Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02875
(244 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P26773|SOM1_ACIGU Somatotropin I (Growth hormone I) 30 2.3
sp|P26774|SOM2_ACIGU Somatotropin II (Growth hormone II) 30 2.3
sp|P48276|YC36_CYAPA Hypothetical 18.6 kDa protein ycf36 28 8.6
>sp|P26773|SOM1_ACIGU Somatotropin I (Growth hormone I)
Length = 190
Score = 29.6 bits (65), Expect = 2.3
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -2
Query: 162 VLKYSYQILCQWLSYLKSKSRGTKRNLVGLTSKTIFPSL 46
+L++S ++ W+S L+S SR +LV LTS +F L
Sbjct: 74 LLQFSLALIQSWISPLQSLSRVFTNSLVFLTSDRVFEKL 112
>sp|P26774|SOM2_ACIGU Somatotropin II (Growth hormone II)
Length = 190
Score = 29.6 bits (65), Expect = 2.3
Identities = 15/39 (38%), Positives = 24/39 (61%)
Frame = -2
Query: 162 VLKYSYQILCQWLSYLKSKSRGTKRNLVGLTSKTIFPSL 46
+L++S ++ W+S L+S SR +LV LTS +F L
Sbjct: 74 LLQFSLALIQSWISPLQSLSRVFTNSLVFLTSDRVFEKL 112
>sp|P48276|YC36_CYAPA Hypothetical 18.6 kDa protein ycf36
Length = 159
Score = 27.7 bits (60), Expect = 8.6
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = -1
Query: 145 PNPVSMAIIFEEQISRNKAKFGWAHFKNNISFFVFLSIYK*NLIKCF 5
P P + E QI N F W K I FF +IY + F
Sbjct: 6 PIPTEQQPLNEYQILNNSVLFNWPSQKLKIYFFYLFTIYSIGFLLTF 52
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26,318,353
Number of Sequences: 369166
Number of extensions: 430712
Number of successful extensions: 1078
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 68,354,980
effective HSP length: 51
effective length of database: 58,933,495
effective search space used: 1709071355
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)