Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02930
(524 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CQ94|DNJ5B_MOUSE DnaJ homolog subfamily C member 5B (B... 75 1e-13
sp|Q9UF47|DNJ5B_HUMAN DnaJ homolog subfamily C member 5B (B... 70 3e-12
sp|P60905|DNJC5_RAT DnaJ homolog subfamily C member 5 (Cyst... 67 3e-11
sp|Q9H3Z4|DNJC5_HUMAN DnaJ homolog subfamily C member 5 (Cy... 67 3e-11
sp|Q29455|DNJC5_BOVIN DnaJ homolog subfamily C member 5 (Cy... 66 4e-11
sp|P56101|CSP_TORCA Cysteine string protein (CCCS1) 65 8e-11
sp|O42196|CSP_XENLA Cysteine string protein (CSP) (Xcsp) 64 3e-10
sp|Q03751|CSP_DROME Cysteine string protein 63 4e-10
sp|Q8N7S2|DNJ5G_HUMAN DnaJ homolog subfamily C member 5G (G... 55 1e-07
sp|O27352|DNAJ_METTH Chaperone protein dnaJ 54 3e-07
>sp|Q9CQ94|DNJ5B_MOUSE DnaJ homolog subfamily C member 5B (Beta cysteine string protein)
(Beta-CSP)
Length = 199
Score = 75.1 bits (183), Expect = 1e-13
Identities = 35/69 (50%), Positives = 47/69 (68%)
Frame = +1
Query: 4 EDPNAAEKFKEISKAYSVLTDTRKRRIYDKYGSFGLDVANQLGDDKAEFFLKFENPCVKV 183
+DP+AAEKFKEI+ A+++LTDT KR IYDKYGS GL VA Q GD+ + + K
Sbjct: 53 DDPSAAEKFKEINNAHTILTDTSKRNIYDKYGSLGLYVAEQFGDENVNTYFMLSSWWAKT 112
Query: 184 LLVLMCLFT 210
L +++ L T
Sbjct: 113 LFIIIGLLT 121
>sp|Q9UF47|DNJ5B_HUMAN DnaJ homolog subfamily C member 5B (Beta cysteine string protein)
(Beta-CSP)
Length = 199
Score = 70.1 bits (170), Expect = 3e-12
Identities = 34/69 (49%), Positives = 44/69 (63%)
Frame = +1
Query: 4 EDPNAAEKFKEISKAYSVLTDTRKRRIYDKYGSFGLDVANQLGDDKAEFFLKFENPCVKV 183
+DP A EKFKEI+ A+++LTD KR IYDKYGS GL VA Q GD+ + + K
Sbjct: 53 DDPAATEKFKEINNAHAILTDISKRSIYDKYGSLGLYVAEQFGDENVNTYFMLSSWWAKA 112
Query: 184 LLVLMCLFT 210
L V++ L T
Sbjct: 113 LFVIVGLLT 121
>sp|P60905|DNJC5_RAT DnaJ homolog subfamily C member 5 (Cysteine string protein) (CSP)
sp|P60904|DNJC5_MOUSE DnaJ homolog subfamily C member 5 (Cysteine string protein) (CSP)
Length = 198
Score = 67.0 bits (162), Expect = 3e-11
Identities = 32/69 (46%), Positives = 44/69 (63%)
Frame = +1
Query: 4 EDPNAAEKFKEISKAYSVLTDTRKRRIYDKYGSFGLDVANQLGDDKAEFFLKFENPCVKV 183
++P AA+KFKEI+ A+++LTD KR IYDKYGS GL VA Q G++ + + K
Sbjct: 49 DNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLYVAEQFGEENVNTYFVLSSWWAKA 108
Query: 184 LLVLMCLFT 210
L V+ L T
Sbjct: 109 LFVVCGLLT 117
>sp|Q9H3Z4|DNJC5_HUMAN DnaJ homolog subfamily C member 5 (Cysteine string protein) (CSP)
Length = 198
Score = 66.6 bits (161), Expect = 3e-11
Identities = 32/69 (46%), Positives = 43/69 (62%)
Frame = +1
Query: 4 EDPNAAEKFKEISKAYSVLTDTRKRRIYDKYGSFGLDVANQLGDDKAEFFLKFENPCVKV 183
++P AA+KFKEI+ A+++LTD KR IYDKYGS GL VA Q G++ + + K
Sbjct: 49 DNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLYVAEQFGEENVNTYFVLSSWWAKA 108
Query: 184 LLVLMCLFT 210
L V L T
Sbjct: 109 LFVFCGLLT 117
