Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02879
(757 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P58138|RK12_ASTLO Plastid 50S ribosomal protein L12 37 0.057
sp|P61243|YCF2_PHYPA Protein ycf2 37 0.057
sp|P58145|ROAA_ASTLO Ribosomal operon-associated A protein ... 37 0.075
sp|Q8D342|ARNC_WIGBR Undecaprenyl-phosphate 4-deoxy-4-forma... 36 0.098
sp|Q8K9Y8|DNAK_BUCAP Chaperone protein dnaK (Heat shock pro... 35 0.22
sp|Q89AL3|ISPZ_BUCBP Probable intracellular septation protein 34 0.49
sp|O66742|DTD_AQUAE D-tyrosyl-tRNA(Tyr) deacylase 34 0.49
sp|O51343|SYY_BORBU Tyrosyl-tRNA synthetase (Tyrosine--tRNA... 33 0.63
sp|Q8D233|RPOB_WIGBR DNA-directed RNA polymerase beta chain... 33 0.83
sp|Q89AT1|CVPA_BUCBP Colicin V production protein homolog 33 0.83
>sp|P58138|RK12_ASTLO Plastid 50S ribosomal protein L12
Length = 138
Score = 37.0 bits (84), Expect = 0.057
Identities = 25/79 (31%), Positives = 41/79 (51%)
Frame = +1
Query: 28 SSSINDVNKMFKSNRKNNVDKKIQLKTFLDENCNELNGNIQQNIIKLAKEITLKDSNKII 207
S + +V KM N+ N V K++ K +D N + N ++I+ +KEIT NK+I
Sbjct: 9 SKFVENVMKM-TVNQLNKVTKELAKKITIDSNFKSVTDN--NSVIESSKEIT---ENKVI 62
Query: 208 ESMSKNILYDHGFKQENIK 264
E + NI+ + + IK
Sbjct: 63 EKLEFNIILESFISSQRIK 81
>sp|P61243|YCF2_PHYPA Protein ycf2
Length = 2259
Score = 37.0 bits (84), Expect = 0.057
Identities = 52/248 (20%), Positives = 100/248 (40%), Gaps = 1/248 (0%)
Frame = +1
Query: 1 YFGRIENHQSSSINDVNKMFKSNRKNNVDKKIQLKTFLDENCNELNGNIQQNIIKLAKEI 180
+F +I+N + IN +NK+F N + +K + L +N N N + N ++
Sbjct: 1141 FFIKIQNENTRIINKINKLFIINSNS---EKFLINNILKKNTNNKKFNSETNKKRILS-- 1195
Query: 181 TLKDSNKIIESMSKNILYDHGFKQENIKKKAYELFDEYIXXXXXXXXXXXXXXXXXSERF 360
K+S K+I + + FK + K LF++YI F
Sbjct: 1196 FSKNSIKLIPQTERFKI----FKNSSFSLKLSSLFEKYI-----PWFFTFKWWKYFQNLF 1246
Query: 361 IDSAIKITKGIFGYAKDMFISFKNSFKVKANSILNETKTKIDQAISHVRFNKEFEQFKMK 540
++ ++I+ ++ + F +IL K +D + ++ FN
Sbjct: 1247 LNLYLEIS-----------LNISDQFYYILPTILQNRKKNLDYLVENLFFN--------- 1286
Query: 541 LRSKMHQNWDEIFSSLSRLISRYSGINLYNENNLKSEFISIINN-ETDKMIRIEEEIKEF 717
L++K N I++ SRL+ + + + EN L ++++N ++ I I +
Sbjct: 1287 LKNKFFGNSFGIWN--SRLLKQINKQHKSKENQLPWFSLNLVNKWNRHYVVTISLVIFSY 1344
Query: 718 FALSGKFS 741
F L FS
Sbjct: 1345 FILQKYFS 1352
>sp|P58145|ROAA_ASTLO Ribosomal operon-associated A protein (RoaA)
Length = 519
