Planaria EST Database


DrC_02948

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02948
         (360 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P62194|PRS8_BOVIN  26S protease regulatory subunit 8 (Pro...   224   6e-59
sp|O18413|PRS8_DROME  26S protease regulatory subunit 8           223   1e-58
sp|P46470|PRS8_XENLA  26S protease regulatory subunit 8 (SUG...   221   4e-58
sp|P54814|PRS8_MANSE  26S protease regulatory subunit 8 (18-...   219   2e-57
sp|Q25544|PRS8_NAEFO  26S protease regulatory subunit 8 homo...   213   1e-55
sp|P41836|PRS8_SCHPO  26S protease regulatory subunit 8 homo...   210   9e-55
sp|P34124|PRS8_DICDI  26S protease regulatory subunit 8 (TAT...   209   2e-54
sp|Q01939|PRS8_YEAST  26S protease regulatory subunit 8 homo...   199   1e-51
sp|O26824|PSMR_METTH  Proteasome-activating nucleotidase (Pr...   146   2e-35
sp|Q8TX03|PSMR_METKA  Proteasome-activating nucleotidase (Pr...   136   1e-32
>sp|P62194|PRS8_BOVIN 26S protease regulatory subunit 8 (Proteasome subunit p45)
           (p45/SUG) (Proteasome 26S subunit ATPase 5)
 sp|P62196|PRS8_MOUSE 26S protease regulatory subunit 8 (Proteasome subunit p45)
           (p45/SUG) (Proteasome 26S subunit ATPase 5) (mSUG1)
 sp|P62195|PRS8_HUMAN 26S protease regulatory subunit 8 (Proteasome subunit p45)
           (p45/SUG) (Proteasome 26S subunit ATPase 5) (Thyroid
           hormone receptor interacting protein 1) (TRIP1)
 sp|P62198|PRS8_RAT 26S protease regulatory subunit 8 (Proteasome subunit p45)
           (p45/SUG) (Proteasome 26S subunit ATPase 5) (Thyroid
           hormone receptor interacting protein 1) (TRIP1)
 sp|P62197|PRS8_PIG 26S protease regulatory subunit 8 (Proteasome subunit p45)
           (p45/SUG) (Proteasome 26S subunit ATPase 5) (TAT-binding
           protein homolog 10) (TBP10)
          Length = 406

 Score =  224 bits (570), Expect = 6e-59
 Identities = 110/119 (92%), Positives = 116/119 (97%)
 Frame = +3

Query: 3   IEMSQVTPNSRVALRNDSYMLHKILPSKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIK 182
           I+++ VTPN RVALRNDSY LHKILP+KVDPLVSLMMVEKVPDSTYEM+GGLDKQIKEIK
Sbjct: 103 IDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIK 162

Query: 183 EVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 359
           EVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQ
Sbjct: 163 EVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 221
>sp|O18413|PRS8_DROME 26S protease regulatory subunit 8
          Length = 405

 Score =  223 bits (567), Expect = 1e-58
 Identities = 110/119 (92%), Positives = 116/119 (97%)
 Frame = +3

Query: 3   IEMSQVTPNSRVALRNDSYMLHKILPSKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIK 182
           I+++ VTPN RVALRN+SY LHKILP+KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIK
Sbjct: 102 IDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIK 161

Query: 183 EVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 359
           EVIELPVKHPELF+ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ
Sbjct: 162 EVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 220
>sp|P46470|PRS8_XENLA 26S protease regulatory subunit 8 (SUG1 homolog) (xSUG1)
          Length = 461

 Score =  221 bits (563), Expect = 4e-58
 Identities = 109/119 (91%), Positives = 115/119 (96%)
 Frame = +3

Query: 3   IEMSQVTPNSRVALRNDSYMLHKILPSKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIK 182
           I+++ VTPN RVALRNDSY LHKILP+KVDPLVSLMMVEKVPDSTYEM+GGLDKQIKEIK
Sbjct: 98  IDINDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIK 157

Query: 183 EVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 359
           EVIELPVKHPE FEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQ
Sbjct: 158 EVIELPVKHPEHFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 216
>sp|P54814|PRS8_MANSE 26S protease regulatory subunit 8 (18-56 protein)
          Length = 402

 Score =  219 bits (558), Expect = 2e-57
 Identities = 108/119 (90%), Positives = 115/119 (96%)
 Frame = +3

Query: 3   IEMSQVTPNSRVALRNDSYMLHKILPSKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIK 182
           ++++ VT N RVALRN+SY LHKILP+KVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIK
Sbjct: 99  VDINDVTANCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIK 158

Query: 183 EVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 359
           EVIELPVKHPELF+ALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ
Sbjct: 159 EVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 217
>sp|Q25544|PRS8_NAEFO 26S protease regulatory subunit 8 homolog (TAT-binding protein
           homolog)
          Length = 414

 Score =  213 bits (542), Expect = 1e-55
 Identities = 102/119 (85%), Positives = 113/119 (94%)
 Frame = +3

Query: 3   IEMSQVTPNSRVALRNDSYMLHKILPSKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIK 182
           IE+  +TP  RVALRNDSY LHKILP+K+DPLVSLM VEKVPD+TYEMVGGLD+QIKEIK
Sbjct: 110 IELKDLTPGVRVALRNDSYALHKILPNKIDPLVSLMKVEKVPDATYEMVGGLDEQIKEIK 169

