Planaria EST Database


DrC_02958

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02958
         (884 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q26474|LACH_SCHAM  Lachesin precursor                           80   1e-14
sp|P15364|AMAL_DROME  Amalgam protein precursor                    72   3e-12
sp|Q24372|LACH_DROME  Lachesin precursor                           68   3e-11
sp|P35969|VGFR1_MOUSE  Vascular endothelial growth factor re...    61   5e-09
sp|P53767|VGFR1_RAT  Vascular endothelial growth factor rece...    60   1e-08
sp|P17948|VGFR1_HUMAN  Vascular endothelial growth factor re...    59   2e-08
sp|Q810U3|NFASC_MOUSE  Neurofascin precursor                       58   3e-08
sp|Q98892|OBCAM_CHICK  Opioid-binding protein/cell adhesion ...    58   3e-08
sp|P97685|NFASC_RAT  Neurofascin precursor                         58   4e-08
sp|O94856|NFASC_HUMAN  Neurofascin precursor                       57   5e-08
>sp|Q26474|LACH_SCHAM Lachesin precursor
          Length = 349

 Score = 79.7 bits (195), Expect = 1e-14
 Identities = 54/164 (32%), Positives = 87/164 (53%), Gaps = 3/164 (1%)
 Frame = +2

Query: 293 YQLVVRDVIDSDSKRYQCKIDLAGFAESMKPFAIGLIILQKAPYITP--IQSQIVEEGKA 466
           Y L ++D+ ++D+  YQC++ +     + K  A   + +++ P I+    +S +V EG+A
Sbjct: 93  YTLQIKDIQETDAGFYQCQVIIG---LNNKITAEVDLQVRRPPVISDNSTRSLVVSEGQA 149

Query: 467 LQLDCKANGSPPPRVSWVKANGQAFPLPGSPQRVQNTTLYLPKITRYDRGVFRCHAVNNV 646
           ++L+C A G P PRVSW + N    P  GS  R     L + +I + DRG + C A N V
Sbjct: 150 VRLECYAGGYPAPRVSWRRENNAILPTGGSIYR--GNVLKISRIGKEDRGTYYCVAENGV 207

Query: 647 GLAGEYDVMVEVTFKPRVRQAR-RMGAYAQMANQNYEIMIECIV 775
           G     ++ VEV F P +   R R+G   Q     Y++ +EC V
Sbjct: 208 GKGARRNIAVEVEFPPVITVPRPRLGQALQ-----YDMDLECHV 246

 Score = 33.5 bits (75), Expect = 0.81
 Identities = 34/152 (22%), Positives = 63/152 (41%), Gaps = 19/152 (12%)
 Frame = +2

Query: 398 LIILQKAPYITPI-QSQIVEEGKALQLDCKANGSPPPRVSWVKA--NGQAFPLP---GSP 559
           ++  Q+ P I+ I Q QI + G  ++L+C    +    V W+K   N Q  PLP   GS 
Sbjct: 15  VVYAQRTPTISYISQEQIKDIGGTVELECSVQYAQDYPVLWMKVDRNRQVDPLPISTGSS 74

Query: 560 QRVQNT-------------TLYLPKITRYDRGVFRCHAVNNVGLAGEYDVMVEVTFKPRV 700
             ++++             TL +  I   D G ++C  +  +GL  +    V++  + R 
Sbjct: 75  LIIRDSRFALRYDTASSTYTLQIKDIQETDAGFYQCQVI--IGLNNKITAEVDLQVR-RP 131

Query: 701 RQARRMGAYAQMANQNYEIMIECIVNGLSRSR 796
                    + + ++   + +EC   G    R
Sbjct: 132 PVISDNSTRSLVVSEGQAVRLECYAGGYPAPR 163

 Score = 33.5 bits (75), Expect = 0.81
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
 Frame = +2

Query: 458 GKALQ----LDCKANGSPPPRVSWVK-----ANGQAFPLP--GSPQRVQNTTLYLPKITR 604
           G+ALQ    L+C     PPP ++W+K     +N Q + +    +     +TT  +  I +
Sbjct: 233 GQALQYDMDLECHVEAYPPPAITWLKDETVLSNNQHYSISHFATADEFTDTTRVI-TIEK 291

