Planaria EST Database


DrC_02930

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02930
         (524 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9CQ94|DNJ5B_MOUSE  DnaJ homolog subfamily C member 5B (B...    75   1e-13
sp|Q9UF47|DNJ5B_HUMAN  DnaJ homolog subfamily C member 5B (B...    70   3e-12
sp|P60905|DNJC5_RAT  DnaJ homolog subfamily C member 5 (Cyst...    67   3e-11
sp|Q9H3Z4|DNJC5_HUMAN  DnaJ homolog subfamily C member 5 (Cy...    67   3e-11
sp|Q29455|DNJC5_BOVIN  DnaJ homolog subfamily C member 5 (Cy...    66   4e-11
sp|P56101|CSP_TORCA  Cysteine string protein (CCCS1)               65   8e-11
sp|O42196|CSP_XENLA  Cysteine string protein (CSP) (Xcsp)          64   3e-10
sp|Q03751|CSP_DROME  Cysteine string protein                       63   4e-10
sp|Q8N7S2|DNJ5G_HUMAN  DnaJ homolog subfamily C member 5G (G...    55   1e-07
sp|O27352|DNAJ_METTH  Chaperone protein dnaJ                       54   3e-07
>sp|Q9CQ94|DNJ5B_MOUSE DnaJ homolog subfamily C member 5B (Beta cysteine string protein)
           (Beta-CSP)
          Length = 199

 Score = 75.1 bits (183), Expect = 1e-13
 Identities = 35/69 (50%), Positives = 47/69 (68%)
 Frame = +1

Query: 4   EDPNAAEKFKEISKAYSVLTDTRKRRIYDKYGSFGLDVANQLGDDKAEFFLKFENPCVKV 183
           +DP+AAEKFKEI+ A+++LTDT KR IYDKYGS GL VA Q GD+    +    +   K 
Sbjct: 53  DDPSAAEKFKEINNAHTILTDTSKRNIYDKYGSLGLYVAEQFGDENVNTYFMLSSWWAKT 112

Query: 184 LLVLMCLFT 210
           L +++ L T
Sbjct: 113 LFIIIGLLT 121
>sp|Q9UF47|DNJ5B_HUMAN DnaJ homolog subfamily C member 5B (Beta cysteine string protein)
           (Beta-CSP)
          Length = 199

 Score = 70.1 bits (170), Expect = 3e-12
 Identities = 34/69 (49%), Positives = 44/69 (63%)
 Frame = +1

Query: 4   EDPNAAEKFKEISKAYSVLTDTRKRRIYDKYGSFGLDVANQLGDDKAEFFLKFENPCVKV 183
           +DP A EKFKEI+ A+++LTD  KR IYDKYGS GL VA Q GD+    +    +   K 
Sbjct: 53  DDPAATEKFKEINNAHAILTDISKRSIYDKYGSLGLYVAEQFGDENVNTYFMLSSWWAKA 112

Query: 184 LLVLMCLFT 210
           L V++ L T
Sbjct: 113 LFVIVGLLT 121
>sp|P60905|DNJC5_RAT DnaJ homolog subfamily C member 5 (Cysteine string protein) (CSP)
 sp|P60904|DNJC5_MOUSE DnaJ homolog subfamily C member 5 (Cysteine string protein) (CSP)
          Length = 198

 Score = 67.0 bits (162), Expect = 3e-11
 Identities = 32/69 (46%), Positives = 44/69 (63%)
 Frame = +1

Query: 4   EDPNAAEKFKEISKAYSVLTDTRKRRIYDKYGSFGLDVANQLGDDKAEFFLKFENPCVKV 183
           ++P AA+KFKEI+ A+++LTD  KR IYDKYGS GL VA Q G++    +    +   K 
Sbjct: 49  DNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLYVAEQFGEENVNTYFVLSSWWAKA 108

Query: 184 LLVLMCLFT 210
           L V+  L T
Sbjct: 109 LFVVCGLLT 117
>sp|Q9H3Z4|DNJC5_HUMAN DnaJ homolog subfamily C member 5 (Cysteine string protein) (CSP)
          Length = 198

 Score = 66.6 bits (161), Expect = 3e-11
 Identities = 32/69 (46%), Positives = 43/69 (62%)
 Frame = +1

Query: 4   EDPNAAEKFKEISKAYSVLTDTRKRRIYDKYGSFGLDVANQLGDDKAEFFLKFENPCVKV 183
           ++P AA+KFKEI+ A+++LTD  KR IYDKYGS GL VA Q G++    +    +   K 
Sbjct: 49  DNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLYVAEQFGEENVNTYFVLSSWWAKA 108

