Planaria EST Database


DrC_02923

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02923
         (842 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q01173|TPM1_XENLA  Tropomyosin 1 alpha chain (Alpha-tropo...    35   0.26 
sp|P04268|TPM1_CHICK  Tropomyosin 1 alpha chain (Alpha-tropo...    35   0.26 
sp|P13105|TPM1_RANTE  Tropomyosin 1 alpha chain (Alpha-tropo...    35   0.26 
sp|P58772|TPM1_RABIT  Tropomyosin 1 alpha chain (Alpha-tropo...    35   0.34 
sp|P09493|TPM1_HUMAN  Tropomyosin 1 alpha chain (Alpha-tropo...    35   0.34 
sp|P04692|TPM1_RAT  Tropomyosin 1 alpha chain (Alpha-tropomy...    35   0.34 
sp|P42639|TPM1_PIG  Tropomyosin 1 alpha chain (Alpha-tropomy...    35   0.34 
sp|P22480|ATPE_BACPF  ATP synthase epsilon chain (ATP syntha...    35   0.34 
sp|P84335|TPM1_LIZAU  Tropomyosin 1 alpha chain (Alpha-tropo...    34   0.58 
sp|P25386|USO1_YEAST  Intracellular protein transport protei...    33   0.76 
>sp|Q01173|TPM1_XENLA Tropomyosin 1 alpha chain (Alpha-tropomyosin)
          Length = 284

 Score = 35.0 bits (79), Expect = 0.26
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
 Frame = +3

Query: 204 FEKVNNKLDIITSKIGNLENIIELSSARAAYV-KTVTSINNNYKALE-EAQKENTKEGYG 377
           +E+V  KL II   +   E   ELS ++ A + + + ++ NN K+LE +A+K + KE   
Sbjct: 162 YEEVARKLVIIEGDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQKE--- 218

Query: 378 FFAKQYENSFEFATENIYDAMT 443
               +YE   +  T+ + +A T
Sbjct: 219 ---DKYEEEIKVLTDKLKEAET 237
>sp|P04268|TPM1_CHICK Tropomyosin 1 alpha chain (Alpha-tropomyosin)
 sp|P58773|TPM1_COTJA Tropomyosin 1 alpha chain (Alpha-tropomyosin)
          Length = 284

 Score = 35.0 bits (79), Expect = 0.26
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
 Frame = +3

Query: 204 FEKVNNKLDIITSKIGNLENIIELSSARAAYV-KTVTSINNNYKALE-EAQKENTKEGYG 377
           +E+V  KL II   +   E   ELS ++ A + + + ++ NN K+LE +A+K + KE   
Sbjct: 162 YEEVARKLVIIEGDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQKE--- 218

Query: 378 FFAKQYENSFEFATENIYDAMT 443
               +YE   +  T+ + +A T
Sbjct: 219 ---DKYEEEIKVLTDKLKEAET 237
>sp|P13105|TPM1_RANTE Tropomyosin 1 alpha chain (Alpha-tropomyosin)
          Length = 284

 Score = 35.0 bits (79), Expect = 0.26
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
 Frame = +3

Query: 204 FEKVNNKLDIITSKIGNLENIIELSSARAAYV-KTVTSINNNYKALE-EAQKENTKEGYG 377
           +E+V  KL II   +   E   ELS ++ A + + + ++ NN K+LE +A+K + KE   
Sbjct: 162 YEEVARKLVIIEGDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQKE--- 218

Query: 378 FFAKQYENSFEFATENIYDAMT 443
               +YE   +  T+ + +A T
Sbjct: 219 ---DKYEEEIKVLTDKLKEAET 237
>sp|P58772|TPM1_RABIT Tropomyosin 1 alpha chain (Alpha-tropomyosin)
 sp|P58771|TPM1_MOUSE Tropomyosin 1 alpha chain (Alpha-tropomyosin)
          Length = 284

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
 Frame = +3

Query: 204 FEKVNNKLDIITSKIGNLENIIELSSARAAYV-KTVTSINNNYKALE-EAQKENTKEGYG 377
           +E+V  KL II S +   E   ELS  + A + + + ++ NN K+LE +A+K + KE   
Sbjct: 162 YEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKE--- 218