Query: 605 YDRGVFRCHAVNNVGLAGE 661
              G ++C A N +G A E
Sbjct: 292 RQYGKYQCKAANKLGEARE 310
>sp|P15364|AMAL_DROME Amalgam protein precursor
          Length = 333

 Score = 71.6 bits (174), Expect = 3e-12
 Identities = 48/167 (28%), Positives = 83/167 (49%), Gaps = 4/167 (2%)
 Frame = +2

Query: 293 YQLVVRDVIDSDSKRYQCKIDLAGFAESMKPFAIGL----IILQKAPYITPIQSQIVEEG 460
           Y   ++++  SD   Y+C++ ++   +  K  ++ +    +I +  P     +S +V EG
Sbjct: 100 YTFRIQNIEVSDMGPYECQVLVSATEKVTKKLSLQIKTPPVIAENTP-----KSTLVTEG 154

Query: 461 KALQLDCKANGSPPPRVSWVKANGQAFPLPGSPQRVQNTTLYLPKITRYDRGVFRCHAVN 640
           + L+L C ANG P P +SW + +    P  G    +   TL +  + R DRG + C A N
Sbjct: 155 QNLELTCHANGFPKPTISWAREHNAVMPAGG--HLLAEPTLRIRSVHRMDRGGYYCIAQN 212

Query: 641 NVGLAGEYDVMVEVTFKPRVRQARRMGAYAQMANQNYEIMIECIVNG 781
             G   +  + VEV F+P++  A +    AQM + + E  +EC V G
Sbjct: 213 GEGQPDKRLIRVEVEFRPQI--AVQRPKIAQMVSHSAE--LECSVQG 255

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 44/174 (25%), Positives = 67/174 (38%), Gaps = 11/174 (6%)
 Frame = +2

Query: 167 GTTLELPVRKDTNGNDKYIVNFIHKRPSYVPTMPGQSQDVWNYQLVVRDVIDSDSKRYQC 346
           G  LEL      NG  K  +++  +  +    MP     +    L +R V   D   Y C
Sbjct: 154 GQNLELTCH--ANGFPKPTISWAREHNA---VMPAGGHLLAEPTLRIRSVHRMDRGGYYC 208

Query: 347 KIDLAGFAESMKPFAIGLIILQKAPYITPIQSQIVEE-GKALQLDCKANGSPPPRVSWVK 523
              +A   E      +  + ++  P I   + +I +    + +L+C   G P P V W K
Sbjct: 209 ---IAQNGEGQPDKRLIRVEVEFRPQIAVQRPKIAQMVSHSAELECSVQGYPAPTVVWHK 265

Query: 524 ANGQAFPLPGS-PQRVQNT---------TLYLPKITRYDRGVFRCHAVNNVGLA 655
            NG   PL  S    V NT          L +  +   D G + C+A N +G A
Sbjct: 266 -NG--VPLQSSRHHEVANTASSSGTTTSVLRIDSVGEEDFGDYYCNATNKLGHA 316
>sp|Q24372|LACH_DROME Lachesin precursor
          Length = 359

 Score = 68.2 bits (165), Expect = 3e-11
 Identities = 45/162 (27%), Positives = 80/162 (49%), Gaps = 3/162 (1%)
 Frame = +2

Query: 293 YQLVVRDVIDSDSKRYQCKIDLAGFAESMKPFAIGLIILQKAPYITP--IQSQIVEEGKA 466
           Y+L ++D+ ++D+  Y C++ ++      K  A   + +++ P I+    QS +  EG  
Sbjct: 96  YKLQIKDIQETDAGTYTCQVVISTVH---KVSAEVKLSVRRPPVISDNSTQSVVASEGSE 152

Query: 467 LQLDCKANGSPPPRVSWVKANGQAFPLPGSPQRVQNTTLYLPKITRYDRGVFRCHAVNNV 646
           +Q++C A+G P P ++W + N     LP         TL +  + + DRG + C A N V
Sbjct: 153 VQMECYASGYPTPTITWRRENNAI--LPTDSATYVGNTLRIKSVKKEDRGTYYCVADNGV 210

