Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02934
(855 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UJ41|RABX5_HUMAN Rab5 GDP/GTP exchange factor (Rabex-5) 43 0.001
sp|O18973|RABX5_BOVIN Rab5 GDP/GTP exchange factor (Rabex-5) 42 0.002
sp|Q9JM13|RABX5_MOUSE Rab5 GDP/GTP exchange factor (Rabex-5) 41 0.004
sp|Q75RY2|PAIR1_ORYSA Protein PAIR1 (HOMOLOGOUS PAIRING ABE... 39 0.024
sp|O94666|RPC1_SCHPO DNA-directed RNA polymerase III larges... 35 0.20
sp|Q92729|PTPRU_HUMAN Receptor-type tyrosine-protein phosph... 35 0.20
sp|P59729|RIN3_MOUSE Ras and Rab interactor 3 (Ras interact... 35 0.27
sp|P34248|YKK0_YEAST Hypothetical 67.5 kDa protein in APE1/... 35 0.35
sp|Q9LVT1|DRL39_ARATH Putative disease resistance protein A... 34 0.59
sp|Q9ZCD4|FTSK_RICPR DNA translocase ftsK 33 1.0
>sp|Q9UJ41|RABX5_HUMAN Rab5 GDP/GTP exchange factor (Rabex-5)
Length = 708
Score = 42.7 bits (99), Expect = 0.001
Identities = 36/144 (25%), Positives = 69/144 (47%), Gaps = 8/144 (5%)
Frame = +2
Query: 326 RKEINSIRKITTPLEICECIRKVIAELSNLRQSKVSISVMPNDISNFP----SVNTICDQ 493
+K I ++R +T P +C + + I E+S++ ++ ++ D P + T C +
Sbjct: 456 QKRIRALRWVT-PQMLCVPVNEDIPEVSDMVVKAIT-DIIEMDSKRVPRDKLACITKCSK 513
Query: 494 RNYHSIS-KSNLMVTSDDLLSALIFLVIKSEIPNWYAYLQYALNFRFATCARDDEYQYYL 670
+++I N ++DD L LI++V+K P + +QY F + E YY
Sbjct: 514 HIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYF 573
Query: 671 TSL---EATLEHIRNMNSNVVEED 733
T+L A +E + + N+ +ED
Sbjct: 574 TNLCCAVAFIEKLDAQSLNLSQED 597
>sp|O18973|RABX5_BOVIN Rab5 GDP/GTP exchange factor (Rabex-5)
Length = 492
Score = 42.4 bits (98), Expect = 0.002
Identities = 40/166 (24%), Positives = 76/166 (45%), Gaps = 8/166 (4%)
Frame = +2
Query: 326 RKEINSIRKITTPLEICECIRKVIAELSNLRQSKVSISVMPNDISNFP----SVNTICDQ 493
+K I ++ +T P +C + + I E+S++ ++ ++ D P + T C +
Sbjct: 240 QKRIRALHWVT-PQMLCVPVNEEIPEVSDMVVKAIT-DIIEMDSKRVPRDKLACITKCSK 297
Query: 494 RNYHSIS-KSNLMVTSDDLLSALIFLVIKSEIPNWYAYLQYALNFRFATCARDDEYQYYL 670
+++I N ++DD L LI++V+K P + +QY F + E YY
Sbjct: 298 HIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYF 357
Query: 671 TSL---EATLEHIRNMNSNVVEEDLVMDVSYTLSINSGDSSVSNWA 799
T+L A +E + + N+ +ED +S S +S NW+
Sbjct: 358 TNLCCAVAFIEKLDAQSLNLSQEDFDRYMSGQTSPRKQES--ENWS 401
>sp|Q9JM13|RABX5_MOUSE Rab5 GDP/GTP exchange factor (Rabex-5)
Length = 491
Score = 41.2 bits (95), Expect = 0.004
Identities = 35/144 (24%), Positives = 68/144 (47%), Gaps = 8/144 (5%)
Frame = +2
Query: 326 RKEINSIRKITTPLEICECIRKVIAELSNLRQSKVSISVMPNDISNFP----SVNTICDQ 493