Query: 184 LLVLMCLFT 210
           L V   L T
Sbjct: 109 LFVFCGLLT 117
>sp|Q29455|DNJC5_BOVIN DnaJ homolog subfamily C member 5 (Cysteine string protein) (CSP)
          Length = 198

 Score = 66.2 bits (160), Expect = 4e-11
 Identities = 31/69 (44%), Positives = 43/69 (62%)
 Frame = +1

Query: 4   EDPNAAEKFKEISKAYSVLTDTRKRRIYDKYGSFGLDVANQLGDDKAEFFLKFENPCVKV 183
           ++P AA+KFKEI+ A+++LTD  KR IYDKYGS GL VA Q G++    +    +   K 
Sbjct: 49  DNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLYVAEQFGEENVNTYFVLSSWWAKA 108

Query: 184 LLVLMCLFT 210
           L +   L T
Sbjct: 109 LFIFCGLLT 117
>sp|P56101|CSP_TORCA Cysteine string protein (CCCS1)
          Length = 195

 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 31/69 (44%), Positives = 43/69 (62%)
 Frame = +1

Query: 4   EDPNAAEKFKEISKAYSVLTDTRKRRIYDKYGSFGLDVANQLGDDKAEFFLKFENPCVKV 183
           ++P A+EKFKEI+ A+++LTD  KR IYDKYGS GL VA Q G++    +    +   K 
Sbjct: 49  DNPEASEKFKEINNAHAILTDATKRNIYDKYGSLGLYVAEQFGEENVNTYFVLSSWWAKA 108

Query: 184 LLVLMCLFT 210
           L V   + T
Sbjct: 109 LFVFCGVIT 117
>sp|O42196|CSP_XENLA Cysteine string protein (CSP) (Xcsp)
          Length = 197

 Score = 63.5 bits (153), Expect = 3e-10
 Identities = 30/69 (43%), Positives = 42/69 (60%)
 Frame = +1

Query: 4   EDPNAAEKFKEISKAYSVLTDTRKRRIYDKYGSFGLDVANQLGDDKAEFFLKFENPCVKV 183
           ++P A+EKFKEI+ A+ +L D+ KR IYDKYGS GL VA Q G++    +    +   K 
Sbjct: 49  DNPEASEKFKEINNAHGILADSTKRNIYDKYGSLGLYVAEQFGEENVNTYFVLSSWWAKA 108

Query: 184 LLVLMCLFT 210
           L +   L T
Sbjct: 109 LFMFCGLIT 117
>sp|Q03751|CSP_DROME Cysteine string protein
          Length = 249

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 26/69 (37%), Positives = 46/69 (66%)
 Frame = +1

Query: 4   EDPNAAEKFKEISKAYSVLTDTRKRRIYDKYGSFGLDVANQLGDDKAEFFLKFENPCVKV 183
           ++ +AA+KFKE+++A+S+L++  KR IYD YGS GL +A Q G++    +    +P VK 
Sbjct: 51  DNVDAADKFKEVNRAHSILSNQTKRNIYDNYGSLGLYIAEQFGEENVNAYFVVTSPAVKA 110

Query: 184 LLVLMCLFT 210
           +++   + T
Sbjct: 111 VVICCAVIT 119
>sp|Q8N7S2|DNJ5G_HUMAN DnaJ homolog subfamily C member 5G (Gamma cysteine string protein)
           (Gamma-CSP)
          Length = 189

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 24/65 (36%), Positives = 44/65 (67%)
 Frame = +1

Query: 16  AAEKFKEISKAYSVLTDTRKRRIYDKYGSFGLDVANQLGDDKAEFFLKFENPCVKVLLVL 195
           AAE FKEI+ A+++L+D++KR+IYD++GS G+ + +  G++   ++    +   K L++L
Sbjct: 71  AAEIFKEINAAHAILSDSKKRKIYDQHGSLGIYLYDHFGEEGVRYYFILNSCWFKTLVIL 130

Query: 196 MCLFT 210
             L T
Sbjct: 131 CTLLT 135
>sp|O27352|DNAJ_METTH Chaperone protein dnaJ
          Length = 376

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 24/41 (58%), Positives = 33/41 (80%)
 Frame = +1

Query: 4   EDPNAAEKFKEISKAYSVLTDTRKRRIYDKYGSFGLDVANQ 126
           +DP+AAEKFKEIS+AY+VL+D  KR  YD++G  G+D  +Q
Sbjct: 38  DDPDAAEKFKEISEAYAVLSDDEKRARYDRFGHAGMDGFSQ 78
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,479,940
Number of Sequences: 369166
Number of extensions: 801684
Number of successful extensions: 2425
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2423
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3502236525
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)