Query: 647 GLAGEYDVMVEVTFKPRVRQAR-RMGAYAQMANQNYEIMIEC 769
                 ++ VEV F P +   R R+G   Q     Y++ +EC
Sbjct: 211 SKGDRRNINVEVEFAPVITVPRPRLGQALQ-----YDMDLEC 247

 Score = 33.5 bits (75), Expect = 0.81
 Identities = 34/142 (23%), Positives = 56/142 (39%), Gaps = 11/142 (7%)
 Frame = +2

Query: 263 MPGQSQDVWNYQLVVRDVIDSDSKRYQCKIDLAGFAESMKPFAIGLIILQKAPYITPIQS 442
           +P  S       L ++ V   D   Y C  D        +   + +   + AP IT  + 
Sbjct: 177 LPTDSATYVGNTLRIKSVKKEDRGTYYCVADNGVSKGDRRNINVEV---EFAPVITVPRP 233

Query: 443 QIVEEGKALQ----LDCKANGSPPPRVSWVK-----ANGQAFPLP--GSPQRVQNTTLYL 589
           ++   G+ALQ    L+C     PPP + W K     AN Q + +    +     ++TL +
Sbjct: 234 RL---GQALQYDMDLECHIEAYPPPAIVWTKDDIQLANNQHYSISHFATADEYTDSTLRV 290

Query: 590 PKITRYDRGVFRCHAVNNVGLA 655
             + +   G + C A N  G A
Sbjct: 291 ITVEKRQYGDYVCKATNRFGEA 312
>sp|P35969|VGFR1_MOUSE Vascular endothelial growth factor receptor 1 precursor (VEGFR-1)
           (Tyrosine-protein kinase receptor FLT) (FLT-1)
           (Embryonic receptor kinase 2)
          Length = 1333

 Score = 60.8 bits (146), Expect = 5e-09
 Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
 Frame = +2

Query: 299 LVVRDVIDSDSKRYQCKIDLAGFAESMKPFAIGLIILQKAPYITPIQSQI-VEEGKALQL 475
           LV+++V   DS  Y C+       E +      L+   +AP++    S   V    +  L
Sbjct: 622 LVIKNVSLEDSGTYACRARNIYTGEDILRKTEVLVRDSEAPHLLQNLSDYEVSISGSTTL 681

Query: 476 DCKANGSPPPRVSWVKANGQAFPLPGSPQRVQNTTLYLPKITRYDRGVFRCHAVNNVG 649
           DC+A G P P+++W K N +    PG      N+TL++ ++T  D GV+RC A N  G
Sbjct: 682 DCQARGVPAPQITWFKNNHKIQQEPGIILGPGNSTLFIERVTEEDEGVYRCRATNQKG 739

 Score = 30.0 bits (66), Expect = 8.9
 Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 4/116 (3%)
 Frame = +2

Query: 281 DVWNYQLVVRDVIDSDSKRYQCKIDLAGFAESMKPFAIGLIILQKAPYITPIQSQIVEEG 460
           +V++  L + +V   D   Y C++       S + F   + + +K       + Q V+E 
Sbjct: 291 NVFHSVLKINNVESRDKGLYTCRVKSGS---SFQSFNTSVHVYEKGFISVKHRKQPVQET 347

Query: 461 KA----LQLDCKANGSPPPRVSWVKANGQAFPLPGSPQRVQNTTLYLPKITRYDRG 616
            A     +L  K    P P + W+K +G    L  +   V   +L +  +T  D G
Sbjct: 348 TAGRRSYRLSMKVKAFPSPEIVWLK-DGSPATLKSARYLVHGYSLIIKDVTTEDAG 402
>sp|P53767|VGFR1_RAT Vascular endothelial growth factor receptor 1 precursor (VEGFR-1)
           (Tyrosine-protein kinase receptor FLT) (FLT-1)
          Length = 1336

 Score = 59.7 bits (143), Expect = 1e-08
 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 1/119 (0%)
 Frame = +2

Query: 299 LVVRDVIDSDSKRYQCKIDLAGFAESMKPFAIGLIILQKAPYITP-IQSQIVEEGKALQL 475
           LV+++V   DS  Y C+       E +      L+   +AP +   +    V    +  L
Sbjct: 621 LVIKNVSLEDSGTYACRARNIYTGEEILRKTEVLVRDLEAPLLLQNLSDHEVSISGSTTL 680