>sp|Q29455|DNJC5_BOVIN DnaJ homolog subfamily C member 5 (Cysteine string protein) (CSP)
Length = 198
Score = 66.2 bits (160), Expect = 4e-11
Identities = 31/69 (44%), Positives = 43/69 (62%)
Frame = +1
Query: 4 EDPNAAEKFKEISKAYSVLTDTRKRRIYDKYGSFGLDVANQLGDDKAEFFLKFENPCVKV 183
++P AA+KFKEI+ A+++LTD KR IYDKYGS GL VA Q G++ + + K
Sbjct: 49 DNPEAADKFKEINNAHAILTDATKRNIYDKYGSLGLYVAEQFGEENVNTYFVLSSWWAKA 108
Query: 184 LLVLMCLFT 210
L + L T
Sbjct: 109 LFIFCGLLT 117
>sp|P56101|CSP_TORCA Cysteine string protein (CCCS1)
Length = 195
Score = 65.5 bits (158), Expect = 8e-11
Identities = 31/69 (44%), Positives = 43/69 (62%)
Frame = +1
Query: 4 EDPNAAEKFKEISKAYSVLTDTRKRRIYDKYGSFGLDVANQLGDDKAEFFLKFENPCVKV 183
++P A+EKFKEI+ A+++LTD KR IYDKYGS GL VA Q G++ + + K
Sbjct: 49 DNPEASEKFKEINNAHAILTDATKRNIYDKYGSLGLYVAEQFGEENVNTYFVLSSWWAKA 108
Query: 184 LLVLMCLFT 210
L V + T
Sbjct: 109 LFVFCGVIT 117
>sp|O42196|CSP_XENLA Cysteine string protein (CSP) (Xcsp)
Length = 197
Score = 63.5 bits (153), Expect = 3e-10
Identities = 30/69 (43%), Positives = 42/69 (60%)
Frame = +1
Query: 4 EDPNAAEKFKEISKAYSVLTDTRKRRIYDKYGSFGLDVANQLGDDKAEFFLKFENPCVKV 183
++P A+EKFKEI+ A+ +L D+ KR IYDKYGS GL VA Q G++ + + K
Sbjct: 49 DNPEASEKFKEINNAHGILADSTKRNIYDKYGSLGLYVAEQFGEENVNTYFVLSSWWAKA 108
Query: 184 LLVLMCLFT 210
L + L T
Sbjct: 109 LFMFCGLIT 117
>sp|Q03751|CSP_DROME Cysteine string protein
Length = 249
Score = 63.2 bits (152), Expect = 4e-10
Identities = 26/69 (37%), Positives = 46/69 (66%)
Frame = +1
Query: 4 EDPNAAEKFKEISKAYSVLTDTRKRRIYDKYGSFGLDVANQLGDDKAEFFLKFENPCVKV 183
++ +AA+KFKE+++A+S+L++ KR IYD YGS GL +A Q G++ + +P VK
Sbjct: 51 DNVDAADKFKEVNRAHSILSNQTKRNIYDNYGSLGLYIAEQFGEENVNAYFVVTSPAVKA 110
Query: 184 LLVLMCLFT 210
+++ + T
Sbjct: 111 VVICCAVIT 119
>sp|Q8N7S2|DNJ5G_HUMAN DnaJ homolog subfamily C member 5G (Gamma cysteine string protein)
(Gamma-CSP)
Length = 189
Score = 55.1 bits (131), Expect = 1e-07
Identities = 24/65 (36%), Positives = 44/65 (67%)
Frame = +1
Query: 16 AAEKFKEISKAYSVLTDTRKRRIYDKYGSFGLDVANQLGDDKAEFFLKFENPCVKVLLVL 195
AAE FKEI+ A+++L+D++KR+IYD++GS G+ + + G++ ++ + K L++L
Sbjct: 71 AAEIFKEINAAHAILSDSKKRKIYDQHGSLGIYLYDHFGEEGVRYYFILNSCWFKTLVIL 130
Query: 196 MCLFT 210
L T
Sbjct: 131 CTLLT 135
>sp|O27352|DNAJ_METTH Chaperone protein dnaJ
Length = 376
Score = 53.5 bits (127), Expect = 3e-07
Identities = 24/41 (58%), Positives = 33/41 (80%)
Frame = +1
Query: 4 EDPNAAEKFKEISKAYSVLTDTRKRRIYDKYGSFGLDVANQ 126
+DP+AAEKFKEIS+AY+VL+D KR YD++G G+D +Q
Sbjct: 38 DDPDAAEKFKEISEAYAVLSDDEKRARYDRFGHAGMDGFSQ 78
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,479,940
Number of Sequences: 369166
Number of extensions: 801684
Number of successful extensions: 2425
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2423
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3502236525
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)