+K I ++ +T P +C + + I E+S++ ++ ++ D P + T C +
Sbjct: 239 QKRIRALHWVT-PQMLCVPVNEEIPEVSDMVVKAIT-DIIEMDSKRVPRDKLACITRCSK 296
Query: 494 RNYHSIS-KSNLMVTSDDLLSALIFLVIKSEIPNWYAYLQYALNFRFATCARDDEYQYYL 670
+++I N ++DD L LI++V+K P + +QY F + E YY
Sbjct: 297 HIFNAIKITKNEPASADDFLPTLIYIVLKGNPPRLQSNIQYITRFCNPSRLMTGEDGYYF 356
Query: 671 TSL---EATLEHIRNMNSNVVEED 733
T+L A +E + + N+ +ED
Sbjct: 357 TNLCCAVAFIEKLDAQSLNLSQED 380
>sp|Q75RY2|PAIR1_ORYSA Protein PAIR1 (HOMOLOGOUS PAIRING ABERRATION IN RICE MEIOSIS 1
protein)
Length = 492
Score = 38.5 bits (88), Expect = 0.024
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = +2
Query: 644 RDDEYQYYLTSLEATLEHIRNMNSNVVEEDLVMDVSYTLSINSGDSSVSNWADIMQTPVS 823
R D ++ + +E + IR++NS ++ D SY + +++G W I QTPV+
Sbjct: 292 RCDVFRVFTKEMEGVVRAIRSVNSRPAAMQMMADQSYQVPVSNG------WTQINQTPVA 345
Query: 824 TGR 832
GR
Sbjct: 346 AGR 348
>sp|O94666|RPC1_SCHPO DNA-directed RNA polymerase III largest subunit
Length = 1405
Score = 35.4 bits (80), Expect = 0.20
Identities = 58/290 (20%), Positives = 118/290 (40%), Gaps = 17/290 (5%)
Frame = +2
Query: 17 LNSPTVEDCFTIMKDLYLSSLHNVTSRRTYKEVIKKNEN-LKNSMMLALEMYICNSVF-- 187
L P ++D + D+ V R++ + +I+ E L++ + E Y+ V
Sbjct: 989 LEEPDMDD----LDDMEGDEFAPVAKRKSVENIIRVTEKQLRSFVDRCWEKYMRAKVEPG 1044
Query: 188 SALFAALTDSIAEKDEEVNRATRTFQNIRASKSGIRFDVCENIPRARKEINSIRKITTPL 367
+A+ A SI E ++ T F +G+ +PR ++ IN+ + I+TP+
Sbjct: 1045 TAVGAIGAQSIGEPGTQMTLKTFHF-------AGVAAQTTLGVPRIKEIINAAKTISTPI 1097
Query: 368 EICECIRKVIAELSNLRQSKVSISVMPNDISNF------PSVNTICDQRNYHSISKSNLM 529
+ I + + + ++ + + D++++ P + Q N+ +ISK L
Sbjct: 1098 ITGQLINDRDERSARVVKGRIEKTYL-KDVTSYIEEVYGPVTTYLSIQVNFDTISKLQLD 1156
Query: 530 VTSDDLLSALIFLVIKSEIPNWYAYLQYALNFRFATCARD-----DEYQYYLTSLEATLE 694
+T D ++A I+ K +IP+ + L + D E Y L + + L
Sbjct: 1157 ITLAD-IAAAIWNTPKLKIPSQQVTVNNTLQQIHVHTSSDGKSSETEVYYRLQTYKRVLP 1215
Query: 695 HIRNMNSNVVEEDLVMDVSYTLSI---NSGDSSVSNWADIMQTPVSTGRV 835
+ + ++ S + + +G +V N I+ T ST V
Sbjct: 1216 DVVVAGIPTINRSVINQESGKIELFMEGTGLQAVMNTEGIVGTKTSTNHV 1265
>sp|Q92729|PTPRU_HUMAN Receptor-type tyrosine-protein phosphatase U precursor (R-PTP-U)
(Protein-tyrosine phosphatase J) (PTP-J) (Pancreatic
carcinoma phosphatase 2) (PCP-2)
Length = 1430
Score = 35.4 bits (80), Expect = 0.20
Identities = 24/74 (32%), Positives = 35/74 (47%)
Frame = +2
Query: 281 KSGIRFDVCENIPRARKEINSIRKITTPLEICECIRKVIAELSNLRQSKVSISVMPNDIS 460
K IR D N + R+E ++ +T PL++ EC IA L R S+ V+P D
Sbjct: 1146 KEMIRIDPQSNSSQLREEFQTLNSVTPPLDVEEC---SIALLPRNRDKNRSMDVLPPDRC 1202