Query: 476 DCKANGSPPPRVSWVKANGQAFPLPGSPQRVQNTTLYLPKITRYDRGVFRCHAVNNVGL 652
           DC+A G P P+++W K N +    PG      N+TL++ ++T  D GV+RC A N  G+
Sbjct: 681 DCQARGVPAPQITWFKNNHKIQQEPGIILGPGNSTLFIERVTEEDEGVYRCRATNQKGV 739
>sp|P17948|VGFR1_HUMAN Vascular endothelial growth factor receptor 1 precursor (VEGFR-1)
           (Vascular permeability factor receptor)
           (Tyrosine-protein kinase receptor FLT) (Flt-1)
           (Tyrosine-protein kinase FRT) (Fms-like tyrosine kinase
           1)
          Length = 1338

 Score = 58.9 bits (141), Expect = 2e-08
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 1/118 (0%)
 Frame = +2

Query: 299 LVVRDVIDSDSKRYQCKIDLAGFAESMKPFAIGLIILQKAPYITP-IQSQIVEEGKALQL 475
           L + +V   DS  Y C+       E +       I  Q+APY+   +    V    +  L
Sbjct: 621 LTIMNVSLQDSGTYACRARNVYTGEEILQKKEITIRDQEAPYLLRNLSDHTVAISSSTTL 680

Query: 476 DCKANGSPPPRVSWVKANGQAFPLPGSPQRVQNTTLYLPKITRYDRGVFRCHAVNNVG 649
           DC ANG P P+++W K N +    PG      ++TL++ ++T  D GV+ C A N  G
Sbjct: 681 DCHANGVPEPQITWFKNNHKIQQEPGIILGPGSSTLFIERVTEEDEGVYHCKATNQKG 738
>sp|Q810U3|NFASC_MOUSE Neurofascin precursor
          Length = 1240

 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 61/228 (26%), Positives = 94/228 (41%), Gaps = 3/228 (1%)
 Frame = +2

Query: 101 ISETQKARATWYSMDEQKTIAWGTTLELPVRKDTNGNDKYIVNFIHKRPSYVPTMPGQSQ 280
           IS   KA   W    +   +A G    L  R   NGN K  V ++          P  ++
Sbjct: 329 ISVRVKAAPYWLDEPKNLILAPGEDGRLVCR--ANGNPKPTVQWMVNGEPLQSAPPNPNR 386

Query: 281 DVWNYQLVVRDVIDSDSKRYQCKIDLAGFAESMKPFAIGLIILQKAPYITPIQSQIVEE- 457
           +V    ++ RD   S    YQC             F   + +L   P +   ++Q++   
Sbjct: 387 EVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAF---VSVLDVPPRMLSARNQLIRVI 443

Query: 458 -GKALQLDCKANGSPPPRVSWVKANGQAFPLPGSPQRV-QNTTLYLPKITRYDRGVFRCH 631
                +LDC   GSP P + W K NGQ   L G    V +N +L +  I + D+G++ C 
Sbjct: 444 LYNRTRLDCPFFGSPIPTLRWFK-NGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCV 502

Query: 632 AVNNVGLAGEYDVMVEVTFKPRVRQARRMGAYAQMANQNYEIMIECIV 775
           A N +G A E  V +EV    R+ +        Q+A +   + +EC V
Sbjct: 503 ATNILGKA-ENQVRLEVKDPTRIYRMPE----DQVAKRGTTVQLECRV 545

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 40/148 (27%), Positives = 68/148 (45%), Gaps = 6/148 (4%)
 Frame = +2

Query: 287 WNYQLVVRDVIDSDSKRYQCKIDLAGFAESMKPFAIGLIILQKAPYITPIQSQIVEEGKA 466
           +N  L + +V + DS  Y C   LA          I + +     ++   ++ I+  G+ 
Sbjct: 297 FNKALRITNVSEEDSGEYFC---LASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGED 353

Query: 467 LQLDCKANGSPPPRVSWVKANGQAFPLPGSP----QRVQNTTLYLPKITRYDRGVFRCHA 634
            +L C+ANG+P P V W+  NG+  PL  +P    + V   T+         R V++C+ 
Sbjct: 354 GRLVCRANGNPKPTVQWM-VNGE--PLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNT 410