Score = 36.6 bits (83), Expect = 0.075
Identities = 48/185 (25%), Positives = 76/185 (41%), Gaps = 29/185 (15%)
Frame = -2
Query: 555 HFTSQFHFKLFKFFIKSDMTNSLVNLCFGFIQN*I-SFNFKRVLK*--------YEHIFC 403
++ F ++L FIK ++ +++++L I + NF+ + K Y
Sbjct: 4 NYLLSFSYRLNWDFIKWNLVDNIISLFHHEIHILSKNLNFRSIKKKQHLLFKSFYTRFVS 63
Query: 402 ISEDSFRNFYGRIN-----KSFTIFLFNIFLYNILWILVF-NIFIKQFISFLFNIFLFKS 241
+ + NF+ + N + F I F + N + L F NI I +SF FN FLF
Sbjct: 64 VRDSVDNNFFFKSNIISSKEKFFIVFFLCYKRNFFYNLFFYNIEIIN-LSFKFNFFLFYK 122
Query: 240 MIIENIFGH*FNNLVA--------------VFQGYFFSQFYYILLNVSV*FITILIQKCF 103
FNNLV VF F++ Y I LN F IL++
Sbjct: 123 FC--------FNNLVKFVMYPFLELKTENFVFNFNFYTNLYDIFLN----FKKILLKNFM 170
Query: 102 QLYFF 88
+LY+F
Sbjct: 171 KLYYF 175
Score = 36.2 bits (82), Expect = 0.098
Identities = 50/183 (27%), Positives = 76/183 (41%), Gaps = 33/183 (18%)
Frame = -2
Query: 603 TN*STQRGKYFIPILMHFTSQFHFKLFKFFIKSDMTNSLVNLCFGF---------IQN*I 451
+N + + K+FI + + F + LF + I+ ++NL F F N +
Sbjct: 76 SNIISSKEKFFIVFFLCYKRNFFYNLFFYNIE------IINLSFKFNFFLFYKFCFNNLV 129
Query: 450 SF-----------NFKRVLK*YEHIFCISEDSFRNFYGRINKSF------TIFLFNIFLY 322
F NF Y +++ D F NF + K+F TI N F Y
Sbjct: 130 KFVMYPFLELKTENFVFNFNFYTNLY----DIFLNFKKILLKNFMKLYYFTINFNNKFNY 185
Query: 321 -NILWI---LVFNI-FIKQFISFLFNIFLFKSMIIENIFGH*FNNLVAVFQGYFF--SQF 163
N W+ L FNI F+K F+ N F+F I+ IF FN L + Q F ++F
Sbjct: 186 MNKKWLYKNLTFNINFLKYFLKL--NNFIFNGSILFFIFNFMFNGLKSFIQRKCFMNNEF 243
Query: 162 YYI 154
Y+
Sbjct: 244 IYV 246
Score = 35.8 bits (81), Expect = 0.13
Identities = 46/209 (22%), Positives = 88/209 (42%), Gaps = 25/209 (11%)
Frame = -2
Query: 705 FLFYSYHFISFIVYY*NEFRF*IIFIVKIYATIPTN*STQRGKYFIP--ILMHFTSQFHF 532
F F SY+ + + Y +I+ +K Y I N K F+ + +F F+F
Sbjct: 254 FFFKSYNEFNICINY-------LIYFLK-YKGINFNFINDHVKNFLTNGLTFNFIKFFNF 305
Query: 531 KLFKFFIKSDMTNSLVNLCFGFIQN*ISFNFKRVLK*Y--EHIF---CISEDSFRNFYGR 367
+KF K + + N FN K ++K + ++IF C+ + +N+ +
Sbjct: 306 G-YKFLFKLNEKDI----------NYYKFNIKTLIKNFYIKNIFYTICLINNKIKNWLDK 354
Query: 366 ----INKSFTIFLFNIFLYNILWILVFNIFIKQFISFLFNIF------LFKSMIIENIFG 217
+NK + +IF+ +LWI + K+ ++++ + ++K II NI G
Sbjct: 355 YFLFVNKKYLFLELDIFISKLLWIKIKKYHPKKSNIWIYSKYWKNFSGIWKFFIINNISG 414
Query: 216 --------H*FNNLVAVFQGYFFSQFYYI 154
+ FNN + + + F Y+
Sbjct: 415 KMIFLKYHYDFNNYLLYLKSNYSGTFSYL 443