Query: 461 NFPSVNTICDQRNY 502
++T D NY
Sbjct: 1203 LPFLISTDGDSNNY 1216
>sp|P59729|RIN3_MOUSE Ras and Rab interactor 3 (Ras interaction/interference protein 3)
Length = 980
Score = 35.0 bits (79), Expect = 0.27
Identities = 19/71 (26%), Positives = 35/71 (49%)
Frame = +2
Query: 536 SDDLLSALIFLVIKSEIPNWYAYLQYALNFRFATCARDDEYQYYLTSLEATLEHIRNMNS 715
+DD L L++++ +S + ++Y + + E YYLT+ LEHI+N +
Sbjct: 781 ADDFLPVLMYVLARSNLTEMLLNVEYMMEL-MDPALQLGEGSYYLTTTYGALEHIKNYDK 839
Query: 716 NVVEEDLVMDV 748
V L ++V
Sbjct: 840 ITVTRQLSVEV 850
>sp|P34248|YKK0_YEAST Hypothetical 67.5 kDa protein in APE1/LAP4-CWP1 intergenic region
Length = 587
Score = 34.7 bits (78), Expect = 0.35
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +2
Query: 524 LMVTSDDLLSALIFLVIKSEIPNWYAYLQYALNFRFATC---ARDDEYQYYLTSLEATLE 694
L +TS L AL F++ K + NW Y+ LNF A Y Y+L SL L
Sbjct: 161 LPLTSGCTLLALYFVIKKLHL-NWLKYVVKILNFNITLLNIPAGTFVYSYFLNSLFRNLS 219
Query: 695 HIRNMNSNVV 724
H+ + N VV
Sbjct: 220 HLASWNPLVV 229
>sp|Q9LVT1|DRL39_ARATH Putative disease resistance protein At5g47280
Length = 623
Score = 33.9 bits (76), Expect = 0.59
Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 21/185 (11%)
Frame = +2
Query: 47 TIMKDLYLSSLHNVTSRRTYKEVIKKNENLKNSMMLALEMYICNSVF-------SALFAA 205
T ++ L+L +H E+ LKN L L + N+ F + +F
Sbjct: 412 TNLRSLWLERVH-------VPELSSSMIPLKNLHKLYLIICKINNSFDQTAIDIAQIFPK 464
Query: 206 LTDSIAEKDEEVNRATRTFQNIRASKSGIRFDVCENIPRARKEINSIRKI---------- 355
LTD + +++ T I S + I C NI K I+ ++ +
Sbjct: 465 LTDITIDYCDDLAELPSTICGI-TSLNSISITNCPNIKELPKNISKLQALQLLRLYACPE 523
Query: 356 --TTPLEICECIRKVIAELSNLRQSKVSISVMPNDISNFPSVNTICDQR--NYHSISKSN 523
+ P+EICE R V ++S+ +S+S +P I N ++ I D R + SI S
Sbjct: 524 LKSLPVEICELPRLVYVDISHC----LSLSSLPEKIGNVRTLEKI-DMRECSLSSIPSSA 578
Query: 524 LMVTS 538
+ +TS
Sbjct: 579 VSLTS 583
>sp|Q9ZCD4|FTSK_RICPR DNA translocase ftsK
Length = 744
Score = 33.1 bits (74), Expect = 1.0
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Frame = +2
Query: 428 VSISVMPNDISNFPSVNTICDQRNYH--SISKSNLMVTSDDLLSALIFLVIKSEIPN 592
V + N I++ P ++ +CD +N H S S L +++LL+ L +K +I N
Sbjct: 240 VCTKISQNQIASLPPISLLCDPKNNHVKGASSSELKQKAEELLTVLNDFGVKGQIIN 296
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,534,560
Number of Sequences: 369166
Number of extensions: 1460887
Number of successful extensions: 3872
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3869
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8438301375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)