Query: 635 VNNVG--LAGEYDVMVEVTFKPRVRQAR 712
            N  G  LA  +  +++V   PR+  AR
Sbjct: 411 SNEHGYLLANAFVSVLDV--PPRMLSAR 436

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)
 Frame = +2

Query: 440 SQIVEEGKALQLDCKANGSPPPRVSWVKANGQAFPLPGSPQRVQ--NTTLYLPKITRYDR 613
           SQ+V  G  L L+C A+G P P ++W K  G    LP +  + +  N  L +  ++  D 
Sbjct: 255 SQMVLRGMDLLLECIASGVPTPDIAWYKKGGD---LPSNKAKFENFNKALRITNVSEEDS 311

Query: 614 GVFRCHAVNNVG 649
           G + C A N +G
Sbjct: 312 GEYFCLASNKMG 323

 Score = 33.9 bits (76), Expect = 0.62
 Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
 Frame = +2

Query: 407 LQKAPYITP--IQSQIVEEGKALQLDCKANGSPPPRVSWVKANGQAFPLPGSPQ---RVQ 571
           L + P IT   ++  IV+    + ++C+A G+P P   W + N + F +   P+   R +
Sbjct: 37  LTQPPTITKQSVKDHIVDPRDNILIECEAKGNPAPSFHWTR-NSRFFNIAKDPRVSMRRR 95

Query: 572 NTTLYLP-----KITRYDRGVFRCHAVNNVGLAGEYDVMVEVTFKP 694
           + TL +      +   Y+ G ++C A N  G A    + ++V+  P
Sbjct: 96  SGTLVIDFRSGGRPEEYE-GEYQCFARNKFGTALSNRIRLQVSKSP 140
>sp|Q98892|OBCAM_CHICK Opioid-binding protein/cell adhesion molecule homolog precursor
           (Neurite inhibitor GP55-A) (OBCAM protein gamma isoform)
          Length = 337

 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 42/145 (28%), Positives = 65/145 (44%), Gaps = 1/145 (0%)
 Frame = +2

Query: 293 YQLVVRDVIDSDSKRYQCKIDLAGFAESMKPFAIGLIILQKAPYITPIQSQI-VEEGKAL 469
           Y + + +V   D   Y C +      ++ +      +I+Q  P I  I S I V EG ++
Sbjct: 91  YSIKIHNVDVYDEGPYTCSVQTDNHPKTSRVH----LIVQVPPQIVNISSDITVNEGSSV 146

Query: 470 QLDCKANGSPPPRVSWVKANGQAFPLPGSPQRVQNTTLYLPKITRYDRGVFRCHAVNNVG 649
            L C A G P P V+W   +G+     G     ++  L +  ITR   G + C AVN+V 
Sbjct: 147 TLMCLAFGRPEPTVTWRHLSGK-----GQGFVSEDEYLEITGITREQSGEYECSAVNDVA 201

Query: 650 LAGEYDVMVEVTFKPRVRQARRMGA 724
           +     V V V + P +  A+  GA
Sbjct: 202 VPDVRKVKVTVNYPPYISNAKNTGA 226
>sp|P97685|NFASC_RAT Neurofascin precursor
          Length = 1240

 Score = 57.8 bits (138), Expect = 4e-08
 Identities = 61/228 (26%), Positives = 94/228 (41%), Gaps = 3/228 (1%)
 Frame = +2

Query: 101 ISETQKARATWYSMDEQKTIAWGTTLELPVRKDTNGNDKYIVNFIHKRPSYVPTMPGQSQ 280
           IS   KA   W    +   +A G    L  R   NGN K  V ++          P  ++
Sbjct: 329 ISVRVKAAPYWLDEPKNLILAPGEDGRLVCR--ANGNPKPTVQWLVNGDPLQSAPPNPNR 386

Query: 281 DVWNYQLVVRDVIDSDSKRYQCKIDLAGFAESMKPFAIGLIILQKAPYITPIQSQIVEE- 457
           +V    ++ RD   S    YQC             F   + +L   P +   ++Q++   
Sbjct: 387 EVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAF---VSVLDVPPRMLSPRNQLIRVI 443

