Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02959
(843 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q86YS3|RFIP4_HUMAN Rab11-family interacting protein 4 (R... 43 0.001
sp|O75154|RFIP3_HUMAN Rab11 family-interacting protein 3 (R... 42 0.003
sp|Q8BQP8|RFIP4_MOUSE Rab11-family interacting protein 4 (R... 39 0.018
sp|P53913|YNN3_YEAST Hypothetical 20.0 kDa protein in FPR1-... 38 0.040
sp|P40457|MLP2_YEAST Protein MLP2 (Myosin-like protein 2) 35 0.34
sp|O29710|Y540_ARCFU Hypothetical protein AF0540 precursor 35 0.34
sp|Q899S2|TRME_CLOTE tRNA modification GTPase trmE 35 0.34
sp|O62479|SAS6_CAEEL Spindle assembly abnormal protein 6 34 0.44
sp|P82094|TMF1_HUMAN TATA element modulatory factor (TMF) 34 0.58
sp|Q66GS9|CEP4_HUMAN Centrosomal protein 4 (Centrosomal pro... 34 0.58
>sp|Q86YS3|RFIP4_HUMAN Rab11-family interacting protein 4 (Rab11-FIP4)
Length = 637
Score = 43.1 bits (100), Expect = 0.001
Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 15/168 (8%)
Frame = +1
Query: 250 TNLKLSTELQTIKHISPSKSPIRRSFTTEPSVTLRQRTKSVIES---------PIKTDDR 402
T+L+L E+ K + R F E R+ T+ +IE K D
Sbjct: 464 TSLRLKDEMDLYKRMMDKLRQNRLEFQKE-----REATQELIEDLRKELEHLQMYKLDCE 518
Query: 403 RSGQLTIVECQNGKLRSDAKESESSRLVQILTMENRNLVERIAHLE----TVGFYQRQKL 570
R G+ G+ + A+E E V+ L EN L ++ L ++ Y+ + L
Sbjct: 519 RPGRGRSASSGLGEFNARAREVELEHEVKRLKQENYKLRDQNDDLNGQILSLSLYEAKNL 578
Query: 571 EAAN--CLSLAAEMEQLNVDELKKALMVERETVKNLQKYMETLTNKLL 708
AA SLAAE++ + DEL +AL + E L++YM+ + +L
Sbjct: 579 FAAQTKAQSLAAEIDTASRDELMEALKEQEEINFRLRQYMDKIILAIL 626
>sp|O75154|RFIP3_HUMAN Rab11 family-interacting protein 3 (Rab11-FIP3) (EF hands-containing
Rab-interacting protein) (Eferin)
Length = 756
Score = 41.6 bits (96), Expect = 0.003
Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 11/157 (7%)
Frame = +1
Query: 256 LKLSTELQTIKHISPSKSPIRRSFTTEPSVT------LRQRTKSVIESPIKTDDRRSGQL 417
L+LS E + + + S R F + T LR++ + + ++ + RR G+
Sbjct: 588 LRLSEEQENKRRMGDRLSHERHQFQRDKEATQELIEDLRKQLEHLQLLKLEAEQRR-GRS 646
Query: 418 TIVECQNGKLRSDAKESESSRLVQILTMENRNLVERIAHLE----TVGFYQRQKL-EAAN 582
+ + Q + S A+ESE + V+ L +NRNL E+ L T+ + L A
Sbjct: 647 SSMGLQ--EYHSRARESELEQEVRRLKQDNRNLKEQNEELNGQIITLSIQGAKSLFSTAF 704
Query: 583 CLSLAAEMEQLNVDELKKALMVERETVKNLQKYMETL 693
SLAAE+ ++ DEL +A+ + E LQ Y++ +
Sbjct: 705 SESLAAEISSVSRDELMEAIQKQEEINFRLQDYIDRI 741
>sp|Q8BQP8|RFIP4_MOUSE Rab11-family interacting protein 4 (Rab11-FIP4)
Length = 635
Score = 38.9 bits (89), Expect = 0.018
Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 16/169 (9%)
Frame = +1
