKQSTIVKAIKPKPII 539
N+ DD IL + DQ + + ST KS + +++ +K TI+ P+ ++
Sbjct: 161 NIDVEEDDVILVVVEKIVDQKIYVNFVKKVSTLKSNFYQIDIVLEKSKTIIDF--PEDVL 218
Query: 540 NENFQGSIQPIILIDKVNQNENIKSTKDKLSSTID 644
+E+ ++ +I+K QN K +DKL TID
Sbjct: 219 DES---ALIEDHVIEKDYQNR--KDLRDKLIITID 248
>sp|Q8XMJ8|ARLY_CLOPE Argininosuccinate lyase (Arginosuccinase) (ASAL)
Length = 466
Score = 30.8 bits (68), Expect = 4.5
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 24/122 (19%)
Frame = +3
Query: 363 LKMDNLSNFNDDTIL-SIDQFEFTDLQDPFSTEKSKIFDK------ELISQKQS------ 503
L M +LS F+++ I+ S D+F+F +L D +ST S + K EL+ K
Sbjct: 243 LLMMHLSRFSEEIIIWSTDEFKFIELDDSYSTGSSIMPQKKNPDVAELVRGKTGRVYGDL 302
Query: 504 -TIVKAIKPKPIINEN---------FQGSIQPIILIDKVN-QNENIKSTKDKLSSTIDSG 650
T++ +K P+ F G ++ I N + +K K + ++ SG
Sbjct: 303 MTLLTVMKGLPLAYNKDMQEDKEALFDGLDTTLLSIKTFNGMIKTMKINKSLMKTSASSG 362
Query: 651 FT 656
FT
Sbjct: 363 FT 364
>sp|Q9R0X5|RPGR_MOUSE X-linked retinitis pigmentosa GTPase regulator (mRpgr)
Length = 1001
Score = 30.4 bits (67), Expect = 5.9
Identities = 34/139 (24%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Frame = +3
Query: 378 LSNFNDDTILS-IDQFE----FTDLQDPFSTEKSKIFDKELISQKQSTIVKAIKPKPIIN 542
L F+D+ + + +DQ E FTD + S + K D+E++S+K++ +++ K I
Sbjct: 576 LEAFSDEEVGNGLDQVEEPRVFTDGKGLQSRQVGKESDEEIVSEKKTEVMEVADVKK-IR 634
Query: 543 ENFQGSIQPIILIDKVNQNENIKS--TKDKLSSTIDSGFTMTDGFYANNFESTDKTNIFK 716
E+ + S + D ++ N +S KD S MT F+S +T + +
Sbjct: 635 ESEENSKSDSLFDDLPDKTMNSESEDNKDIAEERRSSEQNMT-------FDS--ETELVE 685
Query: 717 QPDFFINNQPYNIKIDADK 773
+PD ++ + +N + A++
Sbjct: 686 EPDSYMECERHNEQDSAEE 704
>sp|P09612|VGLM_BUNL7 M polyprotein precursor [Contains: Glycoprotein G2; Nonstructural
protein NS-M; Glycoprotein G1]
Length = 1441
Score = 30.4 bits (67), Expect = 5.9
Identities = 23/82 (28%), Positives = 43/82 (52%)
Frame = +3
Query: 414 DQFEFTDLQDPFSTEKSKIFDKELISQKQSTIVKAIKPKPIINENFQGSIQPIILIDKVN 593
D+F +++LQ + +K++ +S +TI I PK I N N+Q S I ID V+
Sbjct: 868 DKFYYSELQKDY--DKTQDIGHYCLSPGCTTIRYPINPKHISNCNWQVSRSSIAKID-VH 924
Query: 594 QNENIKSTKDKLSSTIDSGFTM 659
E+I+ K ++ + + ++
Sbjct: 925 NVEDIEQYKKAITQKLQTSLSL 946
>sp|P42694|HELZ_HUMAN Probable helicase with zinc-finger domain
Length = 1942
Score = 30.4 bits (67), Expect = 5.9
Identities = 19/88 (21%), Positives = 39/88 (44%)
Frame = +3
Query: 399 TILSIDQFEFTDLQDPFSTEKSKIFDKELISQKQSTIVKAIKPKPIINENFQGSIQPIIL 578
TI+ + E TDL EKS + ++ +++ K + N+Q + ++
Sbjct: 412 TIIDFEPNETTDL------EKSLLIRYQIPLSADQLFTQSVLDKSLTKSNYQSRLHDLLY 465
Query: 579 IDKVNQNENIKSTKDKLSSTIDSGFTMT 662
I+++ Q + I K+ I + F +T
Sbjct: 466 IEEIAQYKEISKFNLKVQLQILASFMLT 493
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,121,266
Number of Sequences: 369166
Number of extensions: 1165929
Number of successful extensions: 3502
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3501
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7570361805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)