Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02866
(118 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NZ32|ARP10_HUMAN Actin-related protein 10 (hARP11) 33 0.16
sp|Q9QZB7|ARP10_MOUSE Actin-related protein 10 33 0.16
sp|P80428|ARP4_YEAST Actin-like protein ARP4 28 5.1
sp|Q09849|YAE9_SCHPO Hypothetical protein C23D3.09 in chrom... 28 5.1
>sp|Q9NZ32|ARP10_HUMAN Actin-related protein 10 (hARP11)
Length = 417
Score = 33.5 bits (75), Expect = 0.16
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = -1
Query: 118 GTSQIPGFKSRLLAEIRKLSKNNKY 44
GTS +PGF RLLAEIR L + KY
Sbjct: 308 GTSMLPGFLHRLLAEIRYLVEKPKY 332
>sp|Q9QZB7|ARP10_MOUSE Actin-related protein 10
Length = 417
Score = 33.5 bits (75), Expect = 0.16
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = -1
Query: 118 GTSQIPGFKSRLLAEIRKLSKNNKY 44
GTS +PGF RLLAEIR L + KY
Sbjct: 308 GTSMLPGFLHRLLAEIRYLVEKPKY 332
>sp|P80428|ARP4_YEAST Actin-like protein ARP4
Length = 489
Score = 28.5 bits (62), Expect = 5.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 118 GTSQIPGFKSRLLAEIRKLSKNNKYCNLET 29
GTS IPG RL+ E+ K+ + K+ L T
Sbjct: 413 GTSSIPGLSDRLMTELNKILPSLKFRILTT 442
>sp|Q09849|YAE9_SCHPO Hypothetical protein C23D3.09 in chromosome I
Length = 430
Score = 28.5 bits (62), Expect = 5.1
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = -1
Query: 118 GTSQIPGFKSRLLAEIRKLSKNNKYCNLETME 23
GTS IPG RL AE+++L+ ++ N+ T E
Sbjct: 352 GTSLIPGLSERLQAEVQRLATGSR-INVHTAE 382
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,042,532
Number of Sequences: 369166
Number of extensions: 160013
Number of successful extensions: 446
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 68,354,980
effective HSP length: 12
effective length of database: 66,138,160
effective search space used: 1719592160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)