>sp|Q8D342|ARNC_WIGBR Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase
(Undecaprenyl-phosphate Ara4FN transferase) (Ara4FN
transferase)
Length = 323
Score = 36.2 bits (82), Expect = 0.098
Identities = 27/73 (36%), Positives = 36/73 (49%), Gaps = 10/73 (13%)
Frame = -2
Query: 420 YEHIFCISEDSFRNFYGRINKSFTIFLFNIFLYNILWILVF---------NIFIK-QFIS 271
Y+ FCIS + + NK F IF+ IFL ++ I+ F NIF K FI
Sbjct: 219 YDLFFCISFNLIKK-----NKMFNIFIILIFLAVLMSIVFFFIFFLKIKLNIFYKILFIP 273
Query: 270 FLFNIFLFKSMII 232
+ +FL KS II
Sbjct: 274 IIITLFLIKSFII 286
>sp|Q8K9Y8|DNAK_BUCAP Chaperone protein dnaK (Heat shock protein 70) (Heat shock 70 kDa
protein) (HSP70)
Length = 638
Score = 35.0 bits (79), Expect = 0.22
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 10/100 (10%)
Frame = +1
Query: 10 RIENHQSSSINDVNKMFKSNRKNNVDKKI--QLKTFLDE--------NCNELNGNIQQNI 159
++ N I+ + K N KN ++KK ++K+ LDE N +E+ NIQ N+
Sbjct: 534 QVRNQGDQLIHSIRKQLDEN-KNQIEKKELEKIKSALDELERSLKGENKSEIEKNIQ-NL 591
Query: 160 IKLAKEITLKDSNKIIESMSKNILYDHGFKQENIKKKAYE 279
+ ++ ++T + K E++ K K EN+ +E
Sbjct: 592 LNISSKLTEINQKKSEENLKKEDTSSESKKDENVVDAEFE 631
>sp|Q89AL3|ISPZ_BUCBP Probable intracellular septation protein
Length = 178
Score = 33.9 bits (76), Expect = 0.49
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 6/125 (4%)
Frame = -2
Query: 366 INKSFTIFLFNIFLYNILWILVFNIFIKQFISFLFNIFLFKSMIIENIFGH*FNNLVAVF 187
+N TI F + + ++I F++ I +F+ S++ +I H NL+ V
Sbjct: 5 LNSIPTISFFIFYKFYDIFIASFSLMIASLFTFIIT-----SILFNSINKHDLINLIFVI 59
Query: 186 QGYFFSQFY----YILLNVSV*FITILIQKCFQLYFFINIIFPIAFKHFIHIIDGT--RL 25
F + FY YI V++ + I I F N + I FK+ I + +L
Sbjct: 60 VFGFLTLFYHNSSYIKWKVTIIYFLISIVFLINYLFIKNNLLNIIFKNTIQLSKNVWRKL 119
Query: 24 VIFYS 10
+F+S
Sbjct: 120 SLFWS 124
>sp|O66742|DTD_AQUAE D-tyrosyl-tRNA(Tyr) deacylase
Length = 148
Score = 33.9 bits (76), Expect = 0.49
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 8/137 (5%)
Frame = +1
Query: 34 SINDVNKMFKSNRKNN--------VDKKIQLKTFLDENCNELNGNIQQNIIKLAKEITLK 189
SIN+ +F RK + V+K + L+ F DE G Q +++ + EI +
Sbjct: 22 SINEGLNVFLGVRKGDTEEDIEKLVNKILNLRIFEDER-----GKFQYSVLDIKGEILVV 76
Query: 190 DSNKIIESMSKNILYDHGFKQENIKKKAYELFDEYIXXXXXXXXXXXXXXXXXSERFIDS 369
+ ++ K F++ K+A EL+++++ ++ +S
Sbjct: 77 SQFTLYANVKKG--RRPSFEEAEEPKRAKELYEKFV------------------DKIKES 116
