Planaria EST Database


DrC_02959

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02959
         (843 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q86YS3|RFIP4_HUMAN  Rab11-family interacting protein 4 (R...    43   0.001
sp|O75154|RFIP3_HUMAN  Rab11 family-interacting protein 3 (R...    42   0.003
sp|Q8BQP8|RFIP4_MOUSE  Rab11-family interacting protein 4 (R...    39   0.018
sp|P53913|YNN3_YEAST  Hypothetical 20.0 kDa protein in FPR1-...    38   0.040
sp|P40457|MLP2_YEAST  Protein MLP2 (Myosin-like protein 2)         35   0.34 
sp|O29710|Y540_ARCFU  Hypothetical protein AF0540 precursor        35   0.34 
sp|Q899S2|TRME_CLOTE  tRNA modification GTPase trmE                35   0.34 
sp|O62479|SAS6_CAEEL  Spindle assembly abnormal protein 6          34   0.44 
sp|P82094|TMF1_HUMAN  TATA element modulatory factor (TMF)         34   0.58 
sp|Q66GS9|CEP4_HUMAN  Centrosomal protein 4 (Centrosomal pro...    34   0.58 
>sp|Q86YS3|RFIP4_HUMAN Rab11-family interacting protein 4 (Rab11-FIP4)
          Length = 637

 Score = 43.1 bits (100), Expect = 0.001
 Identities = 45/168 (26%), Positives = 73/168 (43%), Gaps = 15/168 (8%)
 Frame = +1

Query: 250 TNLKLSTELQTIKHISPSKSPIRRSFTTEPSVTLRQRTKSVIES---------PIKTDDR 402
           T+L+L  E+   K +       R  F  E     R+ T+ +IE            K D  
Sbjct: 464 TSLRLKDEMDLYKRMMDKLRQNRLEFQKE-----REATQELIEDLRKELEHLQMYKLDCE 518

Query: 403 RSGQLTIVECQNGKLRSDAKESESSRLVQILTMENRNLVERIAHLE----TVGFYQRQKL 570
           R G+        G+  + A+E E    V+ L  EN  L ++   L     ++  Y+ + L
Sbjct: 519 RPGRGRSASSGLGEFNARAREVELEHEVKRLKQENYKLRDQNDDLNGQILSLSLYEAKNL 578

Query: 571 EAAN--CLSLAAEMEQLNVDELKKALMVERETVKNLQKYMETLTNKLL 708
            AA     SLAAE++  + DEL +AL  + E    L++YM+ +   +L
Sbjct: 579 FAAQTKAQSLAAEIDTASRDELMEALKEQEEINFRLRQYMDKIILAIL 626
>sp|O75154|RFIP3_HUMAN Rab11 family-interacting protein 3 (Rab11-FIP3) (EF hands-containing
            Rab-interacting protein) (Eferin)
          Length = 756

 Score = 41.6 bits (96), Expect = 0.003
 Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 11/157 (7%)
 Frame = +1

Query: 256  LKLSTELQTIKHISPSKSPIRRSFTTEPSVT------LRQRTKSVIESPIKTDDRRSGQL 417
            L+LS E +  + +    S  R  F  +   T      LR++ + +    ++ + RR G+ 
Sbjct: 588  LRLSEEQENKRRMGDRLSHERHQFQRDKEATQELIEDLRKQLEHLQLLKLEAEQRR-GRS 646

Query: 418  TIVECQNGKLRSDAKESESSRLVQILTMENRNLVERIAHLE----TVGFYQRQKL-EAAN 582
            + +  Q  +  S A+ESE  + V+ L  +NRNL E+   L     T+     + L   A 
Sbjct: 647  SSMGLQ--EYHSRARESELEQEVRRLKQDNRNLKEQNEELNGQIITLSIQGAKSLFSTAF 704

Query: 583  CLSLAAEMEQLNVDELKKALMVERETVKNLQKYMETL 693
              SLAAE+  ++ DEL +A+  + E    LQ Y++ +
Sbjct: 705  SESLAAEISSVSRDELMEAIQKQEEINFRLQDYIDRI 741
>sp|Q8BQP8|RFIP4_MOUSE Rab11-family interacting protein 4 (Rab11-FIP4)
          Length = 635

 Score = 38.9 bits (89), Expect = 0.018
 Identities = 42/169 (24%), Positives = 75/169 (44%), Gaps = 16/169 (9%)
 Frame = +1

