Planaria EST Database


DrC_02908

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02908
         (828 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O42043|ENK7_HUMAN  HERV-K_1q23.3 provirus ancestral Env p...    30   6.2  
sp|Q9Y2L6|FRM4B_HUMAN  FERM domain containing protein 4B           30   6.2  
sp|Q10432|YQ37_SCHPO  Hypothetical protein C188.07 in chromo...    30   8.1  
sp|Q6UB98|ANR12_HUMAN  Ankyrin repeat domain protein 12 (Ank...    30   8.1  
sp|Q8K9D3|CYSJ_BUCAP  Sulfite reductase [NADPH] flavoprotein...    30   8.1  
sp|P92699|NU5M_PONPA  NADH-ubiquinone oxidoreductase chain 5...    30   8.1  
>sp|O42043|ENK7_HUMAN HERV-K_1q23.3 provirus ancestral Env polyprotein (Envelope
           polyprotein) (HERV-K18 envelope protein) (HERV-K110
           envelope protein) (IDDMK1,2 22 envelope protein)
           (HERV-K(C1a) envelope protein) (HERV-K18 superantigen)
           (IDDMK1,2 22 superantigen) [Contains: Surface protein
           (SU); Transmembrane protein (TM)]
          Length = 560

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 331 SVDKSLDDGLDEELIKQPLSHKIWSWERT--SLPGPKYIIP 447
           +VD  L + LD+   K+  S  +W WE    S P PK I P
Sbjct: 179 AVDSDLTESLDKHKHKKLQSFYLWEWEEKGISTPRPKIISP 219
>sp|Q9Y2L6|FRM4B_HUMAN FERM domain containing protein 4B
          Length = 1062

 Score = 30.4 bits (67), Expect = 6.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 500 LLSFPKRTLTRHSSFLFAADRVYQQLIRLNGL 595
           L +FP +TL  H S  +  DRV +  +++ GL
Sbjct: 233 LPAFPTKTLQEHPSLAYCEDRVIEHYLKIKGL 264
>sp|Q10432|YQ37_SCHPO Hypothetical protein C188.07 in chromosome III
          Length = 735

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 10/97 (10%)
 Frame = +1

Query: 139 EIKEEMSC---EFPIEMKNRSLSSSLMIDGKSSQLKKFNPIINRNKNSHLVSPAPIQYER 309
           +++E +SC   E P   K R +   L  D   S+       ++   ++  + P P+Q + 
Sbjct: 56  KLEEPLSCMRNEEPAS-KQREIEKFLRTDLDHSENDFLTQEVDEFPSTQQLFPIPLQNDT 114

Query: 310 AFVLKENSVDKS-------LDDGLDEELIKQPLSHKI 399
           AF   E S+ KS       LD GL    +++ + H++
Sbjct: 115 AFDSSEESITKSSKSSFSVLDIGLPMSALQRKMMHRL 151
>sp|Q6UB98|ANR12_HUMAN Ankyrin repeat domain protein 12 (Ankyrin repeat-containing cofactor
            2) (GAC-1 protein)
          Length = 2062

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
 Frame = +1

Query: 106  EKSNSRNRNIIEIK---EEMSCEFPIEMKNRSLS---SSLMIDGKSSQLKKFNPIINRNK 267
            EK   RNRN +E+K   +E +   P E KN+ L+   SS + D  + + +  + + NR++
Sbjct: 1106 EKERLRNRNCLELKIKDKEKTKHTPTESKNKELTRSKSSEVTDAYTKEKQPKDAVSNRSQ 1165

Query: 268  N 270
            +
Sbjct: 1166 S 1166
>sp|Q8K9D3|CYSJ_BUCAP Sulfite reductase [NADPH] flavoprotein alpha-component (SIR-FP)
          Length = 602

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 16/63 (25%), Positives = 35/63 (55%)
 Frame = +1

Query: 55  PKRLSSDELNAKINPINEKSNSRNRNIIEIKEEMSCEFPIEMKNRSLSSSLMIDGKSSQL 234
           PK+LSS +L + + P+  +  S + +  E+ +E+     + +  + +S ++ + G SS L
Sbjct: 371 PKKLSSQQLISILRPLKPRLYSISSSQSEMNDEV--HITVGVVKKQISGTIHLGGSSSYL 428

Query: 235 KKF 243
            +F
Sbjct: 429 SQF 431
>sp|P92699|NU5M_PONPA NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
           5)
          Length = 603

 Score = 30.0 bits (66), Expect = 8.1
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -1

Query: 309 SLVLDWCWTDEMRILVSIDYWIELFQL*TLPI 214
           ++V +WCWT    + +S+ + ++ F +  LP+
Sbjct: 61  TIVTNWCWTTTQTLQLSLSFKLDYFSMTFLPV 92
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.315    0.132    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,727,507
Number of Sequences: 369166
Number of extensions: 1952674
Number of successful extensions: 4805
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4803
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8004331590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)