Query: 370 AIKITKGIFGYAKDMFI 420
+K+ GIFG D+FI
Sbjct: 117 GLKVETGIFGAMMDVFI 133
>sp|O51343|SYY_BORBU Tyrosyl-tRNA synthetase (Tyrosine--tRNA ligase) (TyrRS)
Length = 405
Score = 33.5 bits (75), Expect = 0.63
Identities = 20/58 (34%), Positives = 32/58 (55%)
Frame = +1
Query: 34 SINDVNKMFKSNRKNNVDKKIQLKTFLDENCNELNGNIQQNIIKLAKEITLKDSNKII 207
SI D + F++ ++V + L TFL+E+ EL N + N + AKEI + KI+
Sbjct: 243 SIYDFYQYFRNTSDSDVKTFLYLFTFLEEDEIELISNFKGNSLNKAKEILAFEITKIV 300
>sp|Q8D233|RPOB_WIGBR DNA-directed RNA polymerase beta chain (RNAP beta subunit)
(Transcriptase beta chain) (RNA polymerase beta subunit)
Length = 1342
Score = 33.1 bits (74), Expect = 0.83
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Frame = +1
Query: 364 DSAIKITKGIFGYAKDMFISFKNSFKVKANSILNETKTKIDQAISHVRFNKEFEQFKMKL 543
DS++++ G+ G D+ I ++ K K L +I +A + +E E FK L
Sbjct: 914 DSSLRVPNGVSGTVIDVEIFTRDGVK-KDKRALEIEYMQIKEAKKDIY--EELEIFKSSL 970
Query: 544 RSKMHQNWDEI---FSSLSRLISRYSGINLYNENNLKSEFISIINNETDKMIRIEEEIKE 714
+ ++ E + SLS L+ ++ NNL + F +IN K +R++EE ++
Sbjct: 971 KIQIEYFLKENNIEYDSLSELLKGNIKNLIFKNNNLNNIFEELIN----KFLRLKEEFEK 1026
>sp|Q89AT1|CVPA_BUCBP Colicin V production protein homolog
Length = 161
Score = 33.1 bits (74), Expect = 0.83
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 16/118 (13%)
Frame = -2
Query: 354 FTIFLFNIFLYNILWILVFNI---FIKQFISFLFNIFLFKS--MIIENIFGH*FNNLVAV 190
F+ ++ NIFL NI+ +VF + F K + IF+ K +I IFG F +
Sbjct: 51 FSTYVRNIFLKNIISYIVFFVFFLFFKSIFDYCIIIFIEKCGISLINKIFGMFF----GI 106
Query: 189 FQGYFFSQFYYILLNVSV*FITILIQKCFQLYF-----------FINIIFPIAFKHFI 49
+G F L + + F+ +L + YF FI ++ FK +I
Sbjct: 107 IRGVLF-------LCIVLFFLELLTNFAYNKYFKNSFFVPYFNCFIKVVIKYLFKKYI 157
Score = 29.6 bits (65), Expect = 9.2
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 351 TIFLFNIFLYNILWILVFNIFIKQFISFLFNIF-LFKS 241
T F +N + N ++ FN FIK I +LF + LFKS
Sbjct: 124 TNFAYNKYFKNSFFVPYFNCFIKVVIKYLFKKYILFKS 161
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.316 0.133 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 76,181,520
Number of Sequences: 369166
Number of extensions: 1444880
Number of successful extensions: 5232
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5215
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6921714800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)