Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02908
(828 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O42043|ENK7_HUMAN HERV-K_1q23.3 provirus ancestral Env p... 30 6.2
sp|Q9Y2L6|FRM4B_HUMAN FERM domain containing protein 4B 30 6.2
sp|Q10432|YQ37_SCHPO Hypothetical protein C188.07 in chromo... 30 8.1
sp|Q6UB98|ANR12_HUMAN Ankyrin repeat domain protein 12 (Ank... 30 8.1
sp|Q8K9D3|CYSJ_BUCAP Sulfite reductase [NADPH] flavoprotein... 30 8.1
sp|P92699|NU5M_PONPA NADH-ubiquinone oxidoreductase chain 5... 30 8.1
>sp|O42043|ENK7_HUMAN HERV-K_1q23.3 provirus ancestral Env polyprotein (Envelope
polyprotein) (HERV-K18 envelope protein) (HERV-K110
envelope protein) (IDDMK1,2 22 envelope protein)
(HERV-K(C1a) envelope protein) (HERV-K18 superantigen)
(IDDMK1,2 22 superantigen) [Contains: Surface protein
(SU); Transmembrane protein (TM)]
Length = 560
Score = 30.4 bits (67), Expect = 6.2
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 331 SVDKSLDDGLDEELIKQPLSHKIWSWERT--SLPGPKYIIP 447
+VD L + LD+ K+ S +W WE S P PK I P
Sbjct: 179 AVDSDLTESLDKHKHKKLQSFYLWEWEEKGISTPRPKIISP 219
>sp|Q9Y2L6|FRM4B_HUMAN FERM domain containing protein 4B
Length = 1062
Score = 30.4 bits (67), Expect = 6.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 500 LLSFPKRTLTRHSSFLFAADRVYQQLIRLNGL 595
L +FP +TL H S + DRV + +++ GL
Sbjct: 233 LPAFPTKTLQEHPSLAYCEDRVIEHYLKIKGL 264
>sp|Q10432|YQ37_SCHPO Hypothetical protein C188.07 in chromosome III
Length = 735
Score = 30.0 bits (66), Expect = 8.1
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
Frame = +1
Query: 139 EIKEEMSC---EFPIEMKNRSLSSSLMIDGKSSQLKKFNPIINRNKNSHLVSPAPIQYER 309
+++E +SC E P K R + L D S+ ++ ++ + P P+Q +
Sbjct: 56 KLEEPLSCMRNEEPAS-KQREIEKFLRTDLDHSENDFLTQEVDEFPSTQQLFPIPLQNDT 114
Query: 310 AFVLKENSVDKS-------LDDGLDEELIKQPLSHKI 399
AF E S+ KS LD GL +++ + H++
Sbjct: 115 AFDSSEESITKSSKSSFSVLDIGLPMSALQRKMMHRL 151
>sp|Q6UB98|ANR12_HUMAN Ankyrin repeat domain protein 12 (Ankyrin repeat-containing cofactor
2) (GAC-1 protein)
Length = 2062
Score = 30.0 bits (66), Expect = 8.1
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Frame = +1
Query: 106 EKSNSRNRNIIEIK---EEMSCEFPIEMKNRSLS---SSLMIDGKSSQLKKFNPIINRNK 267
EK RNRN +E+K +E + P E KN+ L+ SS + D + + + + + NR++
Sbjct: 1106 EKERLRNRNCLELKIKDKEKTKHTPTESKNKELTRSKSSEVTDAYTKEKQPKDAVSNRSQ 1165
Query: 268 N 270
+
Sbjct: 1166 S 1166
>sp|Q8K9D3|CYSJ_BUCAP Sulfite reductase [NADPH] flavoprotein alpha-component (SIR-FP)
Length = 602
Score = 30.0 bits (66), Expect = 8.1
Identities = 16/63 (25%), Positives = 35/63 (55%)
Frame = +1
Query: 55 PKRLSSDELNAKINPINEKSNSRNRNIIEIKEEMSCEFPIEMKNRSLSSSLMIDGKSSQL 234
PK+LSS +L + + P+ + S + + E+ +E+ + + + +S ++ + G SS L
Sbjct: 371 PKKLSSQQLISILRPLKPRLYSISSSQSEMNDEV--HITVGVVKKQISGTIHLGGSSSYL 428
Query: 235 KKF 243
+F
Sbjct: 429 SQF 431
>sp|P92699|NU5M_PONPA NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 603
Score = 30.0 bits (66), Expect = 8.1
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = -1
Query: 309 SLVLDWCWTDEMRILVSIDYWIELFQL*TLPI 214
++V +WCWT + +S+ + ++ F + LP+
Sbjct: 61 TIVTNWCWTTTQTLQLSLSFKLDYFSMTFLPV 92
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.315 0.132 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,727,507
Number of Sequences: 369166
Number of extensions: 1952674
Number of successful extensions: 4805
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4803
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8004331590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)