Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02895
(252 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8NGH3|OR2D3_HUMAN Olfactory receptor 2D3 30 1.7
sp|Q6E3D0|CBP1_CAEBR Cytoplasmic polyadenylation element bi... 28 8.5
>sp|Q8NGH3|OR2D3_HUMAN Olfactory receptor 2D3
Length = 314
Score = 30.0 bits (66), Expect = 1.7
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 6/67 (8%)
Frame = +3
Query: 6 ITLYFCKISALFPVLSV*SFDVIKCLFSNGKYL------IILGTKTHR*ATLIKQQPRMG 167
I YFC+ AL + S+ ++ +FS G + +ILG+ + +T+I+ Q G
Sbjct: 174 INHYFCEPPALLKLASIDTYSTEMAIFSMGVVILLAPVSLILGSYWNIISTVIQMQSGEG 233
Query: 168 QLDYFSS 188
+L FS+
Sbjct: 234 RLKAFST 240
>sp|Q6E3D0|CBP1_CAEBR Cytoplasmic polyadenylation element binding protein 1
Length = 585
Score = 27.7 bits (60), Expect = 8.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 78 CLFSNGKYLIILGTKTHR*ATLIKQQPRMGQLDYFSSYKI 197
C F +GKY + L + T + + + R+ +DYFS K+
Sbjct: 328 CEFYDGKYYLQLSSPTMQDKAVQVRPWRLSDIDYFSEEKV 367
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,246,250
Number of Sequences: 369166
Number of extensions: 384552
Number of successful extensions: 754
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 68,354,980
effective HSP length: 54
effective length of database: 58,379,290
effective search space used: 1692999410
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)