Query: 250 TNLKLSTELQTIKHISPSKSPIRRSFTTEPSVTLRQRTKSVIESPIKTDDRRSGQLTIVE 429
T+L+L E+ K + R F E R+ T+ +IE + + Q+ ++
Sbjct: 463 TSLRLKDEMDLYKRMMDKLRQNRLEFQKE-----REATQELIEDLRRELEHL--QMYKLD 515
Query: 430 CQN----------GKLRSDAKESESSRLVQILTMENRNLVERIAHLE----TVGFYQRQK 567
C+ G+ + A+E E V+ L EN L ++ L ++ Y+ +
Sbjct: 516 CERPGRGRSSSGLGEFNARAREVELEHEVKRLKQENHKLRDQNDDLNGQILSLSLYEAKN 575
Query: 568 LEAAN--CLSLAAEMEQLNVDELKKALMVERETVKNLQKYMETLTNKLL 708
L A SLAAE++ + DEL +AL + E L++YM+ + +L
Sbjct: 576 LFATQTKAQSLAAEIDTASRDELMEALKEQEEINFRLRQYMDKIILAIL 624
>sp|P53913|YNN3_YEAST Hypothetical 20.0 kDa protein in FPR1-TOM22 intergenic region
Length = 173
Score = 37.7 bits (86), Expect = 0.040
Identities = 28/91 (30%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Frame = +1
Query: 442 KLRSDA--KESESSRLVQILTMENRNLVERIAHLETVGFYQRQK---LEAANCLSLAAEM 606
+LRS+A K+ + + LV+ +R R++ E + FYQ+ K L+ L+ ++
Sbjct: 57 QLRSNAISKQKQYNGLVR-----DRESFTRLSK-EDLEFYQKSKNELLKKEKELNNYLDV 110
Query: 607 EQLNVDELKKALMVERETVKNLQKYMETLTN 699
+ +N ++ KKAL++E ++ N +KY+ET T+
Sbjct: 111 KAINFEKKKKALLMENDSTTNTEKYLETGTS 141
>sp|P40457|MLP2_YEAST Protein MLP2 (Myosin-like protein 2)
Length = 1679
Score = 34.7 bits (78), Expect = 0.34
Identities = 44/180 (24%), Positives = 74/180 (41%), Gaps = 25/180 (13%)
Frame = +1
Query: 244 IQTNLKLSTELQTIKHISPSKSPIRRSFTTEPSVTLRQRTKSV---IESPIKTDDRRSGQ 414
++ LK STEL ++ +S +K R T+ LRQ+ I S +K + Q
Sbjct: 412 LEHELKRSTEL--LETVSLTKRKQEREITS-----LRQKINGCEANIHSLVKQRLDLARQ 464
Query: 415 LTIVECQNGKLRSDAKESESSRLVQILT-MENRNLV----------ERIAHLETVGFYQR 561
+ ++ ++ A L+ + +E+ N+V ER+ V Q
Sbjct: 465 VKLLLLNTSAIQETASPLSQDELISLRKILESSNIVNENDSQAIITERLVEFSNVNELQE 524
Query: 562 QKLEAANCLS-LAAEMEQLNVDELKKALMVERETVK----------NLQKYMETLTNKLL 708
+ +E NC+ LA ++E + K VE +T+K N+ MET N LL
Sbjct: 525 KNVELLNCIRILADKLENYEGKQDKTLQKVENQTIKEAKDAIIELENINAKMETRINILL 584
>sp|O29710|Y540_ARCFU Hypothetical protein AF0540 precursor
Length = 228
Score = 34.7 bits (78), Expect = 0.34
Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 8/152 (5%)
Frame = +1
Query: 274 LQTIKHISPSKSPIRRSFTTEPSVTLRQRTKSVIES-PIKTDDRRSGQLTIVECQNGKL- 447
LQ + P + I+ + + + + RT + + IK + + + ++VE +N L
Sbjct: 42 LQNSSTLPPGEYGIKITHSCLGNEQIEIRTNTTTDVITIKVEKDPNPEESLVEAENEVLS 101
Query: 448 ------RSDAKESESSRLVQILTMENRNLVERIAHLETVGFYQRQKLEAANCLSLAAEME 609
R + + S +L ++L N +L +++ +L T +++LE S A
Sbjct: 102 LRKEVQRLEGEVSYYKKLFEVLNKINVDLYDKLQNLATENDELKRELELYK--SKAGNYS 159
Query: 610 QLNVDELKKALMVERETVKNLQKYMETLTNKL 705
QL +DEL+ L ETV+ LQ E L L
Sbjct: 160 QL-IDELRLELSKMNETVRQLQATNEDLQANL 190
