Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02915
(212 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P47465|Y223_MYCGE Hypothetical protein MG223 29 2.9
sp|O35245|PKD2_MOUSE Polycystin-2 29 2.9
sp|Q9P0L9|PK2L1_HUMAN Polycystic kidney disease 2-like 1 pr... 29 3.8
sp|Q13563|PKD2_HUMAN Polycystin-2 (Autosomal dominant polyc... 29 3.8
sp|Q9JLG4|PK2L2_MOUSE Polycystic kidney disease 2-like 2 pr... 28 5.0
sp|Q9NZM6|PK2L2_HUMAN Polycystic kidney disease 2-like 2 pr... 28 5.0
sp|Q6XP49|GLIS3_MOUSE Zinc finger protein GLIS3 (GLI-simila... 28 8.5
>sp|P47465|Y223_MYCGE Hypothetical protein MG223
Length = 411
Score = 29.3 bits (64), Expect = 2.9
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +1
Query: 58 QFRPIINDKVNQMNFVFTKK----AHYRLQKLKNHLQRKLG*KKPIDFDYYF 201
Q + +++D NQ N +F + Y Q+LKN L+ KL + +D YF
Sbjct: 17 QIQLVVSDDQNQFNILFYQTIDNDGFYSKQQLKNKLRLKLALNQLVDQANYF 68
>sp|O35245|PKD2_MOUSE Polycystin-2
Length = 966
Score = 29.3 bits (64), Expect = 2.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 1 LEPYYFFGHVLAMFFVLTLQFRPIINDKVNQM 96
L P YF V MFF+L F IIND +++
Sbjct: 654 LGPLYFTTFVFFMFFILLNMFLAIINDSYSEV 685
>sp|Q9P0L9|PK2L1_HUMAN Polycystic kidney disease 2-like 1 protein (Polycystin-L)
(Polycystin 2 homolog)
Length = 805
Score = 28.9 bits (63), Expect = 3.8
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 1 LEPYYFFGHVLAMFFVLTLQFRPIINDKVNQM 96
L P YF +V +FFVL F IIND +++
Sbjct: 536 LGPAYFVTYVFFVFFVLLNMFLAIINDTYSEV 567
>sp|Q13563|PKD2_HUMAN Polycystin-2 (Autosomal dominant polycystic kidney disease type II
protein) (Polycystwin) (R48321)
Length = 968
Score = 28.9 bits (63), Expect = 3.8
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 1 LEPYYFFGHVLAMFFVLTLQFRPIINDKVNQM 96
L P YF V MFF+L F IIND +++
Sbjct: 656 LGPIYFTTFVFFMFFILLNMFLAIINDTYSEV 687
>sp|Q9JLG4|PK2L2_MOUSE Polycystic kidney disease 2-like 2 protein (Polycystin-L2)
Length = 621
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 1 LEPYYFFGHVLAMFFVLTLQFRPIINDKVNQM--NFVFTKKAHYRLQKL 141
L P YF + +FFVL F IIND +++ ++ ++ + L K+
Sbjct: 466 LGPIYFITFIFFVFFVLLNMFLAIINDTYSEVKADYSIGRRPDFELGKI 514
>sp|Q9NZM6|PK2L2_HUMAN Polycystic kidney disease 2-like 2 protein (Polycystin-L2)
Length = 624
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 1 LEPYYFFGHVLAMFFVLTLQFRPIINDKVNQM--NFVFTKKAHYRLQKL 141
L P YF + +FFVL F IIND +++ ++ ++ + L K+
Sbjct: 466 LGPIYFITFIFFVFFVLLNMFLAIINDTYSEVKADYSIGRRPDFELGKM 514
>sp|Q6XP49|GLIS3_MOUSE Zinc finger protein GLIS3 (GLI-similar 3)
Length = 780
Score = 27.7 bits (60), Expect = 8.5
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +1
Query: 43 FVLTLQFRPIINDKVNQMNFVFTKKAHYRLQKLKNHLQRKLG*K 174
+ L + R +K N+ F KKA RL+ LK HL+ G K
Sbjct: 397 YKLLIHMRVHSGEKPNKCTFEGCKKAFSRLENLKIHLRSHTGEK 440
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,100,557
Number of Sequences: 369166
Number of extensions: 327691
Number of successful extensions: 592
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 68,354,980
effective HSP length: 42
effective length of database: 60,596,110
effective search space used: 1696691080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)