Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02923
(842 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q01173|TPM1_XENLA Tropomyosin 1 alpha chain (Alpha-tropo... 35 0.26
sp|P04268|TPM1_CHICK Tropomyosin 1 alpha chain (Alpha-tropo... 35 0.26
sp|P13105|TPM1_RANTE Tropomyosin 1 alpha chain (Alpha-tropo... 35 0.26
sp|P58772|TPM1_RABIT Tropomyosin 1 alpha chain (Alpha-tropo... 35 0.34
sp|P09493|TPM1_HUMAN Tropomyosin 1 alpha chain (Alpha-tropo... 35 0.34
sp|P04692|TPM1_RAT Tropomyosin 1 alpha chain (Alpha-tropomy... 35 0.34
sp|P42639|TPM1_PIG Tropomyosin 1 alpha chain (Alpha-tropomy... 35 0.34
sp|P22480|ATPE_BACPF ATP synthase epsilon chain (ATP syntha... 35 0.34
sp|P84335|TPM1_LIZAU Tropomyosin 1 alpha chain (Alpha-tropo... 34 0.58
sp|P25386|USO1_YEAST Intracellular protein transport protei... 33 0.76
>sp|Q01173|TPM1_XENLA Tropomyosin 1 alpha chain (Alpha-tropomyosin)
Length = 284
Score = 35.0 bits (79), Expect = 0.26
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +3
Query: 204 FEKVNNKLDIITSKIGNLENIIELSSARAAYV-KTVTSINNNYKALE-EAQKENTKEGYG 377
+E+V KL II + E ELS ++ A + + + ++ NN K+LE +A+K + KE
Sbjct: 162 YEEVARKLVIIEGDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQKE--- 218
Query: 378 FFAKQYENSFEFATENIYDAMT 443
+YE + T+ + +A T
Sbjct: 219 ---DKYEEEIKVLTDKLKEAET 237
>sp|P04268|TPM1_CHICK Tropomyosin 1 alpha chain (Alpha-tropomyosin)
sp|P58773|TPM1_COTJA Tropomyosin 1 alpha chain (Alpha-tropomyosin)
Length = 284
Score = 35.0 bits (79), Expect = 0.26
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +3
Query: 204 FEKVNNKLDIITSKIGNLENIIELSSARAAYV-KTVTSINNNYKALE-EAQKENTKEGYG 377
+E+V KL II + E ELS ++ A + + + ++ NN K+LE +A+K + KE
Sbjct: 162 YEEVARKLVIIEGDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQKE--- 218
Query: 378 FFAKQYENSFEFATENIYDAMT 443
+YE + T+ + +A T
Sbjct: 219 ---DKYEEEIKVLTDKLKEAET 237
>sp|P13105|TPM1_RANTE Tropomyosin 1 alpha chain (Alpha-tropomyosin)
Length = 284
Score = 35.0 bits (79), Expect = 0.26
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +3
Query: 204 FEKVNNKLDIITSKIGNLENIIELSSARAAYV-KTVTSINNNYKALE-EAQKENTKEGYG 377
+E+V KL II + E ELS ++ A + + + ++ NN K+LE +A+K + KE
Sbjct: 162 YEEVARKLVIIEGDLERAEERAELSESKCAELEEELKTVTNNLKSLEAQAEKYSQKE--- 218
Query: 378 FFAKQYENSFEFATENIYDAMT 443
+YE + T+ + +A T
Sbjct: 219 ---DKYEEEIKVLTDKLKEAET 237
>sp|P58772|TPM1_RABIT Tropomyosin 1 alpha chain (Alpha-tropomyosin)
sp|P58771|TPM1_MOUSE Tropomyosin 1 alpha chain (Alpha-tropomyosin)
Length = 284
Score = 34.7 bits (78), Expect = 0.34
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +3
Query: 204 FEKVNNKLDIITSKIGNLENIIELSSARAAYV-KTVTSINNNYKALE-EAQKENTKEGYG 377
+E+V KL II S + E ELS + A + + + ++ NN K+LE +A+K + KE
Sbjct: 162 YEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKE--- 218
Query: 378 FFAKQYENSFEFATENIYDAMT 443
+YE + ++ + +A T
Sbjct: 219 ---DKYEEEIKVLSDKLKEAET 237
>sp|P09493|TPM1_HUMAN Tropomyosin 1 alpha chain (Alpha-tropomyosin)
Length = 284
Score = 34.7 bits (78), Expect = 0.34