>sp|Q899S2|TRME_CLOTE tRNA modification GTPase trmE
Length = 459
Score = 34.7 bits (78), Expect = 0.34
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 26/148 (17%)
Frame = +1
Query: 292 ISPSKSPIRRSFTTEPSVTLRQR-----TKSVIESPIKTDDR--RSGQLTIVECQNGKL- 447
IS K+P RSFT E +V + TK + + IK R G+ T NG++
Sbjct: 72 ISYMKAP--RSFTAEDTVEINCHGGVTPTKKIFQEVIKAGVRVAEPGEFTKRAFLNGRID 129
Query: 448 -----------RSDAKESESSRLVQIL-------TMENRNLVERIAHLETVGFYQRQKLE 573
RS + S S + Q + + NL+E IAH+E Y + LE
Sbjct: 130 LTQAEAVIDIIRSKTELSMKSAVSQSIGKVSEEINVLRENLIETIAHIEATVDYPEEDLE 189
Query: 574 AANCLSLAAEMEQLNVDELKKALMVERE 657
+ ++E++ ++EL++ L E
Sbjct: 190 EITSSQVQEKIEKI-IEELERLLDTSEE 216
>sp|O62479|SAS6_CAEEL Spindle assembly abnormal protein 6
Length = 492
Score = 34.3 bits (77), Expect = 0.44
Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Frame = +1
Query: 259 KLSTELQTI-KHISPSKSPIRRSFTTEPSVTLRQRTKSVIESPIKTDDRRSGQLTIV--- 426
KL EL T +++ + ++R+ + +L R +E+ +K D LT
Sbjct: 307 KLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTETIGI 366
Query: 427 ---ECQNGKLRSDAKESESSRLVQILTMENRNLVERIAHLETVGF 552
E +N KL K +E+ + L+MEN NL E+IAH F
Sbjct: 367 LRKELENEKL----KAAENMDSFEKLSMENENLKEKIAHYRAQRF 407
>sp|P82094|TMF1_HUMAN TATA element modulatory factor (TMF)
Length = 1093
Score = 33.9 bits (76), Expect = 0.58
Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Frame = +1
Query: 412 QLTIVECQNGKLRSDAK------ESESSRLVQILTMENRNLVE----RIAHLETVGFYQR 561
Q++ +E QN LR + ESE +RL ++ NR VE + ++ T+ ++
Sbjct: 827 QMSSMESQNSLLRQENSRFQAQLESEKNRLCKLEDENNRYQVELENLKDEYVRTLEETRK 886
Query: 562 QKLEAANCLSLAAEMEQLNVDELKKALMVERETVKNLQK 678
+K L+ EME++ V++ +K + +ET+K ++
Sbjct: 887 EK----TLLNSQLEMERMKVEQERKKAIFTQETIKEKER 921
>sp|Q66GS9|CEP4_HUMAN Centrosomal protein 4 (Centrosomal protein of 135 kDa) (Cep135
protein)
Length = 1140
Score = 33.9 bits (76), Expect = 0.58
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Frame = +1
Query: 445 LRSDAKESESSRLVQILTMENRNLVERIAHLETVGFYQRQKLEAA----NCLSLAAEMEQ 612
L KE S L +I+ E L E++ H+E V + + +LE C++ E E+
Sbjct: 566 LMEKEKELALSDLRRIMA-EKEALREKLEHIEEVSLFGKSELEKTIEHLTCVNHQLESEK 624
Query: 613 LNVDELKKALMVERETVKNLQKYMETLTNK 702
ELK +++ +ET+++L+ ++ K
Sbjct: 625 Y---ELKSKVLIMKETIESLENKLKVQAQK 651
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,969,558
Number of Sequences: 369166
Number of extensions: 1793593
Number of successful extensions: 5030
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4930
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8245425915
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)