Query: 378 FFAKQYENSFEFATENIYDAMT 443
               +YE   +  ++ + +A T
Sbjct: 219 ---DKYEEEIKVLSDKLKEAET 237
>sp|P09493|TPM1_HUMAN Tropomyosin 1 alpha chain (Alpha-tropomyosin)
          Length = 284

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
 Frame = +3

Query: 204 FEKVNNKLDIITSKIGNLENIIELSSARAAYV-KTVTSINNNYKALE-EAQKENTKEGYG 377
           +E+V  KL II S +   E   ELS  + A + + + ++ NN K+LE +A+K + KE   
Sbjct: 162 YEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKE--- 218

Query: 378 FFAKQYENSFEFATENIYDAMT 443
               +YE   +  ++ + +A T
Sbjct: 219 ---DRYEEEIKVLSDKLKEAET 237
>sp|P04692|TPM1_RAT Tropomyosin 1 alpha chain (Alpha-tropomyosin)
          Length = 284

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
 Frame = +3

Query: 204 FEKVNNKLDIITSKIGNLENIIELSSARAAYV-KTVTSINNNYKALE-EAQKENTKEGYG 377
           +E+V  KL II S +   E   ELS  + A + + + ++ NN K+LE +A+K + KE   
Sbjct: 162 YEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKE--- 218

Query: 378 FFAKQYENSFEFATENIYDAMT 443
               +YE   +  ++ + +A T
Sbjct: 219 ---DKYEEEIKVLSDKLKEAET 237
>sp|P42639|TPM1_PIG Tropomyosin 1 alpha chain (Alpha-tropomyosin)
          Length = 284

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
 Frame = +3

Query: 204 FEKVNNKLDIITSKIGNLENIIELSSARAAYV-KTVTSINNNYKALE-EAQKENTKEGYG 377
           +E+V  KL II S +   E   ELS  + A + + + ++ NN K+LE +A+K + KE   
Sbjct: 162 YEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKE--- 218

Query: 378 FFAKQYENSFEFATENIYDAMT 443
               +YE   +  ++ + +A T
Sbjct: 219 ---DKYEEEIKVLSDKLKEAET 237
>sp|P22480|ATPE_BACPF ATP synthase epsilon chain (ATP synthase F1 sector epsilon subunit)
          Length = 133

 Score = 34.7 bits (78), Expect = 0.34
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
 Frame = +3

Query: 90  TVLGALG--PAAMAISAVLSIVTIFLPKEDSPELKAIKAGFEKVNNKLDIITSKIGNLEN 263
           TV G LG  P  + + A L++  + L K +S E  A+  GF +V      I ++   L +
Sbjct: 27  TVEGELGILPKHIPLVAPLTVGAVRLKKGNSEEQVAVSGGFVEVRPDQVTILAEAAELPS 86

Query: 264 IIELSSARAAYVKTVTSINN 323
            I++  ARAA  +  + +N+
Sbjct: 87  AIDVDRARAAKERAESRLNS 106
>sp|P84335|TPM1_LIZAU Tropomyosin 1 alpha chain (Alpha-tropomyosin)
          Length = 284

 Score = 33.9 bits (76), Expect = 0.58
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
 Frame = +3

Query: 204 FEKVNNKLDIITSKIGNLENIIELSSARAAYV-KTVTSINNNYKALE-EAQKENTKEGYG 377
           +E+V  KL II   +   E   ELS ++ + + + + ++ NN K+LE +A+K + KE   
Sbjct: 162 YEEVARKLVIIEGDLERTEERAELSESKCSELEEELKTVTNNLKSLEAQAEKYSQKE--- 218

Query: 378 FFAKQYENSFEFATENIYDAMT 443
               +YE   +  T+ + +A T
Sbjct: 219 ---DKYEEEIKVLTDKLKEAET 237
>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1 (Int-1)
          Length = 1790

 Score = 33.5 bits (75), Expect = 0.76
 Identities = 17/48 (35%), Positives = 30/48 (62%)
 Frame = +3

Query: 699  KDYAYQQFKDTYREMGGSNQQFAEKIAKDLNNVAPQRSWLAVAYNDAS 842
            K+ A+++ +DT ++   S +Q  EK+AK+L+N+  + S L  A  D S
Sbjct: 1692 KEQAWKRDEDTVKKTTDSQRQEIEKLAKELDNLKAENSKLKEANEDRS 1739
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,896,713
Number of Sequences: 369166
Number of extensions: 1662748
Number of successful extensions: 4729
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4728
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8245425915
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)