Query: 250 TNLKLSTELQTIKHISPSKSPIRRSFTTEPSVTLRQRTKSVIESPIKTDDRRSGQLTIVE 429
           T+L+L  E+   K +       R  F  E     R+ T+ +IE   +  +    Q+  ++
Sbjct: 463 TSLRLKDEMDLYKRMMDKLRQNRLEFQKE-----REATQELIEDLRRELEHL--QMYKLD 515

Query: 430 CQN----------GKLRSDAKESESSRLVQILTMENRNLVERIAHLE----TVGFYQRQK 567
           C+           G+  + A+E E    V+ L  EN  L ++   L     ++  Y+ + 
Sbjct: 516 CERPGRGRSSSGLGEFNARAREVELEHEVKRLKQENHKLRDQNDDLNGQILSLSLYEAKN 575

Query: 568 LEAAN--CLSLAAEMEQLNVDELKKALMVERETVKNLQKYMETLTNKLL 708
           L A      SLAAE++  + DEL +AL  + E    L++YM+ +   +L
Sbjct: 576 LFATQTKAQSLAAEIDTASRDELMEALKEQEEINFRLRQYMDKIILAIL 624
>sp|P53913|YNN3_YEAST Hypothetical 20.0 kDa protein in FPR1-TOM22 intergenic region
          Length = 173

 Score = 37.7 bits (86), Expect = 0.040
 Identities = 28/91 (30%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
 Frame = +1

Query: 442 KLRSDA--KESESSRLVQILTMENRNLVERIAHLETVGFYQRQK---LEAANCLSLAAEM 606
           +LRS+A  K+ + + LV+     +R    R++  E + FYQ+ K   L+    L+   ++
Sbjct: 57  QLRSNAISKQKQYNGLVR-----DRESFTRLSK-EDLEFYQKSKNELLKKEKELNNYLDV 110

Query: 607 EQLNVDELKKALMVERETVKNLQKYMETLTN 699
           + +N ++ KKAL++E ++  N +KY+ET T+
Sbjct: 111 KAINFEKKKKALLMENDSTTNTEKYLETGTS 141
>sp|P40457|MLP2_YEAST Protein MLP2 (Myosin-like protein 2)
          Length = 1679

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 44/180 (24%), Positives = 74/180 (41%), Gaps = 25/180 (13%)
 Frame = +1

Query: 244 IQTNLKLSTELQTIKHISPSKSPIRRSFTTEPSVTLRQRTKSV---IESPIKTDDRRSGQ 414
           ++  LK STEL  ++ +S +K    R  T+     LRQ+       I S +K     + Q
Sbjct: 412 LEHELKRSTEL--LETVSLTKRKQEREITS-----LRQKINGCEANIHSLVKQRLDLARQ 464

Query: 415 LTIVECQNGKLRSDAKESESSRLVQILT-MENRNLV----------ERIAHLETVGFYQR 561
           + ++      ++  A       L+ +   +E+ N+V          ER+     V   Q 
Sbjct: 465 VKLLLLNTSAIQETASPLSQDELISLRKILESSNIVNENDSQAIITERLVEFSNVNELQE 524

Query: 562 QKLEAANCLS-LAAEMEQLNVDELKKALMVERETVK----------NLQKYMETLTNKLL 708
           + +E  NC+  LA ++E     + K    VE +T+K          N+   MET  N LL
Sbjct: 525 KNVELLNCIRILADKLENYEGKQDKTLQKVENQTIKEAKDAIIELENINAKMETRINILL 584
>sp|O29710|Y540_ARCFU Hypothetical protein AF0540 precursor
          Length = 228

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 38/152 (25%), Positives = 69/152 (45%), Gaps = 8/152 (5%)
 Frame = +1

Query: 274 LQTIKHISPSKSPIRRSFTTEPSVTLRQRTKSVIES-PIKTDDRRSGQLTIVECQNGKL- 447
           LQ    + P +  I+ + +   +  +  RT +  +   IK +   + + ++VE +N  L 
Sbjct: 42  LQNSSTLPPGEYGIKITHSCLGNEQIEIRTNTTTDVITIKVEKDPNPEESLVEAENEVLS 101