Query: 458 -GKALQLDCKANGSPPPRVSWVKANGQAFPLPGSPQRV-QNTTLYLPKITRYDRGVFRCH 631
                +LDC   GSP P + W K NGQ   L G    V +N +L +  I + D+G++ C 
Sbjct: 444 LYNRTRLDCPFFGSPIPTLRWFK-NGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCV 502

Query: 632 AVNNVGLAGEYDVMVEVTFKPRVRQARRMGAYAQMANQNYEIMIECIV 775
           A N +G A E  V +EV    R+ +        Q+A +   + +EC V
Sbjct: 503 ATNILGKA-ENQVRLEVKDPTRIYRMPE----DQVAKRGTTVQLECRV 545

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 34/124 (27%), Positives = 54/124 (43%), Gaps = 10/124 (8%)
 Frame = +2

Query: 440 SQIVEEGKALQLDCKANGSPPPRVSWVKANGQAFPLPGSPQRVQ--NTTLYLPKITRYDR 613
           SQ+V  G  L L+C A+G P P ++W K  G    LP    + +  N  L +  ++  D 
Sbjct: 255 SQMVLRGMDLLLECIASGVPTPDIAWYKKGGD---LPSDKAKFENFNKALRITNVSEEDS 311

Query: 614 GVFRCHAVNNVGLAGEYDVMVEVTFKP--------RVRQARRMGAYAQMANQNYEIMIEC 769
           G + C A N +G +  + + V V   P         +      G     AN N +  ++ 
Sbjct: 312 GEYFCLASNKMG-SIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQW 370

Query: 770 IVNG 781
           +VNG
Sbjct: 371 LVNG 374

 Score = 41.2 bits (95), Expect = 0.004
 Identities = 37/145 (25%), Positives = 63/145 (43%), Gaps = 3/145 (2%)
 Frame = +2

Query: 287 WNYQLVVRDVIDSDSKRYQCKIDLAGFAESMKPFAIGLIILQKAPYITPIQSQIVEEGKA 466
           +N  L + +V + DS  Y C   LA          I + +     ++   ++ I+  G+ 
Sbjct: 297 FNKALRITNVSEEDSGEYFC---LASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGED 353

Query: 467 LQLDCKANGSPPPRVSWVKANGQAFPLPGSPQR-VQNTTLYLPKITRYDRGVFRCHAVNN 643
            +L C+ANG+P P V W+         P +P R V   T+         R V++C+  N 
Sbjct: 354 GRLVCRANGNPKPTVQWLVNGDPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNE 413

Query: 644 VG--LAGEYDVMVEVTFKPRVRQAR 712
            G  LA  +  +++V   PR+   R
Sbjct: 414 HGYLLANAFVSVLDV--PPRMLSPR 436

 Score = 33.9 bits (76), Expect = 0.62
 Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 10/106 (9%)
 Frame = +2

Query: 407 LQKAPYITP--IQSQIVEEGKALQLDCKANGSPPPRVSWVKANGQAFPLPGSPQ---RVQ 571
           L + P IT   ++  IV+    + ++C+A G+P P   W + N + F +   P+   R +
Sbjct: 37  LTQPPTITKQSVKDHIVDPRDNILIECEAKGNPAPSFHWTR-NSRFFNIAKDPRVSMRRR 95

Query: 572 NTTLYLP-----KITRYDRGVFRCHAVNNVGLAGEYDVMVEVTFKP 694
           + TL +      +   Y+ G ++C A N  G A    + ++V+  P
Sbjct: 96  SGTLVIDFRSGGRPEEYE-GEYQCFARNKFGTALSNRIRLQVSKSP 140
>sp|O94856|NFASC_HUMAN Neurofascin precursor
          Length = 1240

 Score = 57.4 bits (137), Expect = 5e-08
 Identities = 61/228 (26%), Positives = 94/228 (41%), Gaps = 3/228 (1%)
 Frame = +2

Query: 101 ISETQKARATWYSMDEQKTIAWGTTLELPVRKDTNGNDKYIVNFIHKRPSYVPTMPGQSQ 280
           IS   KA   W    +   +A G    L  R   NGN K  V ++          P  ++
Sbjct: 329 ISVRVKAAPYWLDEPKNLILAPGEDGRLVCR--ANGNPKPTVQWMVNGEPLQSAPPNPNR 386