Query: 183 EVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 359
           EVIELP+KHPELFE+LGIAQPKGV++YGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQ
Sbjct: 170 EVIELPIKHPELFESLGIAQPKGVIMYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 228
>sp|P41836|PRS8_SCHPO 26S protease regulatory subunit 8 homolog (Protein let1)
          Length = 403

 Score =  210 bits (534), Expect = 9e-55
 Identities = 102/119 (85%), Positives = 112/119 (94%)
 Frame = +3

Query: 3   IEMSQVTPNSRVALRNDSYMLHKILPSKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIK 182
           I++ ++ PN RVALRNDSY L KILP+KVDPLVSLMMVEK+PDSTYEMVGGL+KQIKEIK
Sbjct: 99  IDIKEIKPNIRVALRNDSYQLIKILPNKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIK 158

Query: 183 EVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 359
           EVIELPVKHPELFE+LGI QPKG+LLYGPPGTGKTLLARAVAHHT+C FIRVSGSELVQ
Sbjct: 159 EVIELPVKHPELFESLGIPQPKGILLYGPPGTGKTLLARAVAHHTDCKFIRVSGSELVQ 217
>sp|P34124|PRS8_DICDI 26S protease regulatory subunit 8 (TAT-binding protein homolog 10)
          Length = 389

 Score =  209 bits (531), Expect = 2e-54
 Identities = 97/119 (81%), Positives = 116/119 (97%)
 Frame = +3

Query: 3   IEMSQVTPNSRVALRNDSYMLHKILPSKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIK 182
           ++++++TP++R AL+++SY LH+ILP+K+DPLVSLM VEK+PDSTY+MVGGLDKQIKEIK
Sbjct: 85  VDIAKLTPSTRAALKHESYTLHRILPNKIDPLVSLMKVEKIPDSTYDMVGGLDKQIKEIK 144

Query: 183 EVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 359
           EVIELP+KHPELFE+LGIAQPKGVLLYGPPGTGKTLLARAVAHHT+CTFIRVSGSELVQ
Sbjct: 145 EVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ 203
>sp|Q01939|PRS8_YEAST 26S protease regulatory subunit 8 homolog (SUG1 protein) (CIM3
           protein) (TAT-binding protein TBY1)
          Length = 405

 Score =  199 bits (507), Expect = 1e-51
 Identities = 97/119 (81%), Positives = 108/119 (90%)
 Frame = +3

Query: 3   IEMSQVTPNSRVALRNDSYMLHKILPSKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIK 182
           I +  +  + RV LR+DSYMLHK+L +K DPLVSLMMVEKVPDSTY+MVGGL KQIKEIK
Sbjct: 102 INVKDLKASQRVCLRSDSYMLHKVLENKADPLVSLMMVEKVPDSTYDMVGGLTKQIKEIK 161

Query: 183 EVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 359
           EVIELPVKHPELFE+LGIAQPKGV+LYGPPGTGKTLLARAVAHHT+C FIRVSG+ELVQ
Sbjct: 162 EVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ 220
>sp|O26824|PSMR_METTH Proteasome-activating nucleotidase (Proteasome regulatory subunit)
          Length = 410

 Score =  146 bits (368), Expect = 2e-35
 Identities = 67/119 (56%), Positives = 92/119 (77%)
 Frame = +3

Query: 3   IEMSQVTPNSRVALRNDSYMLHKILPSKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIK 182
           I+  Q+ P +RVAL   ++ +  +LPS+ DP+V+ M VE+ PD +YE +GGL++Q++E+K
Sbjct: 105 IDRKQLEPGARVALNQQTFSIVDVLPSEKDPVVTGMEVEEKPDVSYEQIGGLEEQVREVK 164

Query: 183 EVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 359
           E +ELP+K PELFE +GI  PKGVLLYGPPGTGKTLLA+AVAH T  TFI++  SE V+
Sbjct: 165 ETVELPLKKPELFEKIGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIKIVASEFVR 223
>sp|Q8TX03|PSMR_METKA Proteasome-activating nucleotidase (Proteasome regulatory subunit)
          Length = 436

 Score =  136 bits (343), Expect = 1e-32
 Identities = 64/119 (53%), Positives = 90/119 (75%)
 Frame = +3

Query: 3   IEMSQVTPNSRVALRNDSYMLHKILPSKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIK 182
           ++ +++ P + VAL   S  +  +LPS+ D  V  M V++ PD +Y+ +GGLD+QI+EI+
Sbjct: 133 VDRNELEPGANVALNQQSMAVVDVLPSEKDSRVLAMEVDESPDVSYDDIGGLDEQIREIR 192

Query: 183 EVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTECTFIRVSGSELVQ 359
           EV+E P+K PELFE +G+  PKGVLLYGPPGTGKTLLA+AVA+H + TFIR++  ELVQ
Sbjct: 193 EVVEKPLKEPELFEKVGVEPPKGVLLYGPPGTGKTLLAKAVANHADATFIRLAAPELVQ 251
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,568,162
Number of Sequences: 369166
Number of extensions: 754293
Number of successful extensions: 5283
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5249
length of database: 68,354,980
effective HSP length: 87
effective length of database: 52,283,035
effective search space used: 1673057120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)