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +3
Query: 204 FEKVNNKLDIITSKIGNLENIIELSSARAAYV-KTVTSINNNYKALE-EAQKENTKEGYG 377
+E+V KL II S + E ELS + A + + + ++ NN K+LE +A+K + KE
Sbjct: 162 YEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKE--- 218
Query: 378 FFAKQYENSFEFATENIYDAMT 443
+YE + ++ + +A T
Sbjct: 219 ---DRYEEEIKVLSDKLKEAET 237
>sp|P04692|TPM1_RAT Tropomyosin 1 alpha chain (Alpha-tropomyosin)
Length = 284
Score = 34.7 bits (78), Expect = 0.34
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +3
Query: 204 FEKVNNKLDIITSKIGNLENIIELSSARAAYV-KTVTSINNNYKALE-EAQKENTKEGYG 377
+E+V KL II S + E ELS + A + + + ++ NN K+LE +A+K + KE
Sbjct: 162 YEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKE--- 218
Query: 378 FFAKQYENSFEFATENIYDAMT 443
+YE + ++ + +A T
Sbjct: 219 ---DKYEEEIKVLSDKLKEAET 237
>sp|P42639|TPM1_PIG Tropomyosin 1 alpha chain (Alpha-tropomyosin)
Length = 284
Score = 34.7 bits (78), Expect = 0.34
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +3
Query: 204 FEKVNNKLDIITSKIGNLENIIELSSARAAYV-KTVTSINNNYKALE-EAQKENTKEGYG 377
+E+V KL II S + E ELS + A + + + ++ NN K+LE +A+K + KE
Sbjct: 162 YEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEAQAEKYSQKE--- 218
Query: 378 FFAKQYENSFEFATENIYDAMT 443
+YE + ++ + +A T
Sbjct: 219 ---DKYEEEIKVLSDKLKEAET 237
>sp|P22480|ATPE_BACPF ATP synthase epsilon chain (ATP synthase F1 sector epsilon subunit)
Length = 133
Score = 34.7 bits (78), Expect = 0.34
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = +3
Query: 90 TVLGALG--PAAMAISAVLSIVTIFLPKEDSPELKAIKAGFEKVNNKLDIITSKIGNLEN 263
TV G LG P + + A L++ + L K +S E A+ GF +V I ++ L +
Sbjct: 27 TVEGELGILPKHIPLVAPLTVGAVRLKKGNSEEQVAVSGGFVEVRPDQVTILAEAAELPS 86
Query: 264 IIELSSARAAYVKTVTSINN 323
I++ ARAA + + +N+
Sbjct: 87 AIDVDRARAAKERAESRLNS 106
>sp|P84335|TPM1_LIZAU Tropomyosin 1 alpha chain (Alpha-tropomyosin)
Length = 284
Score = 33.9 bits (76), Expect = 0.58
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Frame = +3
Query: 204 FEKVNNKLDIITSKIGNLENIIELSSARAAYV-KTVTSINNNYKALE-EAQKENTKEGYG 377
+E+V KL II + E ELS ++ + + + + ++ NN K+LE +A+K + KE
Sbjct: 162 YEEVARKLVIIEGDLERTEERAELSESKCSELEEELKTVTNNLKSLEAQAEKYSQKE--- 218
Query: 378 FFAKQYENSFEFATENIYDAMT 443
+YE + T+ + +A T
Sbjct: 219 ---DKYEEEIKVLTDKLKEAET 237
>sp|P25386|USO1_YEAST Intracellular protein transport protein USO1 (Int-1)
Length = 1790
Score = 33.5 bits (75), Expect = 0.76
Identities = 17/48 (35%), Positives = 30/48 (62%)
Frame = +3
Query: 699 KDYAYQQFKDTYREMGGSNQQFAEKIAKDLNNVAPQRSWLAVAYNDAS 842
K+ A+++ +DT ++ S +Q EK+AK+L+N+ + S L A D S
Sbjct: 1692 KEQAWKRDEDTVKKTTDSQRQEIEKLAKELDNLKAENSKLKEANEDRS 1739
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,896,713
Number of Sequences: 369166
Number of extensions: 1662748
Number of successful extensions: 4729
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4728
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8245425915
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)