Query: 281 DVWNYQLVVRDVIDSDSKRYQCKIDLAGFAESMKPFAIGLIILQKAPYITPIQSQIVEE- 457
           +V    ++ RD   S    YQC             F   + +L   P +   ++Q++   
Sbjct: 387 EVAGDTIIFRDTQISSRAVYQCNTSNEHGYLLANAF---VSVLDVPPRMLSPRNQLIRVI 443

Query: 458 -GKALQLDCKANGSPPPRVSWVKANGQAFPLPGSPQRV-QNTTLYLPKITRYDRGVFRCH 631
                +LDC   GSP P + W K NGQ   L G    V +N +L +  I + D+G++ C 
Sbjct: 444 LYNRTRLDCPFFGSPIPTLRWFK-NGQGSNLDGGNYHVYENGSLEIKMIRKEDQGIYTCV 502

Query: 632 AVNNVGLAGEYDVMVEVTFKPRVRQARRMGAYAQMANQNYEIMIECIV 775
           A N +G A E  V +EV    R+ +        Q+A +   + +EC V
Sbjct: 503 ATNILGKA-ENQVRLEVKDPTRIYRMPE----DQVARRGTTVQLECRV 545

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 12/139 (8%)
 Frame = +2

Query: 269 GQSQDVWNYQLVVRDVIDSDSKRYQC--KIDLAGFAESMKPFAIGLIILQKAPYITP--- 433
           G + D++   ++++D+       Y C  +       +   PF + ++  +     TP   
Sbjct: 192 GHNGDLYFSNVMLQDM----QTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFM 247

Query: 434 -----IQSQIVEEGKALQLDCKANGSPPPRVSWVKANGQAFPLPGSPQRVQ--NTTLYLP 592
                  SQ+V  G  L L+C A+G P P ++W K  G    LP    + +  N  L + 
Sbjct: 248 YPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGD---LPSDKAKFENFNKALRIT 304

Query: 593 KITRYDRGVFRCHAVNNVG 649
            ++  D G + C A N +G
Sbjct: 305 NVSEEDSGEYFCLASNKMG 323

 Score = 40.8 bits (94), Expect = 0.005
 Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 6/148 (4%)
 Frame = +2

Query: 287 WNYQLVVRDVIDSDSKRYQCKIDLAGFAESMKPFAIGLIILQKAPYITPIQSQIVEEGKA 466
           +N  L + +V + DS  Y C   LA          I + +     ++   ++ I+  G+ 
Sbjct: 297 FNKALRITNVSEEDSGEYFC---LASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGED 353

Query: 467 LQLDCKANGSPPPRVSWVKANGQAFPLPGSP----QRVQNTTLYLPKITRYDRGVFRCHA 634
            +L C+ANG+P P V W+  NG+  PL  +P    + V   T+         R V++C+ 
Sbjct: 354 GRLVCRANGNPKPTVQWM-VNGE--PLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNT 410

Query: 635 VNNVG--LAGEYDVMVEVTFKPRVRQAR 712
            N  G  LA  +  +++V   PR+   R
Sbjct: 411 SNEHGYLLANAFVSVLDV--PPRMLSPR 436

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 10/106 (9%)
 Frame = +2

Query: 407 LQKAPYITP--IQSQIVEEGKALQLDCKANGSPPPRVSWVKANGQAFPLPGSPQ---RVQ 571
           L + P IT    +  IV+    + ++C+A G+P P   W + N + F +   P+   R +
Sbjct: 37  LTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTR-NSRFFNIAKDPRVSMRRR 95

Query: 572 NTTLYLP-----KITRYDRGVFRCHAVNNVGLAGEYDVMVEVTFKP 694
           + TL +      +   Y+ G ++C A N  G A    + ++V+  P
Sbjct: 96  SGTLVIDFRSGGRPEEYE-GEYQCFARNKFGTALSNRIRLQVSKSP 140
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,607,888
Number of Sequences: 369166
Number of extensions: 2264597
Number of successful extensions: 6576
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6413
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8838279920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)