Query: 448 ------RSDAKESESSRLVQILTMENRNLVERIAHLETVGFYQRQKLEAANCLSLAAEME 609
                 R + + S   +L ++L   N +L +++ +L T     +++LE     S A    
Sbjct: 102 LRKEVQRLEGEVSYYKKLFEVLNKINVDLYDKLQNLATENDELKRELELYK--SKAGNYS 159

Query: 610 QLNVDELKKALMVERETVKNLQKYMETLTNKL 705
           QL +DEL+  L    ETV+ LQ   E L   L
Sbjct: 160 QL-IDELRLELSKMNETVRQLQATNEDLQANL 190
>sp|Q899S2|TRME_CLOTE tRNA modification GTPase trmE
          Length = 459

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 26/148 (17%)
 Frame = +1

Query: 292 ISPSKSPIRRSFTTEPSVTLRQR-----TKSVIESPIKTDDR--RSGQLTIVECQNGKL- 447
           IS  K+P  RSFT E +V +        TK + +  IK   R    G+ T     NG++ 
Sbjct: 72  ISYMKAP--RSFTAEDTVEINCHGGVTPTKKIFQEVIKAGVRVAEPGEFTKRAFLNGRID 129

Query: 448 -----------RSDAKESESSRLVQIL-------TMENRNLVERIAHLETVGFYQRQKLE 573
                      RS  + S  S + Q +        +   NL+E IAH+E    Y  + LE
Sbjct: 130 LTQAEAVIDIIRSKTELSMKSAVSQSIGKVSEEINVLRENLIETIAHIEATVDYPEEDLE 189

Query: 574 AANCLSLAAEMEQLNVDELKKALMVERE 657
                 +  ++E++ ++EL++ L    E
Sbjct: 190 EITSSQVQEKIEKI-IEELERLLDTSEE 216
>sp|O62479|SAS6_CAEEL Spindle assembly abnormal protein 6
          Length = 492

 Score = 34.3 bits (77), Expect = 0.44
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
 Frame = +1

Query: 259 KLSTELQTI-KHISPSKSPIRRSFTTEPSVTLRQRTKSVIESPIKTDDRRSGQLTIV--- 426
           KL  EL T  +++  +   ++R+   +   +L  R    +E+ +K  D     LT     
Sbjct: 307 KLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTETIGI 366

Query: 427 ---ECQNGKLRSDAKESESSRLVQILTMENRNLVERIAHLETVGF 552
              E +N KL    K +E+    + L+MEN NL E+IAH     F
Sbjct: 367 LRKELENEKL----KAAENMDSFEKLSMENENLKEKIAHYRAQRF 407
>sp|P82094|TMF1_HUMAN TATA element modulatory factor (TMF)
          Length = 1093

 Score = 33.9 bits (76), Expect = 0.58
 Identities = 26/99 (26%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
 Frame = +1

Query: 412  QLTIVECQNGKLRSDAK------ESESSRLVQILTMENRNLVE----RIAHLETVGFYQR 561
            Q++ +E QN  LR +        ESE +RL ++    NR  VE    +  ++ T+   ++
Sbjct: 827  QMSSMESQNSLLRQENSRFQAQLESEKNRLCKLEDENNRYQVELENLKDEYVRTLEETRK 886

Query: 562  QKLEAANCLSLAAEMEQLNVDELKKALMVERETVKNLQK 678
            +K      L+   EME++ V++ +K  +  +ET+K  ++
Sbjct: 887  EK----TLLNSQLEMERMKVEQERKKAIFTQETIKEKER 921
>sp|Q66GS9|CEP4_HUMAN Centrosomal protein 4 (Centrosomal protein of 135 kDa) (Cep135
           protein)
          Length = 1140

 Score = 33.9 bits (76), Expect = 0.58
 Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
 Frame = +1

Query: 445 LRSDAKESESSRLVQILTMENRNLVERIAHLETVGFYQRQKLEAA----NCLSLAAEMEQ 612
           L    KE   S L +I+  E   L E++ H+E V  + + +LE       C++   E E+
Sbjct: 566 LMEKEKELALSDLRRIMA-EKEALREKLEHIEEVSLFGKSELEKTIEHLTCVNHQLESEK 624

Query: 613 LNVDELKKALMVERETVKNLQKYMETLTNK 702
               ELK  +++ +ET+++L+  ++    K
Sbjct: 625 Y---ELKSKVLIMKETIESLENKLKVQAQK 651
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,969,558
Number of Sequences: 369166
Number of extensions: 1793593
Number of successful extensions: 5030
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4930
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8245425915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)