Planaria EST Database


DrC_02895

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02895
         (252 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8NGH3|OR2D3_HUMAN  Olfactory receptor 2D3                      30   1.7  
sp|Q6E3D0|CBP1_CAEBR  Cytoplasmic polyadenylation element bi...    28   8.5  
>sp|Q8NGH3|OR2D3_HUMAN Olfactory receptor 2D3
          Length = 314

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
 Frame = +3

Query: 6   ITLYFCKISALFPVLSV*SFDVIKCLFSNGKYL------IILGTKTHR*ATLIKQQPRMG 167
           I  YFC+  AL  + S+ ++     +FS G  +      +ILG+  +  +T+I+ Q   G
Sbjct: 174 INHYFCEPPALLKLASIDTYSTEMAIFSMGVVILLAPVSLILGSYWNIISTVIQMQSGEG 233

Query: 168 QLDYFSS 188
           +L  FS+
Sbjct: 234 RLKAFST 240
>sp|Q6E3D0|CBP1_CAEBR Cytoplasmic polyadenylation element binding protein 1
          Length = 585

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 78  CLFSNGKYLIILGTKTHR*ATLIKQQPRMGQLDYFSSYKI 197
           C F +GKY + L + T +   +  +  R+  +DYFS  K+
Sbjct: 328 CEFYDGKYYLQLSSPTMQDKAVQVRPWRLSDIDYFSEEKV 367
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,246,250
Number of Sequences: 369166
Number of extensions: 384552
Number of successful extensions: 754
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 68,354,980
effective HSP length: 54
effective length of database: 58,379,290
effective search space used: 1692999410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)